Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0139400 | OGI:02007010 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:2106365-2110510 | ||||||||
| Gene Symbol | LCRN1, OsSPL3, SPL3 | ||||||||||
| DNA seq | GGAGAAGGCAGTGGTGTGGCCAAGCTTGAATGCTCCAGTGAGGCTGCTTCTCTGGCTGCCAAGCTGATGGACGCGCCGCCATCGCCAGATCGGCTCGCCGGATCAGTGGAGCTCCATGCTTCTCCAGGCTGCTGCTGATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGTTTTTTTTTTTCAGGAGGAATTCATCAGGAATCTGCTGTGCTCCTTTTCTCTGGGAGAGAAGCAAAGAGCAGGTACTTCACTACCCCCTCCCCCCACTGTTGAGGTAGTTGTGCTTTGCCTTTCTTGCATCTGAAATGATGATGTTGCTGTTCTTGCCATGATTGATGATTCCCCTGATAAAGCTAAGCTAGAGTCTGCATATATGGGCATTCATTGATACTCTTGGTAGCACATCTTGTGGTGGTTGTACTTCTCTCTCAAACTTCAATGATGCACAGTTGAGTCAAGTGTCAGCTATGCCATAAATCTGTCCTGATTTCTGCAACTTCTAATTGAGTTATATTTTCTTTTTGAGTATCTGTCCTTCTCATATTTCATTTTGTTGATTTAAAGGTTGGAGCAGCAGCAGCTGGGATCTGTAACTGGCATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTGAGATTTTCTTCTTGGTTACTAAATATGTTGTCTGCTTGTTATCTTGAATCCGATCTTAGCACCCTTGATTAAGGTAAAGTAAAATTGTTCTTGTTTCATTCTTTTCTTTGAACTTCTGCTGTTTTTGTAGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGGTATTAAGATTCTATTTGCATTATAGTTCTGTGAAATTGAAGCTTATTTTGTCATCTACCCAGTTTAAATCTCACCCCCCCCCCCCCAATACCATAAATATTGTCACCGAACTGATCGGTACTAAAACATGGGAAGTTTCAACTGTGCCATCTCTTTGTATTGTTATTTCTGCACATAATACTTCAGAAAGAAAAATCACTCTGAAAAATTAACGAATTGGAGCACAGAAGTTGTTGAGTATCTGAGTAAGCATTAACTAAAATTTCAAGAAGTGCACATTGAATTTAGTGTACCCGTAAGTTGTACAAAAGTGGCTTTAACTTCCATAATAGGCAATAGTACAATAGTAATAAGCAACCTATTTCTTCTCGTTAGTCGTTACATCTGTTTAGCTTAGCGCTGAAATTGTTGTGACTTGTGACCGTCCTAAGCAGATGCAAGGCAACAGGCAAGTTTTCTATTTGGTCAAGCTCCTTATGGTCAGATGGGAAGCTGTGCAAGTTCTTGGGATAACCCAGTACCAGGAGGCTTCAAATTTACAGCAACAAAAGCTCCTTGGTCAAGGCCAACAATAGCTGCCGGTGTTGATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGTATTTTGTTTCTCTAGCTATTTATAGATGAACTTTCCAAAAGAAAAAGGTGAGAGGTTAACATTCTGAAAGCAAAAGATGAGAAAATAATAATAATGTTGGGTCTTTCACCCGCATAAAAATTGTTCTCACAACTCCTTATGAGGAAAAAGAGCATAGACGGATGCGCCTATGTAGTCCTAGAAGCTATTTTATATGATGGTGCCTCTTGGGATGCTTCTTCTTGATTCTAGCTGATCATTGGTGTTTCTGTGAAGTTATTAGATGGTATGGAACTCTATGCACTTAGGACGTATGGTCGTATCATTTCATTAGATAAGTTTTTCCCATGACTACATGTCTGGTTATTTATTTTTACAACACGAGAACCTGATTGTTGGGCTACGTTCTTCTCCATGTTCTTTTCTTTGCTACTGACTTCTGATTAAACTCATCCTTTGTCTACATCAGCTTCTTTTTCTTACCAAAGATTGATCCAGCTTTATATAAAAGCCGGAGAAAAGTCTTACAGACATTACAGACTAAGACTGAAAGAAAACTACATTAGCTTCTTGCTTGATTTTAAAAGTACTATTGCATTGTGCCGCAGCAAGTGTCCACATACCACAATCTTTCCCATGAAACTCATCCTTTTTAGCAGAGCTGTCACCATCCTCCAGTTGCTGACACCTTAACATTGAGTCAGCTCACAATAATGTAGGCACAAAGCTACAACATGTGAAACAAATTTCCGGACCCCACTCCTTGCAATCTAGGACAGCTTGTAGTGACGTGTGTAAGGTGAGTGGTATATATCGATATCATAGATTGGTTTGAAGCTCTGTTATGTTCTGTGAAGTAGACTGCAATCACTGAAAACCTTTGCGTTTTCGCATGTTATTGGAGCTTCATTTGTGGCCGGTAACCACCCACCTTTGGTGTTTCTTCATTTGGCCCAACTCTTGTACAATGACTAGCACCAGAATGTCCTGATCAAGCATGATTCTGCTTCAACAGCTTAGTTGAGTGTAATAATGTGCATGCAGGAAAGCTTTAAGCTTTTGACCAAAATGGAGGGAGTCGCAATCTGTTGGATAATCTAATCATCATTACTTCTAGTAGGACCAAGATCCTCTACATGGAAAACCTGGGCTCATATATACTACTAGAAGAGAGGAATTATCTTCACTGAGATTTTTGTTGCAATCTGTTCATAGTTACCATGATATATATGACTTCAATTCCAGCTGCATCTGCTCATACGATCTTTTTTCGGTTATTTATCCGCATAAAACTTACAGTTCTACTCACTAATTTTTCAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTGTCATGATGCCATCTCCAGCAATCTGGCAAGGAGGCTTGTCCCTTGATCAGCAGGCGCAGTTTCAGGCTTTCGACCGCCTTGGCAACGACGACGACGAAGATCATCTCCAGCTCCCAAAGCCTTCCTATGACAACTCCCACTATGATCAGATGAACTGACGATGTTTCAGATGTCGCGCAATCGACATGGCTTCTGCTCTTATCTGAAATTTCTGAAATCTGGAACTGCATTCTTGGTGTTCTGAAGAATAAAGGTGTGCGAGAAACTTGAACTTGAATTGATCTGGTTGTGTTGTACTCTGGTTGTAGCGCTGCCATGAAACATAAACTTAACTTTTGCTTTCCTTTAGTCGCTGTCACTAATCGTGTGCTTGAATAATTTCATTCTGGTGATACTTTGTATCAGAATTGCTTC
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| CDS seq | ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGGTATTAAGATTCTATTTGCATTATAG
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| Protein seq | MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGGIKILFAL |
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| Function | Squamosa promoter-binding-like protein 3 [UniProtKB/Swiss-Prot:A3A2Z8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0139400 | OsNip_02t0139400-01 | Chr02 | 2106368 | 2110510 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGTTCTTTTGGGATGGACTGGAATCAGAAGAGCTCGGTGTTGTGGGATTGGGAGAATATGCCGCCGATAGGAAATAGCGCGAACGAGAATCCCAAGAATGTGATGCTGGCTGAATCAAAACTTGCAGGTGTTGGGGTTGACATAGGCCATGAATCAGGCCATTCTTCTGGTGGTACTTTCTCTTCTAGCTCAGAGATTGGGTATGGTTCATCCAAGAGTTCCATATCCGCGTCGATCGATTCTCCGTCCAAAGTGGGGAACACCATAGAGCTCAATTTTGCATCTGCGGAAGAGCATGATAAGAACATGGACAAGGGTAAGAGTAAAGTTGATGACACCGGAACTTCTCGATCACCGGTGGTAGCAGCCAATCGTGTAGAGCCCTTGATTGGCCTGAAGCTTGGCAAGAGAACCTATTTTGAAGATGTCTGTGGAGGGCAGAATGTCAAGAGTTCTCCATCTGGTGTGAGTGTGGCTACCCCATCTCCTGGTCTGGCCAAGAAGGTGAAGGTGGCTCAGCAGAACACTCAGAACCCACACTGTCAAGTTGAAGGCTGCAATGTTGATCTCTCTTCTGCTAAACCTTACCATCGAAAGCACCGAGTCTGTGAACCTCACAGCAAGACTCTTAAAGTCATCGTTGCGGGTCTTGAGCGACGCTTTTGCCAACAGTGTAGTCGGTTTCACGGTTTAGCTGAGTTCGACCAGAAAAAACGAAGCTGTCGCAGGCGCCTCCATGATCACAATGCCCGCAGACGGAAGCCACAACCAGAAGCAATTTCCTTAAGTTCGTCGAGGCTCTCTACATTACTCTATGGTGGTATTAAGATTCTATTTGCATTATAG
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| Protein seq | MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEHDKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGGIKILFAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0139400 | OsNip_02t0139400-02 | Chr02 | 2106365 | 2110443 | + | IsoSeq | ||
| CDS seq | ATGGGACGCATGTATCTAATCAGCAGGCATCGGGCAATGTACTGCCACATGGAGCACATCATAGTTTTGATGGTCTCATGGCGTTCAAAGAAACCAACGCGAAGGTCCTTAACCAAGGCATGGAAGCTTCTGCTGTCGCTTCCGGCTCCGCTAGAGGCCCAGACTTTGAGCATGCTCTCTCTCTTCTGTCAATCGATTCAGTGGGTGCTGCAAACCTTCAGCCAGGTTCTCAGATTCACCCTGGTGTCACCGCCATTGCCGGCACCTCCAACCCTG
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| Protein seq | MGRMYLISRHRAMYCHMEHIIVLMVSWRSKKPTRRSLTKAWKLLLSLPAPLEAQTLSMLSLFCQSIQWVLQTFSQVLRFTLVSPPLPAPPTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 2107792 | 2108636 | + | OsNip_02t0139400-01 | OsNip_02t0139400-01,OsNip_02t0139400-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.876468 | 2.379473 | 4.759631 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0703500 | RBH | 0.997786 | 1.488400 | 4.646187 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04680 | RBH | 1.778668 | 1.936677 | 1.256840 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0139400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003090 | RBH | 1.072988 | 9.985072 | 11.508287 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003180 | RBH | 0.508901 | 6.703166 | 5.384137 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003120 | RBH | 0.000000 | 24.140198 | 11.839040 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0003080 | RBH | 0.334737 | 0.642696 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003120 | RBH | 8.749301 | 40.701885 | 21.804005 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0035600 | RBH | 10.715208 | 18.9958935 | 20.712859 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003030 | RBH | 0.417435 | 1.511873 | 2.377100 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0036500 | RBH | 12.297342 | 8.177021 | 60.3912775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0003100 | RBH | 0.421744 | 0.646633 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003020 | RBH | 1.495903 | 28.740917 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0003100 | RBH | 5.437572 | 23.394976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003190 | RBH | 1.693721 | 0.734962 | 2.335747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0003140 | RBH | 0.956788 | 3.757945 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003130 | RBH | 1.026954 | 12.563523 | 2.255771 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003060 | RBH | 3.561733 | 16.471041 | 10.681087 |
