Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0664900 | OGI:06077260 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:27462105-27463014 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACAATCAATGGAATGCAGCGCCATCTTCAGGCACGAATTCAGAGTAAGTTGATTTACCATGGCTATATTAATTTGTTGTTCATTAATTCAAAATGCACCCTCTTTTTAGCCAAACAATCAAAATTAATTTTCTTTTGTCTATACTTTCTGATCGATCTAGCTCCATGCATGTTCATATGTTTTCAAAATTAATTTTCTGTTCTGTCGATCTTCACAGCCGCAACGTGCATGTGAATGGGGCAGATAAGAAGGCCCAGAGCCAAGAACAACAAGAGGTGAGAGAGCATATGTATTTTTAAATTCATCATTGCATACTGATGACTAGTTCACATAAGAAATTAGTACCCCTTTAAGTTCATTATTTGCTCCTCCCATTTATCTCAAAATAAATTAGTACCCCTTTAAGTTCATTATTTGCTCCTCCCATTTATAAAAGTAGCAGATATATGTATTAGGATCGGAGCATATAAAATGTAGTATAATTTTATTAGGATTTGATAAAAAAGAGGATATTTGCGGAAGGAATAGCATGTTGCTTCTGAACTTTACATGCATGAACGTTCCCCATTAAATTCTCACATGTTCTATCTGAAAATTAAATGATATGTCTCTTGCAAGAGGAACATTCTTGGGAAGTTTACCCTGCTAGTGCTAGCACAACTTTTTTTTCAATAATCTTTCAACTCATCATGAGTATTATATTTGGCATATGCATTTTCTTTGGACACCCAGAAAGTGAATATATTTCTTTGCATGCAGGCAGAAAAGCACCTCCAGATGAGGGTTGAGGCCCAGGAGAAATACATGCGGTCCATGATGGAGAAAGCACACCAAGCCCTCGCATCTGGTGCCACGTGGCCCGCCGCCAATGAGCAGGCGAAGATCTCACCTCCAGGAAGGAAGTGA
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| CDS seq | ATGGACAATCAATGGAATGCAGCGCCATCTTCAGGCACGAATTCAGACCGCAACGTGCATGTGAATGGGGCAGATAAGAAGGCCCAGAGCCAAGAACAACAAGAGGCAGAAAAGCACCTCCAGATGAGGGTTGAGGCCCAGGAGAAATACATGCGGTCCATGATGGAGAAAGCACACCAAGCCCTCGCATCTGGTGCCACGTGGCCCGCCGCCAATGAGCAGGCGAAGATCTCACCTCCAGGAAGGAAGTGA |
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| Protein seq | MDNQWNAAPSSGTNSDRNVHVNGADKKAQSQEQQEAEKHLQMRVEAQEKYMRSMMEKAHQALASGATWPAANEQAKISPPGRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0664900 | OsNip_06t0664900-00 | Chr06 | 27462105 | 27463014 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACAATCAATGGAATGCAGCGCCATCTTCAGGCACGAATTCAGACCGCAACGTGCATGTGAATGGGGCAGATAAGAAGGCCCAGAGCCAAGAACAACAAGAGGCAGAAAAGCACCTCCAGATGAGGGTTGAGGCCCAGGAGAAATACATGCGGTCCATGATGGAGAAAGCACACCAAGCCCTCGCATCTGGTGCCACGTGGCCCGCCGCCAATGAGCAGGCGAAGATCTCACCTCCAGGAAGGAAGTGA
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| Protein seq | MDNQWNAAPSSGTNSDRNVHVNGADKKAQSQEQQEAEKHLQMRVEAQEKYMRSMMEKAHQALASGATWPAANEQAKISPPGRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45420 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0664900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025480 | SBH | 0.0 | 1.904304 | 0.911331 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025290 | SBH | 0.0 | 0.0 | 0.578812 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025480 | SBH | 0.280390 | 4.452988 | 1.761783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025070 | SBH | 0.0 | 0.083344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025540 | SBH | 0.0 | 5.632754 | 0.709771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0430800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0413000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025420 | SBH | 0.0 | 0.088178 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025090 | SBH | 0.0 | 6.288530 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025680 | SBH | 0.095407 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025340 | SBH | 0.000000 | 1.006289 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025310 | RBH | 0.0 | 0.0 | 0.0 |
