Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0025420 | OGI:06077250 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:28921432-28924078 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttcccttcttcttctccttctccttctccttcctcctccaagaagcagcagcagctcagtggcggcgtcggcgtcggcggcgccgcggcggcggcgagctcgaatgatcggccgccgttgtgcgtccagggtgactccggcctcgtcctcaccaccgaccccaagccacgcctccgctggaccgtcgagctccatgaccgcttcgtcgacgccgtcacccagctcggaggcccggacagtacgtagctacgctctatacatgactgatcttgatgctgagaatttgattatttgattttatttggttcgagttcggttcttcttaattaattacttgtatgtttcatgatcaaactcttgatcaattgtaaattacttgtatgtttcatgatcaaactcttgatcaattgtagaggcgactccaaagacgatcatgagggttatgggagtcaagggactcacactttaccatctcaagagccatcttcaggtgtgtgtgcagtacatatatagatccatgtctatatatggttttctagttgcactagctagcatggttagaactagggttagcttatgctctctctctctctctcatgttttgtagattgttgtttttcagaaattcagacttctgtatctctggatctctctcatgtgttgtagattgttgttttttcagaaattcagacttgggaagcagcacaaggatttcaacgaccactcggttaaggatggtaaacacacgatctacttgttaaaatagcatattacattcctaattgtgttcttataattagctggctagttagcttgttagtttgttcgcacatgcatgtttttccttcctttaattccgcttgttaaagtttaccgacttgatatatgttatcagtgaatttctgtttcgtttgtactagctagctaattaaacagcttaatttacttaccatgattctttcagaatagttaatttcacactttctctgaatataatcaaaaggtgaattatattcaaacttatattcgtccattttcccactgcagcaatggacatgcaacggaatgcagcgtcttcttcgggcatcatgggaagaagcatgaatgagtaagttgattttttttttcatagagtaccctagctagattaggttgttcattaattcaaaatgtggtttttaataactatcttattattcaaaatttctatgaattgttagccgcagcgtgcatgtgaatgaggcactaaggatgaagatggaagttcagagaagattccatgaacaattagaggtaattaagagcattgtcagaaacaaattaattttctgtaattcagcatggtgtcaaattaatcacatactgaacttaatagcccaagaaattacttattaatttgctttgctttattctgcatatgctccttcacatgttgcctttgaacttttgcatgcatgcatgaacgttcttgggaagtttacatgcttgtggacagcttatatgtcaatgtttgtccttcacatgttctgaaaatgagatgcatccatgcaagaacattcttgggaagtttacctagctagcacaactttatttttttcctatactcatctgtggcactcatgagtttggcatatatgcattttctttggacacaaaagaagtgaatataactaactttgcatgcaggtgcaaaagcaccttcagatgagggttgaggcccaggggaaatacatgcagaccatcctggagaaagcataccaagccatctcgtcctcaggagattgcgccacgtggcacgcaggatacaaatctctaggcagccaagctgtccttgacattggcagctccatgagcttcccttctctgcaagatgatctgcagttatatggaggaagccatctagatcacctgcatcagcagcatgagcagatggagatcaggccatcaattgataccttcttggcattcaattacagctccagtactgggaagagcccaatggtgtggcccggcgccgacgacggcggcggcgagccggcgaagatctccggcgatcatcagctccagatggcggcgccggcgacgacgacgatgatgatggaggccatcaccatgtcaggaggagactccatgggcagtaaggggtttgagggtcagatgagctctaagcttgacatgagatcaccacctccacagcaaacagcgctacctgtaggaagtgagaggatgagtagtccaattgttggagccaaggctaggaacatctcctatgggtaaactaattgatgatgaattgaagaggtaattatattaactgcatgtttaattttgtggtgaaaccagcaagcaggctgaactgatcttgcaagatcactgaataagcatatgtaactgtcttgttattagttgggagagtatacaaaagtagtattgcattatgcatcgttcaattaattaggatgcatccatgcatgcaattaattaagttcttgagagaggagggtgatctagataattagtcgtgcctacattcttaattttggcttaaagtttgtaaattttaattttgtgttgtcttaattcatccacgcttgtctgaacattaacgaaagttttcttatatatatgtatttggagtcgtgtc
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| CDS seq | atgttcccttcttcttctccttctccttctccttcctcctccaagaagcagcagcagctcagtggcggcgtcggcgtcggcggcgccgcggcggcggcgagctcgaatgatcggccgccgttgtgcgtccagggtgactccggcctcgtcctcaccaccgaccccaagccacgcctccgctggaccgtcgagctccatgaccgcttcgtcgacgccgtcacccagctcggaggcccggacagtacacttgggaagcagcacaaggatttcaacgaccactcggttaaggatgcaatggacatgcaacggaatgcagcgtcttcttcgggcatcatgggaagaagcatgaatgacgtgcatgtgaatgaggcactaaggatgaagatggaagttcagagaagattccatgaacaattagaggtgcaaaagcaccttcagatgagggttgaggcccaggggaaatacatgcagaccatcctggagaaagcataccaagccatctcgtcctcaggagattgcgccacgtggcacgcaggatacaaatctctaggcagccaagctgtccttgacattggcagctccatgagcttcccttctctgcaagatgatctgcagttatatggaggaagccatctagatcacctgcatcagcagcatgagcagatggagatcaggccatcaattgataccttcttggcattcaattacagctccagtactgggaagagcccaatggtgtggcccggcgccgacgacggcggcggcgagccggcgaagatctccggcgatcatcagctccagatggcggcgccggcgacgacgacgatgatgatggaggccatcaccatgtcaggaggagactccatgggcagtaaggggtttgagggtcagatgagctctaagcttgacatgagatcaccacctccacagcaaacagcgctacctgtaggaagtgagaggatgagtagtccaattgttggagccaaggctaggaacatctcctatgggtaa
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| Protein seq | MFPSSSPSPSPSSSKKQQQLSGGVGVGGAAAAASSNDRPPLCVQGDSGLVLTTDPKPRLRWTVELHDRFVDAVTQLGGPDSTLGKQHKDFNDHSVKDAMDMQRNAASSSGIMGRSMNDVHVNEALRMKMEVQRRFHEQLEVQKHLQMRVEAQGKYMQTILEKAYQAISSSGDCATWHAGYKSLGSQAVLDIGSSMSFPSLQDDLQLYGGSHLDHLHQQHEQMEIRPSIDTFLAFNYSSSTGKSPMVWPGADDGGGEPAKISGDHQLQMAAPATTTMMMEAITMSGGDSMGSKGFEGQMSSKLDMRSPPPQQTALPVGSERMSSPIVGAKARNISYG |
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| Function | Myb family transcription factor IPN2 [UniProtKB/Swiss-Prot:E5L8F7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0025420 | OsLima_06g0025420.01 | Chr06 | 28921432 | 28924078 | + | NAM | ||
| CDS seq | atgttcccttcttcttctccttctccttctccttcctcctccaagaagcagcagcagctcagtggcggcgtcggcgtcggcggcgccgcggcggcggcgagctcgaatgatcggccgccgttgtgcgtccagggtgactccggcctcgtcctcaccaccgaccccaagccacgcctccgctggaccgtcgagctccatgaccgcttcgtcgacgccgtcacccagctcggaggcccggacagtacacttgggaagcagcacaaggatttcaacgaccactcggttaaggatgcaatggacatgcaacggaatgcagcgtcttcttcgggcatcatgggaagaagcatgaatgacgtgcatgtgaatgaggcactaaggatgaagatggaagttcagagaagattccatgaacaattagaggtgcaaaagcaccttcagatgagggttgaggcccaggggaaatacatgcagaccatcctggagaaagcataccaagccatctcgtcctcaggagattgcgccacgtggcacgcaggatacaaatctctaggcagccaagctgtccttgacattggcagctccatgagcttcccttctctgcaagatgatctgcagttatatggaggaagccatctagatcacctgcatcagcagcatgagcagatggagatcaggccatcaattgataccttcttggcattcaattacagctccagtactgggaagagcccaatggtgtggcccggcgccgacgacggcggcggcgagccggcgaagatctccggcgatcatcagctccagatggcggcgccggcgacgacgacgatgatgatggaggccatcaccatgtcaggaggagactccatgggcagtaaggggtttgagggtcagatgagctctaagcttgacatgagatcaccacctccacagcaaacagcgctacctgtaggaagtgagaggatgagtagtccaattgttggagccaaggctaggaacatctcctatgggtaa
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| Protein seq | MFPSSSPSPSPSSSKKQQQLSGGVGVGGAAAAASSNDRPPLCVQGDSGLVLTTDPKPRLRWTVELHDRFVDAVTQLGGPDSTLGKQHKDFNDHSVKDAMDMQRNAASSSGIMGRSMNDVHVNEALRMKMEVQRRFHEQLEVQKHLQMRVEAQGKYMQTILEKAYQAISSSGDCATWHAGYKSLGSQAVLDIGSSMSFPSLQDDLQLYGGSHLDHLHQQHEQMEIRPSIDTFLAFNYSSSTGKSPMVWPGADDGGGEPAKISGDHQLQMAAPATTTMMMEAITMSGGDSMGSKGFEGQMSSKLDMRSPPPQQTALPVGSERMSSPIVGAKARNISYG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.088178 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0664800 | RBH | 0.0 | 0.094614 | 0.419338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45410 | RBH | 0.0 | 0.085743 | 0.104282 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0664800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025480 | RBH | 0.0 | 1.904304 | 0.911331 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025290 | RBH | 0.0 | 0.0 | 0.578812 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025480 | RBH | 0.280390 | 4.452988 | 1.761783 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025070 | RBH | 0.0 | 0.083344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025540 | RBH | 0.0 | 5.632754 | 0.709771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0430700 | RBH | 0.7222275 | 1.3309005 | 0.832811 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021570 | SBH | 0.000000 | 0.304265 | 0.976629 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0412900 | RBH | 0.9094625 | 1.812245 | 0.794925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005970 | RBH | 0.071914 | 0.085363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025090 | RBH | 0.0 | 6.288530 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025680 | RBH | 0.095407 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025340 | RBH | 0.000000 | 1.006289 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025210 | RBH | 0.0 | 1.765190 | 0.643764 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025300 | RBH | 0.0 | 0.0 | 1.766500 |
