Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0634500 | OGI:06072770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:25727513-25733220 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAGTAGCAGTGCACAAGTCCATAAATGTACATTTATCTACCTTCTTTTCTTATCTACTATAAATTAATTAACAACTACCAAAATACCAGCCACCTGAACACTATACATGCCATTCACAAAGTCCCAGTAGCGGCCCAAAATCCACATACTGTAGTATACAATCTGGACAGATACCACAGAGAGAACAGAGTGAAAAAACTGAACACTGAACAGCTCATGCCAAACTCAACAGGTGATCAGATCATTCTTTCTTTTCTTCTCTTCTCTTTTCATTTTGTGCAGGAACAAGTGATCTGATCCATAGCTTTGGAGATACTGGGATGTTGCCACAGTCCCAGCTTGCTTTCTCTGAAACTTTTGTAACCCTGCATAGCTGAGAGACTGAGAAGATTTTGGTCTCAGATGGCGTCGGCTGTGCCTCCCTCGCGGTCAGGGCCCCTGTATGAAAGCCCCACATCCTCTCCTGATTGACGCCTCACCATGCTTGCCCTCTGCACCAGGCGCACCAGTTGCTGGACAACCTCGGACATCGGTGGACGGAACTCCGGTTCGGGCTACAAAGCATTGACAGCATTATGGTACAAACTGAAAATGATGATCGATCTTAGCGTGCTTCTGAAGAGTATTTCTAGTTCATATGTTATCCAAAACCAACTTTAAGATTGATAGAACTGAACCGTCTGCTCAGTGAGTTGTTCATATTAGAAGCTGTAAGAACAATTTTGGGCGAACAAGAAATGGGTAGTCATATGCAGGACAAAGAAATGTGCGAAAGATAACGAATATTACCTGGACACACAATGCAATTATGTCAGCGAAACGGGAGAGTGATTTTGCAGGGTACATCCCATCCATTGCTGGATCAACCATCTTGGCAAGCGCATCGATGTCATGAAGCTGTGGAGTAGCCCATGTGACAAGAGACTGTTCGGACCTCTCTCTAGAGCTGCACATTGCAACACAAGAATGAATGACGGCCTTGAAGTTACTAATAAAGAAATACATTACTCATTTTCTTACTACTTACTAGCTCTGAAATAATAAGGTAATGTACCTGTCTAACGGTTTACGTGCTGTCAATAGTTCTAACATCACTACTCCAAAACTGTACACGTCACTTTTTACAGTATATATTCCTGACATGGCAAACTCTGGGGCGCTATATCCAAAAGATCCAAACACTTCAGTTGAAACCTGCATCATAACACATGGTTTAGCCCAAAGAACTACTGTAGGACCTAAAGATGAAATGTTGGAAATAACTACATTGATAGAGATGTGGTACTACATTACTTACCTCTCTCTCAGGATTTGGTGTCAGGGCAGCAAGCCCACAGTCAGACAGATGGGGACTGTATTCTTTATCAAGCAGGATATTCGCTGACTTTAAGTTTCTATGTACAACAGGGGGCAAGCACACCTCATGCAGGTATCTGAAGAAAGGTTGGCATTGCATTGTAGCATTATACTTGATTAACATAACCTTTTCATAGAGTGAAAAACACTAGAGTGCTCAAATAATAACATACTCTAAAGCTCGCGCGGTGCCTAGTGCTATCCTCATGCGGTGGTTCCATGTAAGGATCTTGCTTGTATCATCGAAAAAATGCAATATATCATGCAGTGTCCCATTTCCAATGTGCTCATACACAAGAAGCCTTTGTCCATGTTCAACACAATAGCCTGCAAGCGGCACAATGTTTGGGTGCCTAAGTCGTGAAATGCTCGACACAACCTCAAGAAAGTTATCTTCTTCATACAAGGAAAGTGACGCACTGTCTATCTTCTTCACTGCAAGTACCTGCGATCAAGCACAGAATTCAGTTCCACTGCGTCATAGCTATGCAAATAAACACTTGTTGAACATATATAAGGCAATACCATGCTAAGTTCAAAGTAATATTTCTGTATTGACCAACAATAGATTACTGCAAGTGATGTTTTACCTTTCCATTGGGGAAGTCGGCCTTGTAAACACGACCAAGTGAACCCTCACCTAGGAGCGAATCTTGGCAGAAGCTGTTTGTAGCAACTTGGAGAGAAGCAACTGTATATGGATTCGCTGTGACAGAGACCTTCATCTTCTTTGACATAGAGCTGTTTGTACTATATACCCTTTCAGGAGTCATTTTTCCCATAGGCGGGAGCACGGAACTTGAAACAGGTGCGTCTTGCTGGGTGTGATCCCATATTTCCCTGTTAGAAGCTGCAAAAGAAAAGCACCAAAGATGTAGGTAATATTGATTTATTTTCAACTTTGGGGAATGAACAATTGAACATCAGGGCCTTCTGCAGTTCTTTAAGTTTCATTTTTTATTATATATTGGTAACAGCAAACCACAAAGTAATGTTACACTTTGCCTTTTTCTCAAAATGGCAGGAGCACTGCCAATAAAATAAGCAGAAACAGCCACAAAGTAAGGTACAAAGTTTATTATTCCCATCTCCCAAGCATACCCAAGCACCTAATAGCTATAATGCAGGTGCAAAGAGCACATCAATAAAGGAAGAAGAATGCCAAAAAGCTAGTCATCAACAAAGCAAACACCATGTTTGAGATATCTGGCAGAATAAAATGTTTATCTCAAACAAGTCTTCGTTTCTTTTCTATTTATATTTTATCAGATTTGGAGAAAAAATGATATTAGTATCTCACTCACATATTTTTTCGTAATGCCTGCTCATGCCATCTGGTCTTAGTCAGATGTCAGACAGTGGCCTAAATTTCACGATTATCACCAGCCACAAGAACTATTACTATTCTTATATGGGGAAAAAAATCTGAGCCACAAATAACAAATATTAATAGTATGATAAAATGAAAATATTGTGCACAAATATATAGGAGCATACCTCTATCTATGTTTACTGCAAAAGTGCTTGCGACATCTTTTGATTCACTGATCCCACCATCTTTACTTTTCCGGACATTGTGAAGGCACAGTACCAACGCGAAAAGTACACCACAAGCAGCAGCCATTGAGCCAATAACTATCCCTATAACCAGACCAGTTCGCAGACGTTGCTTCTTGTCACTACCTTGATCAATAGGAATCTCAGGGATATTTGGAGCAGTTGTTGGTCCTTGAGGAAAGTCTGGTTGACCCTGAGGTGGTGAAGTGATAGTAGATGGCGGAGATGAAGGTACATTGAGAAATGAGTTTCCTCCAAGTCTATTTTTGAAAATGCATTATCCCATCAGCATGCAAAATTTGATGGTTTTCATAGAAAAGAACATTAAAACATGTTGGTTGTTGGTGCGTACATCAAATGTGAAATTGAACTGAATTCTTGTGGTATTGAACCGCTGAAATTGTTATTTGCTATGTTTCTGTTCAAAGGCACAATAGCTCACATAATTAGGCGAAAAGCATGAGAGGAAGATTAGGATAGAAATCGTGTCAGCCTGTACAAAATCACTCACAGTGTAGTAAGGCTTAGGTTGCTGAGTACATTGACTGTGCCCGATAGTTGGTTATTTTGCAGATAACTACACAATGGGTCAAAAGAACTATCAGAACCATGAAATGAAATACGAAATTTGGAAGTTTGAACTGAGGATTAGTAAGAACTTACATGCCAGAAATATTTGACAGAGAGCGTAAAGAAATAGGCAAGTTGCCATTCAGGTTATTGAAAGATACATCTCTGTAAAGATTTCAAATTGTACAAGATCATGTCATGAAACCAAGAGTTTCAACAATCGAGATAACAAGCCTTGCAAAGAAAGGTCCTGTAGGACTTACAGTTCAGAAAGTGCAGTGAGGTTTCCAAACATTTCACCAATTTCCTGAAATAGTAAGTTGTGGCTGAGATTGCTGCATGTAGATGTGTTTTTTTACAGTTAGACTATGTCAACCAAAATAACAATCTCCACCTAATGAATTGCACATTTGCAATGGCCAGCACTTACAGATAGTTGAGTGAAACCATGTTGGATATCGAGTATGGAAGGTTACCGGAAAAGTTATTTCCTGCCAAATTCCTGCATCGCAACTGTTATTGAAGATGCAGGCATCAAAAACTACTTGAATAAACTTGTGCAAGCCAGGAAGCATTACAGATAGGCGAGATTTGGTGGCAGCTGATAAGGAATTGAATCATGCAAGTTGTTGCTACTCAAGTCCCTGTAAGTTAAGAAATGAAGGACATAAATTAGGGGAAAACAAGACAATAAATACTTGTGCTCAAGTAGTAGCTCATACATTGTCTTCAATGCTAGCAGATTGGATAGTTGGTAGCCAAGAGTGCCATTCAGCCCCATACCAGAAAGCTTGCTGCAGAACAAGGGAACAAACAGAATGGTTCAGCATCGAGCATCTCCATTTGAGGCGATTTCATATACAAAAAAAAAAAAAGAGAGGAAAATAGCAAAATTAAGGTATGGTCTTAAAGATAAGATACACTCTCCAGCCTCTTTTGTATAATCTATATTTTAGCCAGAATAGATATATTCTGCTTGTTGCATGTTACCCAGACATCAGATTTTGAACGAGAACAAATATCAAATATTTTTTTATGCATACGAAAAAGCCCTTTTTCCTACAACTGAAAAAGACACTGAAAACCAGCAGAGCACCATTATTTGCCTGGATGGCTGGATCCAGTCTCCCAAACTCTGAGCTGGCAAATTAATCGATGCAGAGAGTAGAGTAGAATTATATTAACACCACTTGACATCATGCAGGGAGGAAAAAAAAACTTTCTATCTCTTAATATCATAGGCATCCAATGAAAATTTTTTGGACAACGTTTTATCTCATGATAGTAGAATCAATCAACTACTGCAAAGGATGAGAATTTCCAATTATCTATCAGAAATTTACTGAAAGATAGAGAATGTGAAAAACCAACACACTTCAGGATTTCATCAGCGGCTTTCAATGCCCACACGTCAAGACAAAGCCACGGCAATCTTTTTTTACGAAATGCAGTGAAAAGAAAACCAGCAAAATGACTCCTGCTTTCCACGAACATGAAAGGCATCAAACGCGAAATCTTTTCATCACTCAAAAACATTTTGGGGGGAGTTTAATCAGAAGATCTTTTATTTACATCGAGGTGACGGCGGAGCCAACGCAGGAGACGCCCATCCACGCGGCACCGCAAGGGTCGCCGCCGCCGGCCGACCAGCCGGTGAGCTGAGCCGGGCTATTCCAGGAGGAGTACAGATTCCCCAGCGCCGCGGCTGCAAGAACCAAAAGCAACTGATCATCCGTGCAGACATATCATCAAACAGTACGCACGCATTCCAAGAAACCAAGAACTTGGGGTGAATGCTGCAATTGATATTACCGTCGCCGCCGTCGGTGTCGGCTCCCGCCACCGCCGCGAGGGCGAGGAGGAGAACGCCGGCCAAAGCGGCGGCCGCCATTCTTGGCCTCTCTCCCTCCTTCCTACCTTCACCTTCTCCCCCACCTGAAAAAGAAAGAGAAGAATATCTCCCTCGCTATCTCCTTGCTTATAGTAGCAATCTTGGCATCACATGATCACCACGGATAGCTAATATATGCTCTCGATGGATGCTGATGCTGCTGCTGCTGCTGCCATGGTTGCTTGAGGAAGGAAATCCAGTGTGGTGTCGGCAAAGATTGAAATTCTTGATTTCTTCTTAGCTTCTCCCCACTCTCCCACTCTCTCTCTCTCTCTTGCTGCTGCTGCTAGTCCGCAGTGAGGTGGGGGTGTGGCAGTACAGCTGCAGTGAGT
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| CDS seq | ATGGCGGCCGCCGCTTTGGCCGGCGTTCTCCTCCTCGCCCTCGCGGCGGTGGCGGGAGCCGACACCGACGGCGGCGACGCCGCGGCGCTGGGGAATCTGTACTCCTCCTGGAATAGCCCGGCTCAGCTCACCGGCTGGTCGGCCGGCGGCGGCGACCCTTGCGGTGCCGCGTGGATGGGCGTCTCCTGCGTTGGCTCCGCCGTCACCTCGATCAAGCTTTCTGGTATGGGGCTGAATGGCACTCTTGGCTACCAACTATCCAATCTGCTAGCATTGAAGACAATGGACTTGAGTAGCAACAACTTGCATGATTCAATTCCTTATCAGCTGCCACCAAATCTCGCCTATCTGAATTTGGCAGGAAATAACTTTTCCGGTAACCTTCCATACTCGATATCCAACATGGTTTCACTCAACTATCTGAAATTGGTGAAATGTTTGGAAACCTCACTGCACTTTCTGAACTAG
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| Protein seq | MAAAALAGVLLLALAAVAGADTDGGDAAALGNLYSSWNSPAQLTGWSAGGGDPCGAAWMGVSCVGSAVTSIKLSGMGLNGTLGYQLSNLLALKTMDLSSNNLHDSIPYQLPPNLAYLNLAGNNFSGNLPYSISNMVSLNYLKLVKCLETSLHFLN |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 8 [UniProtKB/Swiss-Prot:Q6R2J8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0634500 | OsNip_06t0634500-01 | Chr06 | 25727513 | 25733219 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCCGCCGCTTTGGCCGGCGTTCTCCTCCTCGCCCTCGCGGCGGTGGCGGGAGCCGACACCGACGGCGGCGACGCCGCGGCGCTGGGGAATCTGTACTCCTCCTGGAATAGCCCGGCTCAGCTCACCGGCTGGTCGGCCGGCGGCGGCGACCCTTGCGGTGCCGCGTGGATGGGCGTCTCCTGCGTTGGCTCCGCCGTCACCTCGATCAAGCTTTCTGGTATGGGGCTGAATGGCACTCTTGGCTACCAACTATCCAATCTGCTAGCATTGAAGACAATGGACTTGAGTAGCAACAACTTGCATGATTCAATTCCTTATCAGCTGCCACCAAATCTCGCCTATCTGAATTTGGCAGGAAATAACTTTTCCGGTAACCTTCCATACTCGATATCCAACATGGTTTCACTCAACTATCTGAAATTGGTGAAATGTTTGGAAACCTCACTGCACTTTCTGAACTAG
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| Protein seq | MAAAALAGVLLLALAAVAGADTDGGDAAALGNLYSSWNSPAQLTGWSAGGGDPCGAAWMGVSCVGSAVTSIKLSGMGLNGTLGYQLSNLLALKTMDLSSNNLHDSIPYQLPPNLAYLNLAGNNFSGNLPYSISNMVSLNYLKLVKCLETSLHFLN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0634500 | OsNip_06t0634500-02 | Chr06 | 25727513 | 25733220 | - | IsoSeq | ||
| CDS seq | ATGTGGGGCTTTCATACAGGGGCCCTGACCGCGAGGGAGGCACAGCCGACGCCATCTGAGACCAAAATCTTCTCAGTCTCTCAGCTATGCAGGGTTACAAAAGTTTCAGAGAAAGCAAGCTGGGACTGTGGCAACATCCCAGTATCTCCAAAGCTATGGATCAGATCACTTGTTCCTGCACAAAATGAAAAGAGAAGAGAAGAAAAGAAA
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| Protein seq | MWGFHTGALTAREAQPTPSETKIFSVSQLCRVTKVSEKASWDCGNIPVSPKLWIRSLVPAQNEKRREEKK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 25731304 | 25731428 | - | OsNip_06t0634500-02 | OsNip_06t0634500-02,OsNip_06t0634500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084757 | 0.0 | 3.787051 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0190500 | RBH | 0.197827 | 0.264505 | 2.627816 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38640 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0634500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019360 | SBH | 0.0 | 0.0 | 0.634953 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019420 | SBH | 0.0 | 0.0 | 1.287541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019220 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019620 | SBH | 0.0 | 0.0 | 0.715215 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0404100 | RBH | 9.884896 | 8.7977265 | 2.6234665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022990 | RBH | 0.000000 | 1.216016 | 0.850952 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0385400 | RBH | 9.5966615 | 1.7326315 | 13.084129 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019540 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019520 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019170 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019870 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023330 | RBH | 0.030442 | 14.425105 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019210 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024960 | SBH | 0.000000 | 32.638927 | 3.338268 |
