Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g38640 | OGI:06063770 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:22938990-22940807 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTTCCTTGGGTTTCTCCTCTCCTGGCTTTCTTCAGCTTCTTTATATCTTGAAATTCTTTTGCCTCCTACCGCTAGTCATCGGTAGCAACGAAACCGAAAGTGATCGACAAGCTCTCCTTTGCTTAAAGTCCCAGCTCACTGGTTCAGCTGAAGTTTTGTCCTCATGGAGCAATGCATCTATGGAATTCTGCAGCTGGCATGGGGTCACTTGCAGTACACAATATCCACGCCGTGTCACTGCTCTTGATCTCTCATCAGAAGGAATCACAGGCTCCATATCACCTTGTATTGCCAACCTCACTTATCTTACAAAGCTCCAACTGTCAAATAATAGCTTTTATGGCAGCATACCATCCGAGCTCGGCTTCCTAACTCAACTCAGCATCCTCAACATTAGCATGAACTCTTTAGAAGGTAACATTCCATCTGAACTCACTTCATGTTTCAAGCTTCAAAAGATCGACCTTAGCAACAACAAACTCCAAGGGAGCATACCTTCTGCTTTTGGGGATCTTACTGAGCTTCGAACACTTATACTCACTAGCAACAGGCTTTCTGGTGACATACCACAATCATTGGGAAGCAACCTTTCACTAACTTATGTCGATCTTGGGAGGAATGCTCTCGCAGGGAGAATTCCACAATCATTGGCAAGCAGTACATCTTTGCAGTTTCTTATTCTCACGAGCAATACCCTTAGTGGAGAACTCCCAAAGGCTCTCTTAAACAGTTCATCGCTTATTTTTCTTGACCTCCAACAGAATAACTTTGTTGGTTCTATACCACCTGTTACGGCAATATCGCCGAAAATGTACTATCTTGATTTAAGATTCAACCATCTCACAGGAACAATACCTTCCTCACTTGGAAATCTTTCCTCCCTAACTTATCTTTGTCTTATAGGGAACAATTTAGTTGGGAGCATCCCAGATACCCTAGGCCATGTTCCAACACTAGAGACACTGGCAGTTAATGTAAACAACTTGTCAGGGCCAGTTCCGCCATCTATCTTCAACGTAACATCACTGACATATCTTGGAATGGCAAACAACTCTCTCACTGGAAGATTACCCTCAAACATTGGCTACACGCTCCCAAATATTCAGCAATTAATCCTCCCGAATAATAAATTCAGTGGCTCAATCCCGAGTTCGCTTCTTAATGCATCCCACCTGCAGAGACTTTTCCTTACTAATAACAGCTTCACTGGGCATATACCATTCTTTGGATCATTGCAGAATTTGGAGATCCTTGACATGGCATACAACATGCTAGAAGCAGGTGACTGGAGCTTTGTCTCGTCACTCACAAATTGCTCCAAATTGACTCAACTGCTTCTGGATGGGAATAATCTTCAAGGGAACCTACCAAGTTGTATTGGTAACCTGTCTAGTAGTCTTGAGCACTTGTGGCTAAGAAATAACATGATTTCTGGGCTTATACCACCAGGGATTGGCAACCTTAAGAGTTTGAATACGTTGTACATGGATGACAATTATTTAACCGGCAATATACCACCCACAATTGGATATTTACACAACATGAATAAGTTGTACATGGATTACAATTATTTAACCGGCAATATACCACCTACAATTGGATATTTACACAGCATGGTCTTCCTGTCCTTTTCACACAACAGACTCTCTGGGCAAATCCCTGGCACTATAGGCAACCTTGTTCAACTGAATGAACTGCGTCTTGATGAGAATAACTTGAGTGGAAGCATACCTGCGAGTATACGTCACTGCACTCAACTCACAAAACTCAACCTTGCTCACAACTCACTTCATGGGACCACTATTGCATCTTAA
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| CDS seq | ATGTCTTCCTTGGGTTTCTCCTCTCCTGGCTTTCTTCAGCTTCTTTATATCTTGAAATTCTTTTGCCTCCTACCGCTAGTCATCGGTAGCAACGAAACCGAAAGTGATCGACAAGCTCTCCTTTGCTTAAAGTCCCAGCTCACTGGTTCAGCTGAAGTTTTGTCCTCATGGAGCAATGCATCTATGGAATTCTGCAGCTGGCATGGGGTCACTTGCAGTACACAATATCCACGCCGTGTCACTGCTCTTGATCTCTCATCAGAAGGAATCACAGGCTCCATATCACCTTGTATTGCCAACCTCACTTATCTTACAAAGCTCCAACTGTCAAATAATAGCTTTTATGGCAGCATACCATCCGAGCTCGGCTTCCTAACTCAACTCAGCATCCTCAACATTAGCATGAACTCTTTAGAAGGTAACATTCCATCTGAACTCACTTCATGTTTCAAGCTTCAAAAGATCGACCTTAGCAACAACAAACTCCAAGGGAGCATACCTTCTGCTTTTGGGGATCTTACTGAGCTTCGAACACTTATACTCACTAGCAACAGGCTTTCTGGTGACATACCACAATCATTGGGAAGCAACCTTTCACTAACTTATGTCGATCTTGGGAGGAATGCTCTCGCAGGGAGAATTCCACAATCATTGGCAAGCAGTACATCTTTGCAGTTTCTTATTCTCACGAGCAATACCCTTAGTGGAGAACTCCCAAAGGCTCTCTTAAACAGTTCATCGCTTATTTTTCTTGACCTCCAACAGAATAACTTTGTTGGTTCTATACCACCTGTTACGGCAATATCGCCGAAAATGTACTATCTTGATTTAAGATTCAACCATCTCACAGGAACAATACCTTCCTCACTTGGAAATCTTTCCTCCCTAACTTATCTTTGTCTTATAGGGAACAATTTAGTTGGGAGCATCCCAGATACCCTAGGCCATGTTCCAACACTAGAGACACTGGCAGTTAATGTAAACAACTTGTCAGGGCCAGTTCCGCCATCTATCTTCAACGTAACATCACTGACATATCTTGGAATGGCAAACAACTCTCTCACTGGAAGATTACCCTCAAACATTGGCTACACGCTCCCAAATATTCAGCAATTAATCCTCCCGAATAATAAATTCAGTGGCTCAATCCCGAGTTCGCTTCTTAATGCATCCCACCTGCAGAGACTTTTCCTTACTAATAACAGCTTCACTGGGCATATACCATTCTTTGGATCATTGCAGAATTTGGAGATCCTTGACATGGCATACAACATGCTAGAAGCAGGTGACTGGAGCTTTGTCTCGTCACTCACAAATTGCTCCAAATTGACTCAACTGCTTCTGGATGGGAATAATCTTCAAGGGAACCTACCAAGTTGTATTGGTAACCTGTCTAGTAGTCTTGAGCACTTGTGGCTAAGAAATAACATGATTTCTGGGCTTATACCACCAGGGATTGGCAACCTTAAGAGTTTGAATACGTTGTACATGGATGACAATTATTTAACCGGCAATATACCACCCACAATTGGATATTTACACAACATGAATAAGTTGTACATGGATTACAATTATTTAACCGGCAATATACCACCTACAATTGGATATTTACACAGCATGGTCTTCCTGTCCTTTTCACACAACAGACTCTCTGGGCAAATCCCTGGCACTATAGGCAACCTTGTTCAACTGAATGAACTGCGTCTTGATGAGAATAACTTGAGTGGAAGCATACCTGCGAGTATACGTCACTGCACTCAACTCACAAAACTCAACCTTGCTCACAACTCACTTCATGGGACCACTATTGCATCTTAA
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| Protein seq | MSSLGFSSPGFLQLLYILKFFCLLPLVIGSNETESDRQALLCLKSQLTGSAEVLSSWSNASMEFCSWHGVTCSTQYPRRVTALDLSSEGITGSISPCIANLTYLTKLQLSNNSFYGSIPSELGFLTQLSILNISMNSLEGNIPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSNTLSGELPKALLNSSSLIFLDLQQNNFVGSIPPVTAISPKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIGYTLPNIQQLILPNNKFSGSIPSSLLNASHLQRLFLTNNSFTGHIPFFGSLQNLEILDMAYNMLEAGDWSFVSSLTNCSKLTQLLLDGNNLQGNLPSCIGNLSSSLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGYLHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSLHGTTIAS |
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| Function | LRR receptor-like serine/threonine-protein kinase GSO1 [UniProtKB/Swiss-Prot:C0LGQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g38640 | LOC_Os06g38640.1 | Chr06 | 22938990 | 22940807 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTTCCTTGGGTTTCTCCTCTCCTGGCTTTCTTCAGCTTCTTTATATCTTGAAATTCTTTTGCCTCCTACCGCTAGTCATCGGTAGCAACGAAACCGAAAGTGATCGACAAGCTCTCCTTTGCTTAAAGTCCCAGCTCACTGGTTCAGCTGAAGTTTTGTCCTCATGGAGCAATGCATCTATGGAATTCTGCAGCTGGCATGGGGTCACTTGCAGTACACAATATCCACGCCGTGTCACTGCTCTTGATCTCTCATCAGAAGGAATCACAGGCTCCATATCACCTTGTATTGCCAACCTCACTTATCTTACAAAGCTCCAACTGTCAAATAATAGCTTTTATGGCAGCATACCATCCGAGCTCGGCTTCCTAACTCAACTCAGCATCCTCAACATTAGCATGAACTCTTTAGAAGGTAACATTCCATCTGAACTCACTTCATGTTTCAAGCTTCAAAAGATCGACCTTAGCAACAACAAACTCCAAGGGAGCATACCTTCTGCTTTTGGGGATCTTACTGAGCTTCGAACACTTATACTCACTAGCAACAGGCTTTCTGGTGACATACCACAATCATTGGGAAGCAACCTTTCACTAACTTATGTCGATCTTGGGAGGAATGCTCTCGCAGGGAGAATTCCACAATCATTGGCAAGCAGTACATCTTTGCAGTTTCTTATTCTCACGAGCAATACCCTTAGTGGAGAACTCCCAAAGGCTCTCTTAAACAGTTCATCGCTTATTTTTCTTGACCTCCAACAGAATAACTTTGTTGGTTCTATACCACCTGTTACGGCAATATCGCCGAAAATGTACTATCTTGATTTAAGATTCAACCATCTCACAGGAACAATACCTTCCTCACTTGGAAATCTTTCCTCCCTAACTTATCTTTGTCTTATAGGGAACAATTTAGTTGGGAGCATCCCAGATACCCTAGGCCATGTTCCAACACTAGAGACACTGGCAGTTAATGTAAACAACTTGTCAGGGCCAGTTCCGCCATCTATCTTCAACGTAACATCACTGACATATCTTGGAATGGCAAACAACTCTCTCACTGGAAGATTACCCTCAAACATTGGCTACACGCTCCCAAATATTCAGCAATTAATCCTCCCGAATAATAAATTCAGTGGCTCAATCCCGAGTTCGCTTCTTAATGCATCCCACCTGCAGAGACTTTTCCTTACTAATAACAGCTTCACTGGGCATATACCATTCTTTGGATCATTGCAGAATTTGGAGATCCTTGACATGGCATACAACATGCTAGAAGCAGGTGACTGGAGCTTTGTCTCGTCACTCACAAATTGCTCCAAATTGACTCAACTGCTTCTGGATGGGAATAATCTTCAAGGGAACCTACCAAGTTGTATTGGTAACCTGTCTAGTAGTCTTGAGCACTTGTGGCTAAGAAATAACATGATTTCTGGGCTTATACCACCAGGGATTGGCAACCTTAAGAGTTTGAATACGTTGTACATGGATGACAATTATTTAACCGGCAATATACCACCCACAATTGGATATTTACACAACATGAATAAGTTGTACATGGATTACAATTATTTAACCGGCAATATACCACCTACAATTGGATATTTACACAGCATGGTCTTCCTGTCCTTTTCACACAACAGACTCTCTGGGCAAATCCCTGGCACTATAGGCAACCTTGTTCAACTGAATGAACTGCGTCTTGATGAGAATAACTTGAGTGGAAGCATACCTGCGAGTATACGTCACTGCACTCAACTCACAAAACTCAACCTTGCTCACAACTCACTTCATGGGACCACTATTGCATCTTAA
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| Protein seq | MSSLGFSSPGFLQLLYILKFFCLLPLVIGSNETESDRQALLCLKSQLTGSAEVLSSWSNASMEFCSWHGVTCSTQYPRRVTALDLSSEGITGSISPCIANLTYLTKLQLSNNSFYGSIPSELGFLTQLSILNISMNSLEGNIPSELTSCFKLQKIDLSNNKLQGSIPSAFGDLTELRTLILTSNRLSGDIPQSLGSNLSLTYVDLGRNALAGRIPQSLASSTSLQFLILTSNTLSGELPKALLNSSSLIFLDLQQNNFVGSIPPVTAISPKMYYLDLRFNHLTGTIPSSLGNLSSLTYLCLIGNNLVGSIPDTLGHVPTLETLAVNVNNLSGPVPPSIFNVTSLTYLGMANNSLTGRLPSNIGYTLPNIQQLILPNNKFSGSIPSSLLNASHLQRLFLTNNSFTGHIPFFGSLQNLEILDMAYNMLEAGDWSFVSSLTNCSKLTQLLLDGNNLQGNLPSCIGNLSSSLEHLWLRNNMISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNMNKLYMDYNYLTGNIPPTIGYLHSMVFLSFSHNRLSGQIPGTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSLHGTTIAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0585982 | SBH | 0.000000 | 0.0 | 0.122853 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38650 | RBH | 0.197965 | 0.0 | 0.144837 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0585982 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020560 | SBH | 0.734050 | 0.000000 | 0.158246 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020720 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020830 | RBH | 0.318380 | 0.370122 | 1.666568 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364500 | SBH | 0.1244195 | 0.3588415 | 0.8038995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020290 | RBH | 0.0 | 0.0 | 0.326501 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0338500 | RBH | 0.340277 | 0.3180275 | 4.216307 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020750 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021030 | SBH | 0.0 | 0.000000 | 0.043257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020530 | RBH | 0.034766 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020430 | RBH | 0.0 | 0.0 | 0.610046 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020690 | SBH | 0.895413 | 10.598836 | 23.500162 |
