Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0534950 | OGI:06055620 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:20020490-20021315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATTTCGTAGCATTTCGTAGGAATTTGGCACGAAATAAATCAGTTCAAATCATCGGAGAAATCGCTGGTCGGGATGCCCGAGGCGGCGGCGGCGGAGGAGGAAGGCGGTGATGGCTGCTCGACGAGGCTAGGGTGCTACGGCTTCATGGCGGTGAACGTCCTGATGGGGCTGTACTGCTCCATCGCCTACGCCGTGAGCGCCACCGTGGCGGGCGCCGTCGCCGTCGCGGTCGCGCTCCTCCTGCTGGCGCTCGCCGGCAGGCTGGCGCAGACGACGGGAGGAGGCTCCGCCGCGGCGGCGGCGTCGGGGCGGCGGCGGCGGCTGCTGAGCTGCCCGTGCGCGTGCGGGCTGATGGCGCCCGGCGCGGGGGGGATCGGCGTGCTGCCGGCGTTCGCGTACGAGCCCGGCGGCGGCGGCGGCGGCGTGCTGTGCGCGGTGTGCCTGGAGGACTTGCGCGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCGGGCACCTGTTCCACGAGGACTGCGTCGACGTGTGGCTGCGCGTCCGCCGGACTTGCCCGCTCTGCCGCCGCGTGCTCCCGCCGCGCAAGTCCGTGGCGGCCGCGGCGGCGGCGTCGGCCGCTGTGCTGCCGCCTGTCTGATTCGGTAGTCGTTTCTGTTGTATCGTCGCAGTAAAATTAAGTGAAACTGCGCTCCTAATTTGCAGGTACAATGATTGTAATTGGGCTAAGATCTTTGTGGGTTCTATCAGTATTCAATGTAACCCCGTGTAGTGGAGTGGGATATCTACTTAATTAATACTAACTGTAAAATCATTAGAGAATAAAAGATTTTT
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| CDS seq | ATGCCCGAGGCGGCGGCGGCGGAGGAGGAAGGCGGTGATGGCTGCTCGACGAGGCTAGGGTGCTACGGCTTCATGGCGGTGAACGTCCTGATGGGGCTGTACTGCTCCATCGCCTACGCCGTGAGCGCCACCGTGGCGGGCGCCGTCGCCGTCGCGGTCGCGCTCCTCCTGCTGGCGCTCGCCGGCAGGCTGGCGCAGACGACGGGAGGAGGCTCCGCCGCGGCGGCGGCGTCGGGGCGGCGGCGGCGGCTGCTGAGCTGCCCGTGCGCGTGCGGGCTGATGGCGCCCGGCGCGGGGGGGATCGGCGTGCTGCCGGCGTTCGCGTACGAGCCCGGCGGCGGCGGCGGCGGCGTGCTGTGCGCGGTGTGCCTGGAGGACTTGCGCGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCGGGCACCTGTTCCACGAGGACTGCGTCGACGTGTGGCTGCGCGTCCGCCGGACTTGCCCGCTCTGCCGCCGCGTGCTCCCGCCGCGCAAGTCCGTGGCGGCCGCGGCGGCGGCGTCGGCCGCTGTGCTGCCGCCTGTCTGA
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| Protein seq | MPEAAAAEEEGGDGCSTRLGCYGFMAVNVLMGLYCSIAYAVSATVAGAVAVAVALLLLALAGRLAQTTGGGSAAAAASGRRRRLLSCPCACGLMAPGAGGIGVLPAFAYEPGGGGGGVLCAVCLEDLRGGEMVRRLPACGHLFHEDCVDVWLRVRRTCPLCRRVLPPRKSVAAAAAASAAVLPPV |
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| Function | RING-H2 finger protein ATL34 [UniProtKB/Swiss-Prot:Q9C7I1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0534950 | OsNip_06t0534950-00 | Chr06 | 20020490 | 20021315 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCCGAGGCGGCGGCGGCGGAGGAGGAAGGCGGTGATGGCTGCTCGACGAGGCTAGGGTGCTACGGCTTCATGGCGGTGAACGTCCTGATGGGGCTGTACTGCTCCATCGCCTACGCCGTGAGCGCCACCGTGGCGGGCGCCGTCGCCGTCGCGGTCGCGCTCCTCCTGCTGGCGCTCGCCGGCAGGCTGGCGCAGACGACGGGAGGAGGCTCCGCCGCGGCGGCGGCGTCGGGGCGGCGGCGGCGGCTGCTGAGCTGCCCGTGCGCGTGCGGGCTGATGGCGCCCGGCGCGGGGGGGATCGGCGTGCTGCCGGCGTTCGCGTACGAGCCCGGCGGCGGCGGCGGCGGCGTGCTGTGCGCGGTGTGCCTGGAGGACTTGCGCGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCGGGCACCTGTTCCACGAGGACTGCGTCGACGTGTGGCTGCGCGTCCGCCGGACTTGCCCGCTCTGCCGCCGCGTGCTCCCGCCGCGCAAGTCCGTGGCGGCCGCGGCGGCGGCGTCGGCCGCTGTGCTGCCGCCTGTCTGA
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| Protein seq | MPEAAAAEEEGGDGCSTRLGCYGFMAVNVLMGLYCSIAYAVSATVAGAVAVAVALLLLALAGRLAQTTGGGSAAAAASGRRRRLLSCPCACGLMAPGAGGIGVLPAFAYEPGGGGGGVLCAVCLEDLRGGEMVRRLPACGHLFHEDCVDVWLRVRRTCPLCRRVLPPRKSVAAAAAASAAVLPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0248200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34400 | SBH | 0.175492 | 0.203121 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0534950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018420 | RBH | 0.0 | 1.718868 | 0.532589 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018250 | RBH | 0.0 | 0.469611 | 0.139320 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018330 | SBH | 0.384498 | 0.515988 | 5.341099 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018190 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018570 | SBH | 0.747739 | 3.548754 | 2.726697 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0315200 | RBH | 2.6578805 | 3.982278 | 2.328368 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018060 | RBH | 0.0 | 0.342595 | 0.175688 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0290700 | RBH | 0.0593175 | 0.41654 | 0.081788 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018490 | RBH | 0.019882 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018430 | RBH | 0.067341 | 0.977566 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018080 | RBH | 18.862368 | 0.917908 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018830 | SBH | 0.000000 | 0.0 | 0.279381 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018270 | SBH | 0.073131 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018160 | SBH | 0.000000 | 0.0 | 0.117864 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018300 | SBH | 2.827293 | 0.0 | 0.703848 |
