Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_06g0296700 OGI:06028900 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr06:10957733-10960700
Gene Symbol -
DNA seq

CGACAGGGTGCTAAATTTACGATTTCGTCGAACCGACCTATATTTTTGCGATTTTCTATTAAAATCGTATTATTTTTTAAAAAAATTCCAAAAATAGCAACATTATTTCCTCGAAAAGGAGATAAGAAAAAAATGGCAGTACTTTTTGAGTGTTTGCTACACTTGAGCCCTCTAATCCGCTCGTTACCATGCCAACAACATCTAAGCTTGACTGCCGCCTTCTGGTAACCGAGAAGGCTGATCATTTCCTTGCCCCTGTTGCTGAGACCTTCTGACAAATGACAAAAACTTGTGGATTGCAGCACAGCCTAGTGCACCAATAACAAATGCAATGACATATCCAGAAGGTTCCCATCTCATGCTCGACCCAGCCACGTAGGCTAGCAGTAGGCCGAGCAAGTCCAGCACAATTGTAATATTCATCACCCTTAGCCACCTGTTCTTCTTTAGCAGTTCCGTCGGTAGCAATAGGATGATAACAACAATAGATGCCACAAAAGAAGTTGAGTTGCTGTAGAAGAAGGTGAGGTAGCGATACCTCTTATTGTCATGCATAACCGAGTGACCCACACCATGCCCGTCACTATTACCCTGCCACACACCGCCAGGTGGGTTCAGACCAGCCTGGGAGTAAGTAACACTTGCAGCCAGGACCCCTAGCAACATCAAGTACTTGCGCTTGGCATGGTATTTGGCTCTGTCCTTGTCTTTCTCAACGGGCTCCTTGGATATGTCATCTCGCTTCTCTTTGCTCTCACTTTGATAGAAACACACCAGGAGTATGATCATAATGAAAAGCACCACAGCTACCAACACAAAGACATAAATGGATGTTTTCAGATGTTGAGTGCTTCCGGCAGCATAGGCTCCCAGAAGAGCAAACAAGCCTGCTACAGTGCAAACCGAAAGAGCATAGCTTTGTATAGCTGGCCTATACAGATTTGGGTTCACGAGGAGTATGATGAGGGAAAGAGATGACATGAAGCTTACCGAGTTACAATAGAGAAATGCCTTGTAACGGCGTGGAAAGTTGTAAAAGAGTATTGGATCACCAGCATGGCGCCCAAAACCATCATCCACAACTCTGAACCCACCCGGTGGGGTCAACCCAGCTTGATAAGTGAGGGTCGCGCCCAAAACAGCGAAAAGGAGCAGCCTCTTGCGCCTTTTGTCAATACATGAATCTTTCTCAGCAAGATTGCCCTCAGCTGAATTATTTTGGGTGCGCACAACTGAACCATTTCGTACAGAATTCGTGTTCCCAACTTCCTTCTCCTTGTCATTGTCTTCAAGCGTGAAGAACACAACATGAATCACCACATAGACTAGAACACCGCCTGCCAAGGCAATGATGTAAACTGATGTGGTTATGTCCCGGCAGCTTCCAGCAGCATATGCACCCATGAGACCAAACAGATCCAAAATCATAGTTATCTCTAGAATGCGGCGCCTGAGCAAAGGTTTATACCGGACCAAAACTATGACAACCAATGATGCTGCAAAGGCTGTCGAGTTACAGTAAAAGAACACCTTGTAACGTTTGGCTTGTGTGGATAAGAGTATTGGTTCGCCAGCCATGTGCCCATCTTGGTTTTTCTGCCAGACACCACCTGGTGGGACTAGCCCTGCTTGGTAAGTAACAGTTGCCACAAGAGTGGCAAGCAGTACAACAAGAGATTGGGCCTTCTCCAGAATATCTGTCTTACTGCTTGTATTCTTTCTGGAACTGTTAATTCAAACAAAGTTAACATTAAACTAAAGATGGCAACAGGATAGGCAGCAGAAAAATGTTTGTGTTCAGTACCTGCTATCTGATGGCCCTCCCGGTGAACATGATAACTTTGCAATTATTGGCAAGCAGGATATGTTTGAAAGTTGTGGCAGAAAAAATAGGACTGCCTGGAGGGCGCCTATGCATAAAAGAACAGCACCAACCAGACTGAGTACATAGATGGTAGTGTCAGGCTTTCTGCAGCTGCCAGCCACATAGGCCCCCACAAGGCCTAAAAGAGCAATGGTGATGTACGCGTAGAGCACATAAGTCCGTACGGTGATGGTGATCTTTATCTTGTCGAGGGGTAAGAAGATCCGCTGCTTCTTGTCCAGAAGCAGCATGATGATGAGCAGGGATGCGACAAATGCAATTGTGTTGCAGACAAAGAACGCCCTCAGACGGCGAGAGTGGTGTTCCCACAGGACGGGATCGCCTGGATGGTGGCCCTCCTGGTTGTTATCCCAGTAGCCACCCGGTGCGCTCAGCCCAGCCATGTATGTGATGCTTGCCACAAATGTTGCGAGAAGCATCAGTACCTTGCGGTGCCGTTTTTTCTTCTCATCACCTGGTCAATTTCCCCTCTGAATATTGACATGGTCCATATTTAGTGCGCTGAATTAGGAGGATTAGTAGATTACCTGAGCTTATATCCTGAGTCTGTTTCTTGTCAAGCCATAAAGTTACCACCATCTGTGCCACCATATAGATGAAAGTAGCCACAAGTGCAGAGACGTTGCCGGCTGTGAGAACACCCCGACTGGTCCCTGCAGCATAGGCCCCAATGAGGCTTAGCAGGTCCAGCACCATGGCTGCTCGCAGTGGAAGCATGGGGATCTGTAACTTCCCCTTCTCATGCAGGATAGCAAGGATGAAGATGAGGATGATGACCACGATGGACAGCGCGAATGCAGTCGCGTTGCAGTAGAAGAACATAAGGTATCGGCGATACTGGCTATCCCGGATGATGGAGTCACCAGCGAGGTGCCCGGCCTCGGTGTCCTGCCAGACACCCCCCGGCGGGCTGAATCCTGCACCATATGTCACCGTGGCCACAAGGGTGGCCAACAGAAGGAGGTACTTCCTCAAATCATACTCCAATGGTGAGTCCGTCCTCTCTTGCTCGCTATTCTCCATTTGCAGGAGAGATAGAAGCAGAAAGGAGGTACTCCAAGTTGTGAATGGATCAATGCTAAT

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CDS seq

ATGGAGAATAGCGAGCAAGAGAGGACGGACTCACCATTGGAGTATGATTTGAGGAAGTACCTCCTTCTGTTGGCCACCCTTGTGGCCACGGTGACATATGGTGCAGGATTCAGCCCGCCGGGGGGTGTCTGGCAGGACACCGAGGCCGGGCACCTCGCTGGTGACTCCATCATCCGGGATAGCCAGTATCGCCGATACCTTATGTTCTTCTACTGCAACGCGACTGCATTCGCGCTGTCCATCGTGGTCATCATCCTCATCTTCATCCTTGCTATCCTGCATGAGAAGGGGAAGTTACAGATCCCCATGCTTCCACTGCGAGCAGCCATGGTGCTGGACCTGCTAAGCCTCATTGGGGCCTATGCTGCAGGGACCAGTCGGGGTGTTCTCACAGCCGGCAACGTCTCTGCACTTGTGGCTACTTTCATCTATATGGTGGCACAGATGGTGGTAACTTTATGGCTTGACAAGAAACAGACTCAGGATATAAGCTCAGGTGATGAGAAGAAAAAACGGCACCGCAAGGTACTGATGCTTCTCGCAACATTTGTGGCAAGCATCACATACATGGCTGGGCTGAGCGCACCGGGTGGCTACTGGGATAACAACCAGGAGGGCCACCATCCAGGCGATCCCGTCCTGTGGGAACACCACTCTCGCCGTCTGAGGGCGTTCTTTGTCTGCAACACAATTGCATTTGTCGCATCCCTGCTCATCATCATGCTGCTTCTGGACAAGAAGCAGCGGATCTTCTTACCCCTCGACAAGATAAAGATCACCATCACCGTACGGACTTATGTGCTCTACGCGTACATCACCATTGCTCTTTTAGGCCTTGTGGGGGCCTATGTGGCTGGCAGCTGCAGAAAGCCTGACACTACCATCTATGTACTCAGTCTGGTTGGTGCTGTTCTTTTATGCATAGGCGCCCTCCAGGCAGTCCTATTTTTTCTGCCACAACTTTCAAACATATCCTGCTTGCCAATAATTGCAAAGTTATCATGTTCACCGGGAGGGCCATCAGATAGCAGTTCCAGAAAGAATACAAGCAGTAAGACAGATATTCTGGAGAAGGCCCAATCTCTTGTTGTACTGCTTGCCACTCTTGTGGCAACTGTTACTTACCAAGCAGGGCTAGTCCCACCAGGTGGTGTCTGGCAGAAAAACCAAGATGGGCACATGGCTGGCGAACCAATACTCTTATCCACACAAGCCAAACGTTACAAGGTGTTCTTTTACTGTAACTCGACAGCCTTTGCAGCATCATTGGTTGTCATAGTTTTGGTCCGGTATAAACCTTTGCTCAGGCGCCGCATTCTAGAGATAACTATGATTTTGGATCTGTTTGGTCTCATGGGTGCATATGCTGCTGGAAGCTGCCGGGACATAACCACATCAGTTTACATCATTGCCTTGGCAGGCGGTGTTCTAGTCTATGTGGTGATTCATGTTGTGTTCTTCACGCTTGAAGACAATGACAAGGAGAAGGAAGTTGGGAACACGAATTCTGTACGAAATGGTTCAGTTGTGCGCACCCAAAATAATTCAGCTGAGGGCAATCTTGCTGAGAAAGATTCATGTATTGACAAAAGGCGCAAGAGGCTGCTCCTTTTCGCTGTTTTGGGCGCGACCCTCACTTATCAAGCTGGGTTGACCCCACCGGGTGGGTTCAGAGTTGTGGATGATGGTTTTGGGCGCCATGCTGGTGATCCAATACTCTTTTACAACTTTCCACGCCGTTACAAGGCATTTCTCTATTGTAACTCGGTAAGCTTCATGTCATCTCTTTCCCTCATCATACTCCTCGTGAACCCAAATCTGTATAGGCCAGCTATACAAAGCTATGCTCTTTCGGTTTGCACTGTAGCAGGCTTGTTTGCTCTTCTGGGAGCCTATGCTGCCGGAAGCACTCAACATCTGAAAACATCCATTTATGTCTTTGTGTTGGTAGCTGTGGTGCTTTTCATTATGATCATACTCCTGGTGTGTTTCTATCAAAGTGAGAGCAAAGAGAAGCGAGATGACATATCCAAGGAGCCCGTTGAGAAAGACAAGGACAGAGCCAAATACCATGCCAAGCGCAAGTACTTGATGTTGCTAGGGGTCCTGGCTGCAAGTGTTACTTACTCCCAGGCTGGTCTGAACCCACCTGGCGGTGTGTGGCAGGGTAATAGTGACGGGCATGGTGTGGGTCACTCGGTTATGCATGACAATAAGAGGTATCGCTACCTCACCTTCTTCTACAGCAACTCAACTTCTTTTGTGGCATCTATTGTTGTTATCATCCTATTGCTACCGACGGAACTGCTAAAGAAGAACAGGTGGCTAAGGGTGATGAATATTACAATTGTGCTGGACTTGCTCGGCCTACTGCTAGCCTACGTGGCTGGGTCGAGCATGAGATGGGAACCTTCTGGATATGTCATTGCATTTGTTATTGGTGCACTAGGCTGTGCTGCAATCCACAAGTTTTTGTCATTTGTCAGAAGGTCTCAGCAACAGGGGCAAGGAAATGATCAGCCTTCTCGGTTACCAGAAGGCGGCAGTCAAGCTTAG

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Protein seq

MENSEQERTDSPLEYDLRKYLLLLATLVATVTYGAGFSPPGGVWQDTEAGHLAGDSIIRDSQYRRYLMFFYCNATAFALSIVVIILIFILAILHEKGKLQIPMLPLRAAMVLDLLSLIGAYAAGTSRGVLTAGNVSALVATFIYMVAQMVVTLWLDKKQTQDISSGDEKKKRHRKVLMLLATFVASITYMAGLSAPGGYWDNNQEGHHPGDPVLWEHHSRRLRAFFVCNTIAFVASLLIIMLLLDKKQRIFLPLDKIKITITVRTYVLYAYITIALLGLVGAYVAGSCRKPDTTIYVLSLVGAVLLCIGALQAVLFFLPQLSNISCLPIIAKLSCSPGGPSDSSSRKNTSSKTDILEKAQSLVVLLATLVATVTYQAGLVPPGGVWQKNQDGHMAGEPILLSTQAKRYKVFFYCNSTAFAASLVVIVLVRYKPLLRRRILEITMILDLFGLMGAYAAGSCRDITTSVYIIALAGGVLVYVVIHVVFFTLEDNDKEKEVGNTNSVRNGSVVRTQNNSAEGNLAEKDSCIDKRRKRLLLFAVLGATLTYQAGLTPPGGFRVVDDGFGRHAGDPILFYNFPRRYKAFLYCNSVSFMSSLSLIILLVNPNLYRPAIQSYALSVCTVAGLFALLGAYAAGSTQHLKTSIYVFVLVAVVLFIMIILLVCFYQSESKEKRDDISKEPVEKDKDRAKYHAKRKYLMLLGVLAASVTYSQAGLNPPGGVWQGNSDGHGVGHSVMHDNKRYRYLTFFYSNSTSFVASIVVIILLLPTELLKKNRWLRVMNITIVLDLLGLLLAYVAGSSMRWEPSGYVIAFVIGALGCAAIHKFLSFVRRSQQQGQGNDQPSRLPEGGSQA

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_06g0296700 OsNip_06t0296700-01 Chr06 10957733 10960700 - RAP2018-11-26
CDS seq

ATGGAGAATAGCGAGCAAGAGAGGACGGACTCACCATTGGAGTATGATTTGAGGAAGTACCTCCTTCTGTTGGCCACCCTTGTGGCCACGGTGACATATGGTGCAGGATTCAGCCCGCCGGGGGGTGTCTGGCAGGACACCGAGGCCGGGCACCTCGCTGGTGACTCCATCATCCGGGATAGCCAGTATCGCCGATACCTTATGTTCTTCTACTGCAACGCGACTGCATTCGCGCTGTCCATCGTGGTCATCATCCTCATCTTCATCCTTGCTATCCTGCATGAGAAGGGGAAGTTACAGATCCCCATGCTTCCACTGCGAGCAGCCATGGTGCTGGACCTGCTAAGCCTCATTGGGGCCTATGCTGCAGGGACCAGTCGGGGTGTTCTCACAGCCGGCAACGTCTCTGCACTTGTGGCTACTTTCATCTATATGGTGGCACAGATGGTGGTAACTTTATGGCTTGACAAGAAACAGACTCAGGATATAAGCTCAGGTGATGAGAAGAAAAAACGGCACCGCAAGGTACTGATGCTTCTCGCAACATTTGTGGCAAGCATCACATACATGGCTGGGCTGAGCGCACCGGGTGGCTACTGGGATAACAACCAGGAGGGCCACCATCCAGGCGATCCCGTCCTGTGGGAACACCACTCTCGCCGTCTGAGGGCGTTCTTTGTCTGCAACACAATTGCATTTGTCGCATCCCTGCTCATCATCATGCTGCTTCTGGACAAGAAGCAGCGGATCTTCTTACCCCTCGACAAGATAAAGATCACCATCACCGTACGGACTTATGTGCTCTACGCGTACATCACCATTGCTCTTTTAGGCCTTGTGGGGGCCTATGTGGCTGGCAGCTGCAGAAAGCCTGACACTACCATCTATGTACTCAGTCTGGTTGGTGCTGTTCTTTTATGCATAGGCGCCCTCCAGGCAGTCCTATTTTTTCTGCCACAACTTTCAAACATATCCTGCTTGCCAATAATTGCAAAGTTATCATGTTCACCGGGAGGGCCATCAGATAGCAGTTCCAGAAAGAATACAAGCAGTAAGACAGATATTCTGGAGAAGGCCCAATCTCTTGTTGTACTGCTTGCCACTCTTGTGGCAACTGTTACTTACCAAGCAGGGCTAGTCCCACCAGGTGGTGTCTGGCAGAAAAACCAAGATGGGCACATGGCTGGCGAACCAATACTCTTATCCACACAAGCCAAACGTTACAAGGTGTTCTTTTACTGTAACTCGACAGCCTTTGCAGCATCATTGGTTGTCATAGTTTTGGTCCGGTATAAACCTTTGCTCAGGCGCCGCATTCTAGAGATAACTATGATTTTGGATCTGTTTGGTCTCATGGGTGCATATGCTGCTGGAAGCTGCCGGGACATAACCACATCAGTTTACATCATTGCCTTGGCAGGCGGTGTTCTAGTCTATGTGGTGATTCATGTTGTGTTCTTCACGCTTGAAGACAATGACAAGGAGAAGGAAGTTGGGAACACGAATTCTGTACGAAATGGTTCAGTTGTGCGCACCCAAAATAATTCAGCTGAGGGCAATCTTGCTGAGAAAGATTCATGTATTGACAAAAGGCGCAAGAGGCTGCTCCTTTTCGCTGTTTTGGGCGCGACCCTCACTTATCAAGCTGGGTTGACCCCACCGGGTGGGTTCAGAGTTGTGGATGATGGTTTTGGGCGCCATGCTGGTGATCCAATACTCTTTTACAACTTTCCACGCCGTTACAAGGCATTTCTCTATTGTAACTCGGTAAGCTTCATGTCATCTCTTTCCCTCATCATACTCCTCGTGAACCCAAATCTGTATAGGCCAGCTATACAAAGCTATGCTCTTTCGGTTTGCACTGTAGCAGGCTTGTTTGCTCTTCTGGGAGCCTATGCTGCCGGAAGCACTCAACATCTGAAAACATCCATTTATGTCTTTGTGTTGGTAGCTGTGGTGCTTTTCATTATGATCATACTCCTGGTGTGTTTCTATCAAAGTGAGAGCAAAGAGAAGCGAGATGACATATCCAAGGAGCCCGTTGAGAAAGACAAGGACAGAGCCAAATACCATGCCAAGCGCAAGTACTTGATGTTGCTAGGGGTCCTGGCTGCAAGTGTTACTTACTCCCAGGCTGGTCTGAACCCACCTGGCGGTGTGTGGCAGGGTAATAGTGACGGGCATGGTGTGGGTCACTCGGTTATGCATGACAATAAGAGGTATCGCTACCTCACCTTCTTCTACAGCAACTCAACTTCTTTTGTGGCATCTATTGTTGTTATCATCCTATTGCTACCGACGGAACTGCTAAAGAAGAACAGGTGGCTAAGGGTGATGAATATTACAATTGTGCTGGACTTGCTCGGCCTACTGCTAGCCTACGTGGCTGGGTCGAGCATGAGATGGGAACCTTCTGGATATGTCATTGCATTTGTTATTGGTGCACTAGGCTGTGCTGCAATCCACAAGTTTTTGTCATTTGTCAGAAGGTCTCAGCAACAGGGGCAAGGAAATGATCAGCCTTCTCGGTTACCAGAAGGCGGCAGTCAAGCTTAG

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Protein seq

MENSEQERTDSPLEYDLRKYLLLLATLVATVTYGAGFSPPGGVWQDTEAGHLAGDSIIRDSQYRRYLMFFYCNATAFALSIVVIILIFILAILHEKGKLQIPMLPLRAAMVLDLLSLIGAYAAGTSRGVLTAGNVSALVATFIYMVAQMVVTLWLDKKQTQDISSGDEKKKRHRKVLMLLATFVASITYMAGLSAPGGYWDNNQEGHHPGDPVLWEHHSRRLRAFFVCNTIAFVASLLIIMLLLDKKQRIFLPLDKIKITITVRTYVLYAYITIALLGLVGAYVAGSCRKPDTTIYVLSLVGAVLLCIGALQAVLFFLPQLSNISCLPIIAKLSCSPGGPSDSSSRKNTSSKTDILEKAQSLVVLLATLVATVTYQAGLVPPGGVWQKNQDGHMAGEPILLSTQAKRYKVFFYCNSTAFAASLVVIVLVRYKPLLRRRILEITMILDLFGLMGAYAAGSCRDITTSVYIIALAGGVLVYVVIHVVFFTLEDNDKEKEVGNTNSVRNGSVVRTQNNSAEGNLAEKDSCIDKRRKRLLLFAVLGATLTYQAGLTPPGGFRVVDDGFGRHAGDPILFYNFPRRYKAFLYCNSVSFMSSLSLIILLVNPNLYRPAIQSYALSVCTVAGLFALLGAYAAGSTQHLKTSIYVFVLVAVVLFIMIILLVCFYQSESKEKRDDISKEPVEKDKDRAKYHAKRKYLMLLGVLAASVTYSQAGLNPPGGVWQGNSDGHGVGHSVMHDNKRYRYLTFFYSNSTSFVASIVVIILLLPTELLKKNRWLRVMNITIVLDLLGLLLAYVAGSSMRWEPSGYVIAFVIGALGCAAIHKFLSFVRRSQQQGQGNDQPSRLPEGGSQA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.345541 0.431254 0.632676

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g19260 RBH 0.233673 0.418060 0.162863
Nipponbare | IRGSP 1.0 | RAP-db Os06g0296700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0012220 RBH 0.036248 0.500697 0.212350
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0012080 RBH 0.0 0.000000 0.172909
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0012100 RBH 0.0 1.216275 0.904599
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0012160 SBH 0.026704 0.016078 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0012280 RBH 0.0 1.317722 0.793076
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0179300 RBH 0.397658 1.959379 0.545664
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0011750 SBH 0.036395 0.208633 0.023179
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0175000 RBH 0.5291795 6.2620295 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0012310 RBH 0.0 0.076038 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0012170 RBH 0.0 0.576428 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0011990 SBH 0.000000 2.408634 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0012400 RBH 0.0 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0012080 RBH 0.0 0.260799 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G011910 RBH 0.000000 0.166529 0.066438
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0012250 SBH 0.0 0.0 0.618128
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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