Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0250300 | OGI:06012140 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:7789570-7789983 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTGAGAGAGCGCCATTTGAGTTGAGATGGACGCCGTTGGTGGCGGGAAGGTGAAGAAGGCGGCGGGCGGGAGGAAGGCCGGCGGGCCGAGGAAGAAGGCGGTGACACGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAACCGTCGGCCGGTCGATCTCATCTCCGCCGCTCCTTCCCCGTTAGCCGCCCCGACCCTCTTCCCCACCACGTCGGTGACGCCGTCGACCCTCTTTCCCATCGCGTCGGTGACGCCGCCGCCGCCACCGCATCGGCCCTCCTCTCTGCGTCAGTGATGATGGCCGCAGCCGCGTGTCGCCGTCGCCGACCGCACGAGGGGGACGGGGAGGCCGGCGAGCTCACACCGCCTTGAGCCCACGCGCCGCCACC
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| CDS seq | ATGGACGCCGTTGGTGGCGGGAAGGTGAAGAAGGCGGCGGGCGGGAGGAAGGCCGGCGGGCCGAGGAAGAAGGCGGTGACACGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAACCGTCGGCCGGTCGATCTCATCTCCGCCGCTCCTTCCCCGTTAGCCGCCCCGACCCTCTTCCCCACCACGTCGGTGACGCCGTCGACCCTCTTTCCCATCGCGTCGGTGACGCCGCCGCCGCCACCGCATCGGCCCTCCTCTCTGCGTCAGTGA |
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| Protein seq | MDAVGGGKVKKAAGGRKAGGPRKKAVTRSVKAGLQFPVGRIGRYLKNRRPVDLISAAPSPLAAPTLFPTTSVTPSTLFPIASVTPPPPPHRPSSLRQ |
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| Function | Probable histone H2A.6 [UniProtKB/Swiss-Prot:Q75L11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0250300 | OsNip_06t0250300-00 | Chr06 | 7789570 | 7789983 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACGCCGTTGGTGGCGGGAAGGTGAAGAAGGCGGCGGGCGGGAGGAAGGCCGGCGGGCCGAGGAAGAAGGCGGTGACACGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGGCGCTACCTCAAGAACCGTCGGCCGGTCGATCTCATCTCCGCCGCTCCTTCCCCGTTAGCCGCCCCGACCCTCTTCCCCACCACGTCGGTGACGCCGTCGACCCTCTTTCCCATCGCGTCGGTGACGCCGCCGCCGCCACCGCATCGGCCCTCCTCTCTGCGTCAGTGA
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| Protein seq | MDAVGGGKVKKAAGGRKAGGPRKKAVTRSVKAGLQFPVGRIGRYLKNRRPVDLISAAPSPLAAPTLFPTTSVTPSTLFPIASVTPPPPPHRPSSLRQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0250300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010020 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005840 | RBH | 0.0 | 0.0 | 0.299321 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005810 | RBH | 0.0 | 0.0 | 0.612039 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0009900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005880 | RBH | 0.577725 | 0.0 | 2.480552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0129500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0071900 | RBH | 0.095538 | 0 | 0.605778 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006070 | RBH | 0.0 | 0.219615 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0009840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005940 | RBH | 0.0 | 13.154690 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005970 | RBH | 0.000000 | 0.0 | 0.377965 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005820 | RBH | 0.219908 | 5.452545 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005250 | RBH | 0.0 | 0.0 | 0.0 |
