Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0006070 | OGI:06012140 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:4381263-4381502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacatgaagaaaaagaagctcacctctgcggcaaggtactcgaggacggcagcgaggtacacgggggcgccggagccgacgcgctgcgcgtatcggcctttcttgaggtagcgcccgatacggccgacggggaactggaacccggccttgacggagcgcgtcaccgccttcttcctcggcccgccggccttccttccaccagccgccttcttcagcttcccgccgccggcgccgtccat |
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| CDS seq | atggacggcgccggcggcgggaagctgaagaaggcggctggtggaaggaaggccggcgggccgaggaagaaggcggtgacgcgctccgtcaaggccgggttccagttccccgtcggccgtatcgggcgctacctcaagaaaggccgatacgcgcagcgcgtcggctccggcgcccccgtgtacctcgctgccgtcctcgagtaccttgccgcagaggtgagcttctttttcttcatgtag |
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| Protein seq | MDGAGGGKLKKAAGGRKAGGPRKKAVTRSVKAGFQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVSFFFFM |
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| Function | Histone H2A [UniProtKB/Swiss-Prot:Q9M531] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0006070 | OsLima_06g0006070.01 | Chr06 | 4381263 | 4381502 | - | NAM | ||
| CDS seq | atggacggcgccggcggcgggaagctgaagaaggcggctggtggaaggaaggccggcgggccgaggaagaaggcggtgacgcgctccgtcaaggccgggttccagttccccgtcggccgtatcgggcgctacctcaagaaaggccgatacgcgcagcgcgtcggctccggcgcccccgtgtacctcgctgccgtcctcgagtaccttgccgcagaggtgagcttctttttcttcatgtag
More
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| Protein seq | MDGAGGGKLKKAAGGRKAGGPRKKAVTRSVKAGFQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVSFFFFM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.219615 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0250300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17100 | SBH | 2.378069 | 2.904165 | 6.748287 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0250300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006000 | RBH | 0.128433 | 7.566829 | 0.096250 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005840 | RBH | 0.0 | 0.0 | 0.299321 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005810 | RBH | 0.0 | 0.0 | 0.612039 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005880 | RBH | 0.577725 | 0.0 | 2.480552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0072600 | RBH | 0.6662605 | 1.1937495 | 2.0557255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0071900 | RBH | 0.095538 | 0 | 0.605778 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017840 | SBH | 0.000000 | 0.910312 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005940 | RBH | 0.0 | 13.154690 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005970 | RBH | 0.000000 | 0.0 | 0.377965 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005820 | RBH | 0.219908 | 5.452545 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012650 | SBH | 1.131681 | 53.276123 | 15.818140 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017890 | SBH | 0.591840 | 35.870361 | 2.398382 |
