Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0178400 | OGI:01040660 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3891331-3892009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTTGGATTGAGGCGGTAGCTTGTCAGTGGGGGAAGCTCAGGCTGCCGAAGCAATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGAAGTCGGCCGATGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGTCCCAAGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGACAGCGGCTACGTCTTCGGGCGTCGTAATTTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACCACATCTTTTTAGATGGGCGATGGCGGCATCCTGGATGTCGTGACCACCATGGTGGCATCGTTTTCGGAGCCTCGTCTCTGTGGTGTTGCCGTAGGCCTAGCGGCGTTCGGCCACATTTAGCGGGGGTCGTTTGGTGCTAGGTTTCACCCTCAGCGGTTTGTGCTTGGGTGGTAGTGTGTGGTGTGTGGCAATGCACCTTGGTGCATTTTGATGTTTTTTCTCTTGTAACTTTTATTCCTTCTTAATATACTCGGTTGGCCTCCTTCGGCCTTCCCGGC
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| CDS seq | ATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGAAGTCGGCCGATGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGTCCCAAGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGACAGCGGCTACGTCTTCGGGCGTCGTAATTTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACCACATCTTTTTAG |
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| Protein seq | MPPSPGFSFGQIWRGGRRVVERRSPGPALRGGGSLKSADGGASVRCGGCHVLPFVCVVVLSWWTAICSQGCRVPSESLVRWFTGPTAATSSGVVISLERCRGLPSPFLGELLWVKTTSF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0178400 | OsNip_06t0178400-01 | Chr06 | 3891331 | 3892009 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTCTCAGGGGTGGTGGTTCGTTGAAGTCGGCCGATGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGTCCCAAGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGACAGCGGCTACGTCTTCGGGCGTCGTAATTTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACCACATCTTTTTAG
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| Protein seq | MPPSPGFSFGQIWRGGRRVVERRSPGPALRGGGSLKSADGGASVRCGGCHVLPFVCVVVLSWWTAICSQGCRVPSESLVRWFTGPTAATSSGVVISLERCRGLPSPFLGELLWVKTTSF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.508017 | 3.027465 | 2.606866 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0176600 | RBH | 2.374669 | 2.484121 | 2.537997 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0176600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016280 | SBH | 0.676248 | 1.209810 | 0.303384 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005070 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032260 | SBH | 3.620402 | 0.000000 | 3.494612 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0075400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031970 | SBH | 0.000000 | 0.000000 | 0.406282 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023150 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032430 | SBH | 8.077785 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031701 | SBH | 1.204601 | 0.0 | 1.408967 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032330 | SBH | 0.0 | 4.938541 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
