Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0166400 | OGI:06009790 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3337151-3338155 | ||||||||
| Gene Symbol | ERF7, OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158, AP2/EREBP101, ERF143, AP2/EREBP#101, OsERF#143, OsERF143, ERF16, OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55, ERF15, OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102, ERF14, OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103, ERF119, OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104, DLN161, OsDLN161, ERF13, OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143 | ||||||||||
| DNA seq | ATTCCGCGAGGATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAGTAATCCGTGCTAATTTTGCCTCCCTTCTTCCATCCATCTAGTTCGTAGTCCTTAGCCACCCCAAGACACAGAGAGAGAGAGAGAGTAGCAGCTAGTAGCTATAGCTAGTCAGCGAAGCAGATAGCGCCAAGGAGGCGGTCGTGGACGGGGCGCATGCAAGGTGTTCGGCGAAATGCGATTGAGGTCGGAGGAGCCCACAAGTATATCCAATAATGGAGCCGCGACGTCGCCGTCAAGCCGGGGAAGTGGTGGTTAGCAAGTAGGAATCTAGAGCTCAGCTCGTCGTCTGTTCCGGCGACGGCGACTGTACTAGGAGCGTGCGTGTCAGCGTGAGCATGTAGCTAAAAGCAAGACGGCTATGTACCTCACCCTTTTCGCTTAAGCGTTTGTTTGTAAAGAGAAGATACCCAGCAAGCAAGACAAAAAAAACAGCTTCAAG
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| CDS seq | ATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAG
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| Protein seq | MDRREATVFLPPPPPPQPTQPQQQPAAAAVRAPVGGRGGGGGRQYRGVRMRKWGKWVAEIREPNKRSRIWLGSYSTAVAAARAYDTAVFYLRGRSARLNFPDQLDGAGGGGAGAGGAEDHRELTAAVIRKKAAEVGARVDAQHSVVGAAAPVPLQPPQPPPPQRRRTKNPDLNREPTPDTSDDE |
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| Function | Ethylene-responsive transcription factor ERF008 [UniProtKB/Swiss-Prot:O22174] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0166400 | OsNip_06t0166400-01 | Chr06 | 3337151 | 3338155 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAG
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| Protein seq | MDRREATVFLPPPPPPQPTQPQQQPAAAAVRAPVGGRGGGGGRQYRGVRMRKWGKWVAEIREPNKRSRIWLGSYSTAVAAARAYDTAVFYLRGRSARLNFPDQLDGAGGGGAGAGGAEDHRELTAAVIRKKAAEVGARVDAQHSVVGAAAPVPLQPPQPPPPQRRRTKNPDLNREPTPDTSDDE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.692589 | 1.494779 | 1.926731 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07030 | RBH | 0.325160 | 0.660386 | 0.451119 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0166400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004880 | RBH | 1.391230 | 0.0 | 3.666171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004790 | RBH | 0.0 | 1.666003 | 1.235636 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004730 | RBH | 2.622277 | 13.085611 | 1.852983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004920 | RBH | 0.254022 | 0.086745 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004810 | RBH | 6.570441 | 6.757447 | 1.490945 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0058000 | RBH | 3.440272 | 37.8507535 | 121.7390215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004670 | RBH | 0.0 | 0.575138 | 0.265446 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057700 | RBH | 14.4271005 | 115.867283 | 7.7838205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004930 | RBH | 0.060870 | 0.564055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004770 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004780 | RBH | 5.211797 | 32.719025 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004810 | RBH | 0.166059 | 0.131036 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004680 | RBH | 0.345949 | 5.062895 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004560 | RBH | 0.919410 | 0.0 | 0.780434 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004840 | RBH | 1.572507 | 34.837963 | 1.420280 |
