Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_06g0004670 | OGI:06009790 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr06:3997928-3998482 | ||||||||
| Gene Symbol | ERF7, OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142, DLN158, OsDLN158 | ||||||||||
| DNA seq | ATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAG
More
|
||||||||||
| CDS seq | ATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAG
More
|
||||||||||
| Protein seq | MDRREATVFLPPPPPPQPTQPQQQPAAAAVRAPVGGRGGGGGRQYRGVRMRKWGKWVAEIREPNKRSRIWLGSYSTAVAAARAYDTAVFYLRGRSARLNFPDQLDGAGGGGAGAGGAEDHRELTAAVIRKKAAEVGARVDAQHSVVGAAAPVPLQPPQPPPPQRRRTKNPDLNREPTPDTSDDE |
||||||||||
| Function | Ethylene-responsive transcription factor ERF008 [UniProtKB/Swiss-Prot:O22174] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0004670 | OsIR64_06g0004670.01 | Chr06 | 3997928 | 3998482 | + | NAM | ||
| CDS seq | ATGGATAGGAGGGAGGCCACCGTCTTCTTGCCCCCGCCGCCGCCACCGCAGCCGACGCAGCCGCAGCAGCAGCCTGCGGCGGCGGCGGTGAGGGCTCCGGTAGGCGGGAGGGGTGGGGGAGGAGGGAGGCAGTATCGCGGGGTGCGGATGCGGAAGTGGGGGAAGTGGGTGGCGGAGATCCGCGAGCCGAACAAGCGGTCGCGGATCTGGCTCGGCTCCTACTCCACCGCCGTCGCCGCCGCGCGGGCCTACGACACCGCCGTGTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCGACGGCGCGGGTGGTGGTGGCGCGGGCGCCGGCGGCGCCGAGGACCACAGGGAGCTCACCGCCGCCGTCATCCGCAAGAAGGCCGCCGAGGTCGGCGCCCGCGTCGACGCGCAGCACTCCGTCGTCGGCGCCGCGGCGCCCGTGCCGCTCCAGCCGCCGCAGCCCCCGCCGCCCCAGCGCCGCCGGACCAAGAACCCCGACCTCAACCGGGAGCCCACCCCGGACACCTCCGACGACGAGTAG
More
|
|||||||
| Protein seq | MDRREATVFLPPPPPPQPTQPQQQPAAAAVRAPVGGRGGGGGRQYRGVRMRKWGKWVAEIREPNKRSRIWLGSYSTAVAAARAYDTAVFYLRGRSARLNFPDQLDGAGGGGAGAGGAEDHRELTAAVIRKKAAEVGARVDAQHSVVGAAAPVPLQPPQPPPPQRRRTKNPDLNREPTPDTSDDE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.575138 | 0.265446 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0166400 | RBH | 0.692589 | 1.494779 | 1.926731 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07030 | RBH | 0.325160 | 0.660386 | 0.451119 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0166400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004880 | RBH | 1.391230 | 0.0 | 3.666171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004790 | RBH | 0.0 | 1.666003 | 1.235636 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004730 | RBH | 2.622277 | 13.085611 | 1.852983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004920 | RBH | 0.254022 | 0.086745 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004810 | RBH | 6.570441 | 6.757447 | 1.490945 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0058000 | RBH | 3.440272 | 37.8507535 | 121.7390215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057700 | RBH | 14.4271005 | 115.867283 | 7.7838205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004930 | RBH | 0.060870 | 0.564055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004770 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004780 | RBH | 5.211797 | 32.719025 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004810 | RBH | 0.166059 | 0.131036 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004680 | RBH | 0.345949 | 5.062895 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004560 | RBH | 0.919410 | 0.0 | 0.780434 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004840 | RBH | 1.572507 | 34.837963 | 1.420280 |
