Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0582500 | OGI:05078460 | 9/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:28995973-28997546 | ||||||||
| Gene Symbol | SCP29, OsSCP29 | ||||||||||
| DNA seq | AAGCACACCGGCTCGATCAGCTGTCAACACTAATCGAAACCTCCTTGCAAAATTGCAAATTTGCAATACATCACTCAGCCGATAAGCCACGTTGAGCCCGCGACAGCCGACGCGGGCGCGCCATGGCAGTGGCACCTCCTTCGCCGCTGTCCCTCGTCTTCGTCGTCCTCGCGGCCGTCTCGCTCTCGGCCTCGGCGGCCGCCGCACCGGCGTCGGTATTGCCCAGAGGAGCCATCCCGACCAAGTCGGGCTACCTCCCCATCCCGCCGGCAAACGCTTCGCTCTACTTCGCCTTCTACGAGGCCACCGAGCCGGTGACACCGCCCGCCACCACGCCGCTTCTCGTCTGGCTGGAGGGCGGCCCCGGCTGCTCCGGCTTCCTCAGCAACTTCCTCCAGATCGGCCCTTACCTTCTCGCCGGCGGCTCACTGTCTCCCAACCCCTTCGCGTGGAACCGCCGCTTTGGTCTCCTCTTCATCGACAGCCCGCTCGGCACCGGCTTCAGCGTCGCGCCTTCCCCCGCCGCCATCCCCACCAACCAGTCCGTCGTCGCCGACCACGTCCTCGCCGCGCTCCAGTCCTTGTACTCCCTCGAGCCGAGCTTCCGTGCCCGCCCTCTGTACCTCACCGGCGAGAGCTACGCCGGCAAGACCATCCCCGCGGCCGGCGCGCTCATAGTAGCAACAAACCCGACGTTGCCGGAGAAGAAGAGGATTAACCTGCGCGGCGTGGCCATCGGCAACGGGATGACGCACCCGGTCACGCAGGTGACCACGCACGCGGACATCGCCTACTTCATGGGCCTGATCAACGGGAAGCAGAAGCGGGAGGTGGAGGCGATGCAGGCGAGGGCGGTGGAGCTGATCAAGGCGGAGAGGTGGAGCGAGGCGTACGTCGCGCGGGAGGGCCTTCTGAAGTGGATGGAGAACGCCTCCGGTGTGCCGTCGCTGTTCGACGTGGAGGTGACGACGTCGCTGGAGGCGGAGGCCGCGGCGCTCGCGCCGCTGCTGAACGGCGCCGAGGCGAAGGCGGCGCTGGGCGCGCGGGGCGACGCGGAGTGGAAGATGTGCAGCGCGGCGGTGGGCGCGGCGCAGCACAAGGACGTGATGAAGAGCGTGAAGCCGGAGGTGGAGGCGCTGCTGCGGCGTGGGACGACGCCGACGCGCGTGCTGCTGTACGGCGGGATCCGCGACGTGAAGGACGGGCCGGTGTCCACGGAGGCGTGGGTTCGGGAGCTGGAGTGGGACGGCCTCGCCGCGTTCCAGGACGCCGACCGCGCCGTGTGGCGACACCGAGGCGGCGAGCTCGCCGGGAGCGTGCAGCGCCACGGCGCGCTCGTGAACGTTGCGGTGTATGGCGCGGGGCACTTCGTGCCGTTTTCTCAAGGGCGCGCGGCGCAGGAGATGATCGAGGATTGGGTGTTCGGCAAGGGATTGTTCGGCGCCAGCGGCGGGAAGGCGTAAGGCAAAATGTTTCTTCATTTATAGTAGGGAGTATTTTCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCTAATATCTATATAGATATTAATGAATCTAGATACATATAT
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| CDS seq | ATGGCAGTGGCACCTCCTTCGCCGCTGTCCCTCGTCTTCGTCGTCCTCGCGGCCGTCTCGCTCTCGGCCTCGGCGGCCGCCGCACCGGCGTCGGTATTGCCCAGAGGAGCCATCCCGACCAAGTCGGGCTACCTCCCCATCCCGCCGGCAAACGCTTCGCTCTACTTCGCCTTCTACGAGGCCACCGAGCCGGTGACACCGCCCGCCACCACGCCGCTTCTCGTCTGGCTGGAGGGCGGCCCCGGCTGCTCCGGCTTCCTCAGCAACTTCCTCCAGATCGGCCCTTACCTTCTCGCCGGCGGCTCACTGTCTCCCAACCCCTTCGCGTGGAACCGCCGCTTTGGTCTCCTCTTCATCGACAGCCCGCTCGGCACCGGCTTCAGCGTCGCGCCTTCCCCCGCCGCCATCCCCACCAACCAGTCCGTCGTCGCCGACCACGTCCTCGCCGCGCTCCAGTCCTTGTACTCCCTCGAGCCGAGCTTCCGTGCCCGCCCTCTGTACCTCACCGGCGAGAGCTACGCCGGCAAGACCATCCCCGCGGCCGGCGCGCTCATAGTAGCAACAAACCCGACGTTGCCGGAGAAGAAGAGGATTAACCTGCGCGGCGTGGCCATCGGCAACGGGATGACGCACCCGGTCACGCAGGTGACCACGCACGCGGACATCGCCTACTTCATGGGCCTGATCAACGGGAAGCAGAAGCGGGAGGTGGAGGCGATGCAGGCGAGGGCGGTGGAGCTGATCAAGGCGGAGAGGTGGAGCGAGGCGTACGTCGCGCGGGAGGGCCTTCTGAAGTGGATGGAGAACGCCTCCGGTGTGCCGTCGCTGTTCGACGTGGAGGTGACGACGTCGCTGGAGGCGGAGGCCGCGGCGCTCGCGCCGCTGCTGAACGGCGCCGAGGCGAAGGCGGCGCTGGGCGCGCGGGGCGACGCGGAGTGGAAGATGTGCAGCGCGGCGGTGGGCGCGGCGCAGCACAAGGACGTGATGAAGAGCGTGAAGCCGGAGGTGGAGGCGCTGCTGCGGCGTGGGACGACGCCGACGCGCGTGCTGCTGTACGGCGGGATCCGCGACGTGAAGGACGGGCCGGTGTCCACGGAGGCGTGGGTTCGGGAGCTGGAGTGGGACGGCCTCGCCGCGTTCCAGGACGCCGACCGCGCCGTGTGGCGACACCGAGGCGGCGAGCTCGCCGGGAGCGTGCAGCGCCACGGCGCGCTCGTGAACGTTGCGGTGTATGGCGCGGGGCACTTCGTGCCGTTTTCTCAAGGGCGCGCGGCGCAGGAGATGATCGAGGATTGGGTGTTCGGCAAGGGATTGTTCGGCGCCAGCGGCGGGAAGGCGTAA
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| Protein seq | MAVAPPSPLSLVFVVLAAVSLSASAAAAPASVLPRGAIPTKSGYLPIPPANASLYFAFYEATEPVTPPATTPLLVWLEGGPGCSGFLSNFLQIGPYLLAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPAAIPTNQSVVADHVLAALQSLYSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEKKRINLRGVAIGNGMTHPVTQVTTHADIAYFMGLINGKQKREVEAMQARAVELIKAERWSEAYVAREGLLKWMENASGVPSLFDVEVTTSLEAEAAALAPLLNGAEAKAALGARGDAEWKMCSAAVGAAQHKDVMKSVKPEVEALLRRGTTPTRVLLYGGIRDVKDGPVSTEAWVRELEWDGLAAFQDADRAVWRHRGGELAGSVQRHGALVNVAVYGAGHFVPFSQGRAAQEMIEDWVFGKGLFGASGGKA |
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| Function | Serine carboxypeptidase-like 50 [UniProtKB/Swiss-Prot:Q9M9Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0582500 | OsNip_05t0582500-01 | Chr05 | 28995973 | 28997546 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGTGGCACCTCCTTCGCCGCTGTCCCTCGTCTTCGTCGTCCTCGCGGCCGTCTCGCTCTCGGCCTCGGCGGCCGCCGCACCGGCGTCGGTATTGCCCAGAGGAGCCATCCCGACCAAGTCGGGCTACCTCCCCATCCCGCCGGCAAACGCTTCGCTCTACTTCGCCTTCTACGAGGCCACCGAGCCGGTGACACCGCCCGCCACCACGCCGCTTCTCGTCTGGCTGGAGGGCGGCCCCGGCTGCTCCGGCTTCCTCAGCAACTTCCTCCAGATCGGCCCTTACCTTCTCGCCGGCGGCTCACTGTCTCCCAACCCCTTCGCGTGGAACCGCCGCTTTGGTCTCCTCTTCATCGACAGCCCGCTCGGCACCGGCTTCAGCGTCGCGCCTTCCCCCGCCGCCATCCCCACCAACCAGTCCGTCGTCGCCGACCACGTCCTCGCCGCGCTCCAGTCCTTGTACTCCCTCGAGCCGAGCTTCCGTGCCCGCCCTCTGTACCTCACCGGCGAGAGCTACGCCGGCAAGACCATCCCCGCGGCCGGCGCGCTCATAGTAGCAACAAACCCGACGTTGCCGGAGAAGAAGAGGATTAACCTGCGCGGCGTGGCCATCGGCAACGGGATGACGCACCCGGTCACGCAGGTGACCACGCACGCGGACATCGCCTACTTCATGGGCCTGATCAACGGGAAGCAGAAGCGGGAGGTGGAGGCGATGCAGGCGAGGGCGGTGGAGCTGATCAAGGCGGAGAGGTGGAGCGAGGCGTACGTCGCGCGGGAGGGCCTTCTGAAGTGGATGGAGAACGCCTCCGGTGTGCCGTCGCTGTTCGACGTGGAGGTGACGACGTCGCTGGAGGCGGAGGCCGCGGCGCTCGCGCCGCTGCTGAACGGCGCCGAGGCGAAGGCGGCGCTGGGCGCGCGGGGCGACGCGGAGTGGAAGATGTGCAGCGCGGCGGTGGGCGCGGCGCAGCACAAGGACGTGATGAAGAGCGTGAAGCCGGAGGTGGAGGCGCTGCTGCGGCGTGGGACGACGCCGACGCGCGTGCTGCTGTACGGCGGGATCCGCGACGTGAAGGACGGGCCGGTGTCCACGGAGGCGTGGGTTCGGGAGCTGGAGTGGGACGGCCTCGCCGCGTTCCAGGACGCCGACCGCGCCGTGTGGCGACACCGAGGCGGCGAGCTCGCCGGGAGCGTGCAGCGCCACGGCGCGCTCGTGAACGTTGCGGTGTATGGCGCGGGGCACTTCGTGCCGTTTTCTCAAGGGCGCGCGGCGCAGGAGATGATCGAGGATTGGGTGTTCGGCAAGGGATTGTTCGGCGCCAGCGGCGGGAAGGCGTAA
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| Protein seq | MAVAPPSPLSLVFVVLAAVSLSASAAAAPASVLPRGAIPTKSGYLPIPPANASLYFAFYEATEPVTPPATTPLLVWLEGGPGCSGFLSNFLQIGPYLLAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPAAIPTNQSVVADHVLAALQSLYSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEKKRINLRGVAIGNGMTHPVTQVTTHADIAYFMGLINGKQKREVEAMQARAVELIKAERWSEAYVAREGLLKWMENASGVPSLFDVEVTTSLEAEAAALAPLLNGAEAKAALGARGDAEWKMCSAAVGAAQHKDVMKSVKPEVEALLRRGTTPTRVLLYGGIRDVKDGPVSTEAWVRELEWDGLAAFQDADRAVWRHRGGELAGSVQRHGALVNVAVYGAGHFVPFSQGRAAQEMIEDWVFGKGLFGASGGKA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.310221 | 1.374213 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0629600 | SBH | 1.769821 | 1.703348 | 0.412098 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50570 | RBH | 0.209788 | 0.924273 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0582500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028460 | RBH | 0.559346 | 1.715045 | 3.208563 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028240 | SBH | 0.242235 | 0.0 | 3.502614 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028260 | SBH | 1.811828 | 5.164622 | 3.408948 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028310 | RBH | 0.139312 | 0.106191 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028200 | SBH | 0.758387 | 6.937041 | 1.984355 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0452900 | RBH | 0.250708 | 0.8439195 | 0.1276945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027920 | SBH | 0.223134 | 0.139330 | 1.069623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466400 | RBH | 1.2728495 | 0.2876895 | 0.165483 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028030 | RBH | 0.236002 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027900 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028150 | RBH | 0.0 | 3.416802 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004240 | SBH | 0.468223 | 0.000000 | 0.905315 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028210 | RBH | 0.122319 | 0.642023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027680 | RBH | 0.000000 | 6.618670 | 3.285265 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028210 | RBH | 1.679452 | 2.351607 | 4.377370 |
