Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_05g0028240 | OGI:05078460 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr05:29474568-29484290 | ||||||||
| Gene Symbol | SCP29, OsSCP29, SCP30, OsSCP30, SCP31, OsSCP31 | ||||||||||
| DNA seq | aagcacaccggctcgatcagctgtcaacactaatcgaaacctccttgcaaaattgcaaatttgcaatacatcactcagccgataagccacgttgagcccgcgacagccgacgcgggcgcgccatggcagtggcacctccttcgccgctgtccctcgtcttcgtcgtcctcgcggccgtctcgctctcggcctcggcggccgccgcaccggcgtcggtattgcccagaggagccatcccgaccaagtcgggctacctccccatcccgccggcaaacgcttcgctctacttcgccttctacgaggccaccgagccggtgacaccgcccgccaccacgccgcttctcgtctggctggagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttctcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgctcggcaccggcttcagcgtcgcgccttcccccgccgccatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtccttgtactccctcgagccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagaagaagaggattaacctgcgcggcgtggccatcggcaacgggatgacgcacccggtcacgcaggtgaccacgcacgcggacatcgcctacttcatgggcctgatcaacgggaagcagaagcgggaggtggaggcgatgcaggcgagggcggtggagctgatcaaggcggagaggtggagcgaggcgtacgtcgcgcgggagggccttctgaagtggatggagaacgcctccggtgtgccgtcgctgttcgacgtggaggtgacgacgtcgctggaggcggaggccgcggcgctcgcgccgctgctgaacggcgccgaggcgaaggcggcgctgggcgcgcggggcgacgcggagtggaagatgtgcagcgcggcggtgggcgcggcgcagcacaaggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcggcgtgggacgacgccgacgcgcgtgctgctgtacggcgggatccgcgacgtgaaggacgggccggtgtccacggaggcgtgggttcgggagctggagtgggacggcctcgccgcgttccaggacgccgaccgcgccgtgtggcgacaccgaggcggcgagctcgccgggagcgtgcagcgccacggcgcgctcgtgaacgttgcggtgtatggcgcggggcacttcgtgccgttttctcaagggcgcgcggcgcaggagatgatcgaggattgggtgttcggcaagggattgttcggcgccagcggcgggaaggcgtaaggcaaaatgtttcttcatttatagtagggagtattttctccgtttcataatgtaagactttctagcattgctaatatctatatagatattaatgaatctagatacatatatatatatctatatttattaatatctatatgaagtaagtctagaaagtgttacattatgaaacggagagaatatgtagttagtccgctgccacggccgtacacaccgtattgtgctctgtagtttatacgtagatcatttcagcacctatgataaataaataaataaataaaattttggatcaatgcgccttgcctctttccatcgttccttggtgtagtatacatgctagatcatttcagctcacaaagttcatccccaagtccgcgcttggaactggatgccatgtaggatctcggcagcaatgtcttctcggcgtaacaaaactggttttagtagttggatgaatcgatatactcacttgaggataaattagagtcaacctacagtgggagctagtagaattacagtttttccttgtcagaatggttttgaaaaggacctaagtgccaacgaatctcaaaatccctcattgaggcccaaaaatctaatcccaaaatttctatccaaattctaacctcgaaggttgaatttcacaattcgaatttttccaccgaaattattcactaaatatatatctccttggatccaatgccaagtccatcagatttttccttccaaaatttaccaaagattgcctgatactcctatcaaataatccagtttgaatttaaaccaattccaaaataattaaatttctttcacaaactctcccatgaaaattcccaactgttactgtccaaacgggctaccctatcctcctttcttcctcccggtccgcatggactcctccctccctcccatttctctccttaatcatagaggttaataatccttataaattcaagattgacacattcatttattttttttctttatttgattagccgattcatcaaccaaatatacttttaaaaagactaggcacgtgagttctagatatagttggccaaatgggccgcccggcacggcacgacccatgcccgatcgtgcttgggccaaggttagttgggccggcacggcctgaccgacacgccgggctgtgctgtgctagcccacgagctacatacacggcccaatacgactcaagccatgccgggccagcccgaaggcacgacagcccatcgtacttctccacataataaatctattttttcatccctcaactcagcggttgtgtcgtatagctggaaataagtctattttgtattaatctactctttgggccttgccttatatggttatttaagtctattttgcatccctgtactatttttcttcaatcgtggCcgtgtcgggccagcccaccgtgccgtcgggccgagccaaaatggcgtgccttgggtcgggccacgggcctcgggccatatgaccatctatagttctagaagtctcccgattgctacaaatggattccactttccttgatgagctcctgattggtcaaatagaaatccttctatgtgatatgacactatattttttagagtaaatttcagaaaactacaactttagtgataaaactattagtttgctacaacattagcgacatatttcagtttgctgcaacaatagcatgagaaattaccacaaaactataacttttataatagcatgagtaaaagttgctgttttttaaaatttactctatttttttacaaggtacatttgatggaccttgttgttatctctggcttttaataaatgatgttgctgacttttaaaataacgtttgcaaagaagaaagatcttctttgaaccccgcatcgaatttatctccgatttgtaatgcaaacactctattcaaattttaatataaaatcagccttcgttccacagtcgagtgatatatcacatgttaatacatcttctcaatttttttcataaccatttaagtgacatataaacaacgaggggatatctcctcgagggatcaaaatagtttCcccctagacttacataagtataatacatagattttatcttagggttacagaagtacatgtacaaaattaagttctaataagtatgttataaaacaagagagaaaattgaaaattttcaaagatataaaatatatatgtcaaattaaaggtcattttaaatgtatagttattgcaggaatctagcggagattgaatatactaatcctataaaaattatgcaaagtttttatatcagtaaacaatatgtatgggtcacaaagagtatgtgttgctaatgactagtagtgattcagtttaggctcttgacatttttttttttgcggggcttgacatctgttgtttgacctgaccaaataagaaattaagaaatgctgctctcctctgaccaggaaacggagaacatatgttctgtccatatatgtatggccttctttgatctgtcacgcgcaaaacagccgcgttttggctcactagtcacttgtttgacttgctgtgggtaacgatgtcagcttggaacaaatactcaattgactacttgatgataatgtactttagcttcaaacatttgtatttccttacatatatcacatcaggtacacttccaagaacttgcacctgagaaaattctcagctattacacgacaatacacgcttcggagaatttccgacaatacacatactcctacttaaggctttgtgtgtgtgacagtgccattctcaagcacaactgaactgcccataggtacaaatcattccatccagccatggcacctccttcccggccgttttacctcgtgtacgtcgtaatatttgtggccgtctcactctcggccacggctgccactgccaccgcggcggcggtattgcccagaggagccctgccgaccaagtcgggctacctccccatcccaccggcggcgaacgcttcgctctacttcgccttctacgaggcaaccgagccggtgacaccgctggccacgacgccgcttctcgtctggctagagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttttcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgcttggcaccggcttcagcgtcgcgccttcccccgccaacatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtcgtttctctctctcgaaccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagcagaagaggattaacctgcgcggcgtggccatcggcaacggcatgacgcaccccgtcgcggaggtgacgacgcacgcggacatcgcctacttcatgggcctgatcaacgcgaagcagaagcgcgcggccgaggcgatgcaggcggaggcagtggcgctgacgagggaggagaggtggcgcgaggcgtccgccgcgcgtgcgcggctgatgtcgtggctggagaacgccacgggcgtcgtgacgctgctcgacgtggaagttcagcagtcggtggcggtgatggccgcggggctcgcggacttcctcagcaccgccgaggtgaaggcggcggtgggcgcccgccccgacgtcgcgtgggaggcgtgctccgcggcggtgggcgcggcgcaggaggaggacgtgatgaagagcgcgaagcgtgacgtggaggcgctgctgcaccgcggggcgtcgccgacggcgacgccgacgccgacccgcgtgctgctgtacgaggggatccgcgacgtggggaacgggccggtgtgcgcggaggcgtggctgcgggagctggagtgggacggcctcgccgcgttccaggacgccggccgcgccgtgtggcgaagcggaggcgggctcgccgggtacgtgcagcgccatgacgcgctcgtgcatgtggccgtgtatggtgccgggcacttcgtgccgtattctcaggggcgcgtggcgcaggagatgatcgaggattgggtgttcagaaagggattattcagcgcgggcaccgtctagaacctgaacatcatttcaaggcatatataagtaaataaataaataataaaggggctagctatatttgtggaattagatttgaaaatatactttttatttattttttcacgaatattccggatgcaaaatttttgacgaaaatatatcgtcgatctcgtacaaccattatacgaaaattacgtaagcgagatgtcgcagacggtatcacgccaggaaagtgcgagaccgcgcgggcgaaagtcgttgaaacaatcagcgacagtgtcaaccggctccatttatttggtgattaagtacataattactattaactaataataattagtgattaattaataattaattaatcgctaattaggatagttaatcactaattgattcggtggcagtcaggtatcgaaaaaattttgaaaatatccgttttttattaataatttgcgtttatatacatgcatgcggtgaatttgcgaaaatataactaacacgcgacgccggatgcgggagcgacgggcaagcgcaggttggatgtgcgggaccggaggctcgagcggtcgcgcagggtggggtagacagcgtcggttccgcggcttagacaaacggaaccggcgcgctcccgcggaacaggagagggccacgcggtaccggctcggttccttagagccgaagcgcggcaccggctcggtcccgctggatggttgcgcggcaccggccggcccaatcccttggagcagcggtgccgcatctccgtgacgcgggaccgctggcgacgccctcccccagcaccctgtccaccattggccattggatacagctgaagcatgcaagagattcttttatatgtggttagtgccggaggatttgctattcttttgattgattagtgcttgaagcatgcaatagattcagtacgtggttagtgccgggagttgattgattagggcttgaagcatgctcagtacgtggttagtgccgggaggatttgcTttttttttttattgatcagtgctctgacgagccgttcccgcgcctcgaccatgcggcgtcgccagcggtcccgcgcggcggagatgcggcaccgctgctccacgggattgggccggtaccgcgcaacagccctgcgggaccgagccggtgccgccgccctgccctgcgtgaccgctcgggccttcgtcccgctctgaccaacctgcgcttgcccgtcgctcccacatgccggcatcgcgggttaggtatattttcgcaaattcatctcatgtatgtatataaacgtaaattattaataaaaaaaaggatattttcaaTttttattcgtcaggtatcggcgtatcgctgtttcaatgtcggtctcgctcttccgttccggccgcgaaggcttctcgggccctcagtgtgagcagtagagagagtgagaatgcaccatcggatatctcgcagcgatccaaaatctgatgggccgaaatgggttgttaccatcggctgccgcccaaaatccacgggaccgtacgctgacgatggatcacttcagcagaggaccgacgaggcgacgaggtgacggccgtgctgggcacccgtggcgacgtcgcgcggtactgatcctgcacgccagcacacatccggcaatccggcaggcggcagctttggaaggtaaagaattgacgagagcaatcaatggcaacgagtgatggattcatcaagtgacgcaaggcccagtggcagagggttggtgaggggctttatttggtttgatttatgcccttgaacggaccaaaccagcgaccaaaaaaatgcagcagttctttttaaaactaaaaattgcagcagttggcaaagaatatatcatccccgcttcagtttatcgcggagacggacgagcagatcataattcagatgtcattttcttgttgtaatcaccgcttacaccacaaccacaccccggccatgacgtgtcactttccaaagtcatctctcgtcaatgacaaacaggcaggcacagagtcacagacacaccgcacagtacAaaacacagtgagacacaaacatcttgtcgtactatctctattcctcgtcccaaaatataaacatttttaatataagatatatttagctcacgctaaaattaaacgtttggttgaaattgaaacgatgttatgaaaaatttgtaaatttatgtgtgtataaaagttttgatgtgatagaaaagttgaaagtttaaagaaaaattttaaaactaaactcggccatagtaccaaattaaatatttgtaactttgactattaataaaaaaaattgaaaagaaataatcatataaaattgttattactagatttattattaaacaaactaatatgtaactctttttatttaaaactagatattgttgaacaaaatagcatttcggaaaccgcttagaagtaaagtgcttatattttttatattttactaggacagagaggaatatctgattattaccggcatgagctgagctgattgatcggtgcattcactgccatttcaacgccacaaaccacagactgacaagctcatcctgttcccatctcaactgcggtcactcaccaatggctccgccgcttctcctcgtctcgctcctgctcatcggcttcgtcagcgccagagccatcacaccctcagctgaagcggcggcggtgttcccgaaggaagccctgccgaccaactccggctacctccccatcacgacaaccaacgcctcgctcttcttcgcctactacgaggccacgcacccgctcacgccgccggcctccacgccgctcctcctctggctccagggcggccccggctgctccggcctcgccggcaatttcttcgagctcggcccctacttcgtcaaccgcgacgcgctctccctctcgcccaaccccttctcgtggaatcgccggtttggtctcctcttcatcgacaacccgctcggcacgggcttcagcgccgcgccgtcccccgccgccatccccaccaaccagtccgtcgtcgccgcgcacctcttcgccgcgctgcagtcgttcttcgcgctccagccgggctcccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatatcccggcggctgggtcgtacatcctggccgtgaaccccacgctgccgacgcggctgcgggttaacctccacggcgtggccatcggcaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaagcgggagctggaggcgctgcaggcgagggcggtggagctgacgaacgcggcgaggtggagcgaggcggccgacgcgagggggctcgtgctgtcgtggctggagaacgcgacgggcctggcgacgctgttcgacgcggcgaagaagcgcccctacgagacgggccccgtggggaagttcgtgaaccgggcggaggtgaaggcggcgctgggcgcgcgcggcgacgtggagtgggaggagtgcagcgacgcggtgggcgcggCGATGCAcggggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcGgggaacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtatcgacggaggcgtggatgcgggagctggagtgggacggcctgcccgccttcctcgacgccgaccgcgccgtgtggcgcatcggcgaggagctcgccgggtacgtgcagcgctccggcccgctctcccacgtcgtcgtctacggcgccgggcacctcatgccggcggacaacggccgcgcggcgcaggagatgatcgaggattgggtgttgcaggcggggctattcgggcgccacggcgggatgaagcgcgcggcctgactccgcactccgggcgccggcggaggccaacctgtggcctcatctcttgcggtgtcaaactctaatctgattttagaatcgagcagagtacatcgaggaatacaagcatttgagtctataattttttcttctggtgtggttgaattcatcgtgataaactatcctgatttcattgggatta
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| CDS seq | atggcagtggcacctccttcgccgctgtccctcgtcttcgtcgtcctcgcggccgtctcgctctcggcctcggcggccgccgcaccggcgtcggtattgcccagaggagccatcccgaccaagtcgggctacctccccatcccgccggcaaacgcttcgctctacttcgccttctacgaggccaccgagccggtgacaccgcccgccaccacgccgcttctcgtctggctggagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttctcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgctcggcaccggcttcagcgtcgcgccttcccccgccgccatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtccttgtactccctcgagccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagaagaagaggattaacctgcgcggcgtggccatcggcaacgggatgacgcacccggtcacgcaggtgaccacgcacgcggacatcgcctacttcatgggcctgatcaacgggaagcagaagcgggaggtggaggcgatgcaggcgagggcggtggagctgatcaaggcggagaggtggagcgaggcgtacgtcgcgcgggagggccttctgaagtggatggagaacgcctccggtgtgccgtcgctgttcgacgtggaggtgacgacgtcgctggaggcggaggccgcggcgctcgcgccgctgctgaacggcgccgaggcgaaggcggcgctgggcgcgcggggcgacgcggagtggaagatgtgcagcgcggcggtgggcgcggcgcagcacaaggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcggcgtgggacgacgccgacgcgcgtgctgctgtacggcgggatccgcgacgtgaaggacgggccggtgtccacggaggcgtgggttcgggagctggagtgggacggcctcgccgcgttccaggacgccgaccgcgccgtgtggcgacaccgaggcggcgagctcgccgggagcgtgcagcgccacggcgcgctcgtgaacgttgcggtgtatggcgcggggcacttcgtgccccatggcacctccttcccggccgttttacctcgttcgggctacctccccatcccaccggcggcgaacgcttcgctctacttcgccttctacgaggcaaccgagccggtgacaccgctggccacgacgccgcttctcgtctggctagagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttttcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgcttggcaccggcttcagcgtcgcgccttcccccgccaacatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtcgtttctctctctcgaaccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagcagaagaggattaacctgcgcggcgtggccatcggcaacggcatgacgcaccccgtcgcggaggtgacgacgcacgcggacatcgcctacttcatgggcctgatcaacgcgaagcagaagcgcgcggccgaggcgatgcaggcggaggcagtggcgctgacgagggaggagaggtggcgcgaggcgtccgccgcgcgtgcgcggctgatgtcgtggctggagaacgccacgggcgtcgtgacgctgctcgacgtggaagttcagcagtcggtggcggtgatggccgcggggctcgcggacttcctcagcaccgccgaggtgaaggcggcggtgggcgcccgccccgacgtcgcgtgggaggcgtgctccgcggcggtgggcgcggcgcaggaggaggacgtgatgaagagcgcgaagcgtgacgtggaggcgctgctgcaccgcggggcgtcgccgacggcgacgccgacgccgacccgcgtgctgctgtacgaggggatccgcgacgtggggaacgggccggtgtgcgcggaggcgtggctgcgggagctggagtgggacggcctcgccgcgttccaggacgccggccgcgccgtgtggcgaagcggaggcgggctcgccgggtacgtgcagcgccatgacgcgctcgtgcatgtggccgtgtatggtgccgggcacttcgtgccgtattctcaggggcgcgtggcgcaggagatgatcgaggattgggtgttcagaaagggattattcagcgcgggcaccctcggcccctacttcgtcaaccgcgacgcgctctccctctcgcccaaccccttctcgtggaatcgccggtttggtctcctcttcatcgacaacccgctcggcacgggcttcagcgccgcgccgtcccccgccgccatccccaccaaccagtccgtcgtcgccgcgcacctcttcgccgcgctgcagtcgttcttcgcgctccagccgggctcccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatatcccggcggctgggtcgtacatcctggccgtgaaccccacgctgccgacgcggctgcgggttaacctccacggcgtggccatcggcaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaagcgggagctggaggcgctgcaggcgagggcggtggagctgacgaacgcggcgaggtggagcgaggcggccgacgcgagggggctcgtgctgtcgtggctggagaacgcgacgggcctggcgacgctgttcgacgcggcgaagaagcgcccctacgagacgggccccgtggggaagttcgtgaaccgggcggaggtgaaggcggcgctgggcgcgcgcggcgacgtggagtgggaggagtgcagcgacgcggtgggcgcggCGATGCAcggggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcGgggaacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtatcgacggaggcgtggatgcgggagctggagtgggacggcctgcccgccttcctcgacgccgaccgcgccgtgtggcgcatcggcgaggagctcgccgggtacgtgcagcgctccggcccgctctcccacgtcgtcgtctacggcgccgggcacctcatgccggcggacaacggccgcgcggcgcaggagatgatcgaggattgggtgttgcaggcggggctattcgggcgccacggcgggatgaagcgcgcggcctga
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| Protein seq | MAVAPPSPLSLVFVVLAAVSLSASAAAAPASVLPRGAIPTKSGYLPIPPANASLYFAFYEATEPVTPPATTPLLVWLEGGPGCSGFLSNFLQIGPYLLAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPAAIPTNQSVVADHVLAALQSLYSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEKKRINLRGVAIGNGMTHPVTQVTTHADIAYFMGLINGKQKREVEAMQARAVELIKAERWSEAYVAREGLLKWMENASGVPSLFDVEVTTSLEAEAAALAPLLNGAEAKAALGARGDAEWKMCSAAVGAAQHKDVMKSVKPEVEALLRRGTTPTRVLLYGGIRDVKDGPVSTEAWVRELEWDGLAAFQDADRAVWRHRGGELAGSVQRHGALVNVAVYGAGHFVPHGTSFPAVLPRSGYLPIPPAANASLYFAFYEATEPVTPLATTPLLVWLEGGPGCSGFLSNFLQIGPYLFAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPANIPTNQSVVADHVLAALQSFLSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEQKRINLRGVAIGNGMTHPVAEVTTHADIAYFMGLINAKQKRAAEAMQAEAVALTREERWREASAARARLMSWLENATGVVTLLDVEVQQSVAVMAAGLADFLSTAEVKAAVGARPDVAWEACSAAVGAAQEEDVMKSAKRDVEALLHRGASPTATPTPTRVLLYEGIRDVGNGPVCAEAWLRELEWDGLAAFQDAGRAVWRSGGGLAGYVQRHDALVHVAVYGAGHFVPYSQGRVAQEMIEDWVFRKGLFSAGTLGPYFVNRDALSLSPNPFSWNRRFGLLFIDNPLGTGFSAAPSPAAIPTNQSVVAAHLFAALQSFFALQPGSRSRPFFLTGESYAGKYIPAAGSYILAVNPTLPTRLRVNLHGVAIGNGLTHPVAQVATHADTAYFMGLINAKQKRELEALQARAVELTNAARWSEAADARGLVLSWLENATGLATLFDAAKKRPYETGPVGKFVNRAEVKAALGARGDVEWEECSDAVGAAMHGDVMKSVKPEVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELEWDGLPAFLDADRAVWRIGEELAGYVQRSGPLSHVVVYGAGHLMPADNGRAAQEMIEDWVLQAGLFGRHGGMKRAA |
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| Function | Serine carboxypeptidase-like 50 [UniProtKB/Swiss-Prot:Q9M9Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0028240 | OsKeNa_05g0028240.01 | Chr05 | 29474568 | 29484109 | + | NAM | ||
| CDS seq | atggcagtggcacctccttcgccgctgtccctcgtcttcgtcgtcctcgcggccgtctcgctctcggcctcggcggccgccgcaccggcgtcggtattgcccagaggagccatcccgaccaagtcgggctacctccccatcccgccggcaaacgcttcgctctacttcgccttctacgaggccaccgagccggtgacaccgcccgccaccacgccgcttctcgtctggctggagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttctcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgctcggcaccggcttcagcgtcgcgccttcccccgccgccatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtccttgtactccctcgagccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagaagaagaggattaacctgcgcggcgtggccatcggcaacgggatgacgcacccggtcacgcaggtgaccacgcacgcggacatcgcctacttcatgggcctgatcaacgggaagcagaagcgggaggtggaggcgatgcaggcgagggcggtggagctgatcaaggcggagaggtggagcgaggcgtacgtcgcgcgggagggccttctgaagtggatggagaacgcctccggtgtgccgtcgctgttcgacgtggaggtgacgacgtcgctggaggcggaggccgcggcgctcgcgccgctgctgaacggcgccgaggcgaaggcggcgctgggcgcgcggggcgacgcggagtggaagatgtgcagcgcggcggtgggcgcggcgcagcacaaggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcggcgtgggacgacgccgacgcgcgtgctgctgtacggcgggatccgcgacgtgaaggacgggccggtgtccacggaggcgtgggttcgggagctggagtgggacggcctcgccgcgttccaggacgccgaccgcgccgtgtggcgacaccgaggcggcgagctcgccgggagcgtgcagcgccacggcgcgctcgtgaacgttgcggtgtatggcgcggggcacttcgtgccccatggcacctccttcccggccgttttacctcgttcgggctacctccccatcccaccggcggcgaacgcttcgctctacttcgccttctacgaggcaaccgagccggtgacaccgctggccacgacgccgcttctcgtctggctagagggcggccccggctgctccggcttcctcagcaacttcctccagatcggcccttaccttttcgccggcggctcactgtctcccaaccccttcgcgtggaaccgccgctttggtctcctcttcatcgacagcccgcttggcaccggcttcagcgtcgcgccttcccccgccaacatccccaccaaccagtccgtcgtcgccgaccacgtcctcgccgcgctccagtcgtttctctctctcgaaccgagcttccgtgcccgccctctgtacctcaccggcgagagctacgccggcaagaccatccccgcggccggcgcgctcatagtagcaacaaacccgacgttgccggagcagaagaggattaacctgcgcggcgtggccatcggcaacggcatgacgcaccccgtcgcggaggtgacgacgcacgcggacatcgcctacttcatgggcctgatcaacgcgaagcagaagcgcgcggccgaggcgatgcaggcggaggcagtggcgctgacgagggaggagaggtggcgcgaggcgtccgccgcgcgtgcgcggctgatgtcgtggctggagaacgccacgggcgtcgtgacgctgctcgacgtggaagttcagcagtcggtggcggtgatggccgcggggctcgcggacttcctcagcaccgccgaggtgaaggcggcggtgggcgcccgccccgacgtcgcgtgggaggcgtgctccgcggcggtgggcgcggcgcaggaggaggacgtgatgaagagcgcgaagcgtgacgtggaggcgctgctgcaccgcggggcgtcgccgacggcgacgccgacgccgacccgcgtgctgctgtacgaggggatccgcgacgtggggaacgggccggtgtgcgcggaggcgtggctgcgggagctggagtgggacggcctcgccgcgttccaggacgccggccgcgccgtgtggcgaagcggaggcgggctcgccgggtacgtgcagcgccatgacgcgctcgtgcatgtggccgtgtatggtgccgggcacttcgtgccgtattctcaggggcgcgtggcgcaggagatgatcgaggattgggtgttcagaaagggattattcagcgcgggcaccctcggcccctacttcgtcaaccgcgacgcgctctccctctcgcccaaccccttctcgtggaatcgccggtttggtctcctcttcatcgacaacccgctcggcacgggcttcagcgccgcgccgtcccccgccgccatccccaccaaccagtccgtcgtcgccgcgcacctcttcgccgcgctgcagtcgttcttcgcgctccagccgggctcccgctcccgccccttcttcctcaccggcgagagctacgccggcaagtatatcccggcggctgggtcgtacatcctggccgtgaaccccacgctgccgacgcggctgcgggttaacctccacggcgtggccatcggcaacgggctgacgcaccccgtcgcgcaggtggcgacgcacgcggacaccgcctacttcatgggcctgatcaacgccaagcagaagcgggagctggaggcgctgcaggcgagggcggtggagctgacgaacgcggcgaggtggagcgaggcggccgacgcgagggggctcgtgctgtcgtggctggagaacgcgacgggcctggcgacgctgttcgacgcggcgaagaagcgcccctacgagacgggccccgtggggaagttcgtgaaccgggcggaggtgaaggcggcgctgggcgcgcgcggcgacgtggagtgggaggagtgcagcgacgcggtgggcgcggCGATGCAcggggacgtgatgaagagcgtgaagccggaggtggaggcgctgctgcGgggaacgcgcgtgctgctgtaccagggcatccgcgacctcagggacggcgtggtatcgacggaggcgtggatgcgggagctggagtgggacggcctgcccgccttcctcgacgccgaccgcgccgtgtggcgcatcggcgaggagctcgccgggtacgtgcagcgctccggcccgctctcccacgtcgtcgtctacggcgccgggcacctcatgccggcggacaacggccgcgcggcgcaggagatgatcgaggattgggtgttgcaggcggggctattcgggcgccacggcgggatgaagcgcgcggcctga
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| Protein seq | MAVAPPSPLSLVFVVLAAVSLSASAAAAPASVLPRGAIPTKSGYLPIPPANASLYFAFYEATEPVTPPATTPLLVWLEGGPGCSGFLSNFLQIGPYLLAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPAAIPTNQSVVADHVLAALQSLYSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEKKRINLRGVAIGNGMTHPVTQVTTHADIAYFMGLINGKQKREVEAMQARAVELIKAERWSEAYVAREGLLKWMENASGVPSLFDVEVTTSLEAEAAALAPLLNGAEAKAALGARGDAEWKMCSAAVGAAQHKDVMKSVKPEVEALLRRGTTPTRVLLYGGIRDVKDGPVSTEAWVRELEWDGLAAFQDADRAVWRHRGGELAGSVQRHGALVNVAVYGAGHFVPHGTSFPAVLPRSGYLPIPPAANASLYFAFYEATEPVTPLATTPLLVWLEGGPGCSGFLSNFLQIGPYLFAGGSLSPNPFAWNRRFGLLFIDSPLGTGFSVAPSPANIPTNQSVVADHVLAALQSFLSLEPSFRARPLYLTGESYAGKTIPAAGALIVATNPTLPEQKRINLRGVAIGNGMTHPVAEVTTHADIAYFMGLINAKQKRAAEAMQAEAVALTREERWREASAARARLMSWLENATGVVTLLDVEVQQSVAVMAAGLADFLSTAEVKAAVGARPDVAWEACSAAVGAAQEEDVMKSAKRDVEALLHRGASPTATPTPTRVLLYEGIRDVGNGPVCAEAWLRELEWDGLAAFQDAGRAVWRSGGGLAGYVQRHDALVHVAVYGAGHFVPYSQGRVAQEMIEDWVFRKGLFSAGTLGPYFVNRDALSLSPNPFSWNRRFGLLFIDNPLGTGFSAAPSPAAIPTNQSVVAAHLFAALQSFFALQPGSRSRPFFLTGESYAGKYIPAAGSYILAVNPTLPTRLRVNLHGVAIGNGLTHPVAQVATHADTAYFMGLINAKQKRELEALQARAVELTNAARWSEAADARGLVLSWLENATGLATLFDAAKKRPYETGPVGKFVNRAEVKAALGARGDVEWEECSDAVGAAMHGDVMKSVKPEVEALLRGTRVLLYQGIRDLRDGVVSTEAWMRELEWDGLPAFLDADRAVWRIGEELAGYVQRSGPLSHVVVYGAGHLMPADNGRAAQEMIEDWVLQAGLFGRHGGMKRAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_05g0028240 | OsKeNa_05g0028240.02 | Chr05 | 29482700 | 29484290 | + | IsoSeq | ||
| CDS seq | cattcactgccatttcaacgccacaaaccacagactgacaagctcatcctgttcccatctcaactgcggtcactcaccaatggctccgccgcttctcctcgtctcgctcctgctcatcggcttcgtcagcgccagagccatcacaccctc |
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| Protein seq | HSLPFQRHKPQTDKLILFPSQLRSLTNGSAASPRLAPAHRLRQRQSHHTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.242235 | 0.0 | 3.502614 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0582600 | RBH | 0.096147 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50570 | RBH | 0.209788 | 0.924273 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0582800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028460 | RBH | 0.559346 | 1.715045 | 3.208563 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025720 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028260 | RBH | 1.811828 | 5.164622 | 3.408948 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028310 | RBH | 0.139312 | 0.106191 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028200 | RBH | 0.758387 | 6.937041 | 1.984355 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0452900 | RBH | 0.250708 | 0.8439195 | 0.1276945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027920 | RBH | 0.223134 | 0.139330 | 1.069623 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466600 | RBH | 8.37977 | 2.381943 | 5.5735025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028030 | RBH | 0.236002 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027910 | RBH | 0.158476 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028150 | RBH | 0.0 | 3.416802 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007940 | SBH | 0.087193 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028210 | RBH | 0.122319 | 0.642023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027700 | RBH | 0.272999 | 0.516808 | 0.617870 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028210 | RBH | 1.679452 | 2.351607 | 4.377370 |
