Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0574000 | OGI:05077360 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:28597540-28599077 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAATTGTGTGGCTGTGACCTAGCTAGTCGATCGGTCATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCAGCTGCCGGGCCACTCCGCGGCGTACCGCGTCGCCAGGTTCGTGTACGCGACGTCGTGCGTCGCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAACTGGATCGGGTACGTCGCGGTGGCCACCGACGAAGGGAAGGCTGCGCTCGGGCGCCGCGACATCGTCGTCGCGTGGCGCGGCACGGTGCAGTCGCTGGAGTGGATCAAGGACATGGACTTCGTCATGGTGCCACCCAAGGGCCTCCTCCGGGACAAAGCTTCCGACGCCATGGTGCATCGAGGGTGGCTGTCCATGTACACCTCCAGGGACTCTGAGTCCAGCCACAACAAGGACAGTGCTCGAGATCAGGTAGTAATGGCCGGAGTAGCACGGCAAGGTCACCTACCACATTGTCACTGATCGACATGGATGTTGCCATGCAGGTGTTGAGCGAGGTGGCGAAGCTGGTGAGCATGTACCAGGACGAGGAACTGAGCATCACGGTGACGGGACACAGCCTCGGCGCCGCACTCGCGACGCTGAACGCGTTCGACATCGTCGAGAACGGGTACAACAGGGCACCCCGCGCCGCGGCAGCGGCGGCGGGCTGCCCGGTCACCGCGTTCGTGTTCGCCAGCCCGCGCGTCGGCGGGCACGGCTTCAAGCGCCGCTTCGACGGCGCGCGTGGCCTCGGCCTCCGCCTCCTCCGCGTCCGCAACGCGCGCGACGTCGTCCCCAGGTACCCGCCGGCGCCGCCGTACCACGGCGTGGGCACAGAGCTGGCGATCGACACGGGCGAGTCGCCGTACCTGAGGAGGCCCGGGAACGAGCTGGTGTGGCACAACCTCGAGTGCTACCTGCACGGCGTGGCCGGCGCGCGCGGCGGCGAGGCCGGGCGGTTCAAGCTCGCCGTGGAGCGCGACGTGGCGCTGGCGAACAAGTCCTACGGCGCGCTGCGCGACGAGCACGCCGTGCCGGCCGGGTGGTGGATCCCGTCGAACAGGGGCATGGTGAGAGGCGCCGATGGCCGCTGGACTCTGATGGACCGCGAGGAAGATGAGGATAGTGCAGAGTAAATGATTGGATGGAGTGTATCAATGTGCATGAGCATGAACTCGCATATGCATCAAGAAATAATTACTGGACATCTCAACGTGTCCAAATCAATACCTTTGTATCTGTAACAATGTCCAAATCAACACATGCATTTGACTGGACAGAGTTTTATTTACAAATGAATTATGTGATATGAGGGGGAAATCCCATTT
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| CDS seq | ATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCAGCTGCCGGGCCACTCCGCGGCGTACCGCGTCGCCAGGTTCGTGTACGCGACGTCGTGCGTCGCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAACTGGATCGGGTACGTCGCGGTGGCCACCGACGAAGGGAAGGCTGCGCTCGGGCGCCGCGACATCGTCGTCGCGTGGCGCGGCACGGTGCAGTCGCTGGAGTGGATCAAGGACATGGACTTCGTCATGGTGCCACCCAAGGGCCTCCTCCGGGACAAAGCTTCCGACGCCATGGTGCATCGAGGGTGGCTGTCCATGTACACCTCCAGGGACTCTGAGTCCAGCCACAACAAGGACAGTGCTCGAGATCAGGTGTTGAGCGAGGTGGCGAAGCTGGTGAGCATGTACCAGGACGAGGAACTGAGCATCACGGTGACGGGACACAGCCTCGGCGCCGCACTCGCGACGCTGAACGCGTTCGACATCGTCGAGAACGGGTACAACAGGGCACCCCGCGCCGCGGCAGCGGCGGCGGGCTGCCCGGTCACCGCGTTCGTGTTCGCCAGCCCGCGCGTCGGCGGGCACGGCTTCAAGCGCCGCTTCGACGGCGCGCGTGGCCTCGGCCTCCGCCTCCTCCGCGTCCGCAACGCGCGCGACGTCGTCCCCAGGTACCCGCCGGCGCCGCCGTACCACGGCGTGGGCACAGAGCTGGCGATCGACACGGGCGAGTCGCCGTACCTGAGGAGGCCCGGGAACGAGCTGGTGTGGCACAACCTCGAGTGCTACCTGCACGGCGTGGCCGGCGCGCGCGGCGGCGAGGCCGGGCGGTTCAAGCTCGCCGTGGAGCGCGACGTGGCGCTGGCGAACAAGTCCTACGGCGCGCTGCGCGACGAGCACGCCGTGCCGGCCGGGTGGTGGATCCCGTCGAACAGGGGCATGGTGAGAGGCGCCGATGGCCGCTGGACTCTGATGGACCGCGAGGAAGATGAGGATAGTGCAGAGTAA
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| Protein seq | MSSQQWLGDGTARRWRELHGESDWDGLLDPFDLDLRRTVIRYGEMAQATYDAFNHEKLSPHAGLSRFAARRFFERAQLPGHSAAYRVARFVYATSCVAVPEPLILRSASRARRCRESNWIGYVAVATDEGKAALGRRDIVVAWRGTVQSLEWIKDMDFVMVPPKGLLRDKASDAMVHRGWLSMYTSRDSESSHNKDSARDQVLSEVAKLVSMYQDEELSITVTGHSLGAALATLNAFDIVENGYNRAPRAAAAAAGCPVTAFVFASPRVGGHGFKRRFDGARGLGLRLLRVRNARDVVPRYPPAPPYHGVGTELAIDTGESPYLRRPGNELVWHNLECYLHGVAGARGGEAGRFKLAVERDVALANKSYGALRDEHAVPAGWWIPSNRGMVRGADGRWTLMDREEDEDSAE |
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| Function | Phospholipase A1-II 6 [UniProtKB/Swiss-Prot:Q6F358] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0574000 | OsNip_05t0574000-00 | Chr05 | 28597575 | 28598915 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGTCGCAGCAATGGCTTGGTGACGGCACGGCGCGGAGGTGGAGGGAGCTCCATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCAGCTGCCGGGCCACTCCGCGGCGTACCGCGTCGCCAGGTTCGTGTACGCGACGTCGTGCGTCGCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAACTGGATCGGGTACGTCGCGGTGGCCACCGACGAAGGGAAGGCTGCGCTCGGGCGCCGCGACATCGTCGTCGCGTGGCGCGGCACGGTGCAGTCGCTGGAGTGGATCAAGGACATGGACTTCGTCATGGTGCCACCCAAGGGCCTCCTCCGGGACAAAGCTTCCGACGCCATGGTGCATCGAGGGTGGCTGTCCATGTACACCTCCAGGGACTCTGAGTCCAGCCACAACAAGGACAGTGCTCGAGATCAGGTGTTGAGCGAGGTGGCGAAGCTGGTGAGCATGTACCAGGACGAGGAACTGAGCATCACGGTGACGGGACACAGCCTCGGCGCCGCACTCGCGACGCTGAACGCGTTCGACATCGTCGAGAACGGGTACAACAGGGCACCCCGCGCCGCGGCAGCGGCGGCGGGCTGCCCGGTCACCGCGTTCGTGTTCGCCAGCCCGCGCGTCGGCGGGCACGGCTTCAAGCGCCGCTTCGACGGCGCGCGTGGCCTCGGCCTCCGCCTCCTCCGCGTCCGCAACGCGCGCGACGTCGTCCCCAGGTACCCGCCGGCGCCGCCGTACCACGGCGTGGGCACAGAGCTGGCGATCGACACGGGCGAGTCGCCGTACCTGAGGAGGCCCGGGAACGAGCTGGTGTGGCACAACCTCGAGTGCTACCTGCACGGCGTGGCCGGCGCGCGCGGCGGCGAGGCCGGGCGGTTCAAGCTCGCCGTGGAGCGCGACGTGGCGCTGGCGAACAAGTCCTACGGCGCGCTGCGCGACGAGCACGCCGTGCCGGCCGGGTGGTGGATCCCGTCGAACAGGGGCATGGTGAGAGGCGCCGATGGCCGCTGGACTCTGATGGACCGCGAGGAAGATGAGGATAGTGCAGAGTAA
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| Protein seq | MSSQQWLGDGTARRWRELHGESDWDGLLDPFDLDLRRTVIRYGEMAQATYDAFNHEKLSPHAGLSRFAARRFFERAQLPGHSAAYRVARFVYATSCVAVPEPLILRSASRARRCRESNWIGYVAVATDEGKAALGRRDIVVAWRGTVQSLEWIKDMDFVMVPPKGLLRDKASDAMVHRGWLSMYTSRDSESSHNKDSARDQVLSEVAKLVSMYQDEELSITVTGHSLGAALATLNAFDIVENGYNRAPRAAAAAAGCPVTAFVFASPRVGGHGFKRRFDGARGLGLRLLRVRNARDVVPRYPPAPPYHGVGTELAIDTGESPYLRRPGNELVWHNLECYLHGVAGARGGEAGRFKLAVERDVALANKSYGALRDEHAVPAGWWIPSNRGMVRGADGRWTLMDREEDEDSAE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0574000 | OsNip_05t0574000-01 | Chr05 | 28597540 | 28599077 | + | IsoSeq | ||
| CDS seq | ATGGTGAGAGCGACTGGGACGGCCTCCTGGACCCGTTCGACCTCGACCTCCGCCGCACCGTCATCCGCTACGGCGAGATGGCGCAGGCGACGTACGACGCCTTCAACCACGAGAAGCTCTCGCCGCACGCGGGCCTCTCGAGGTTCGCCGCGCGCCGCTTCTTCGAGCGGGCGCAGCTGCCGGGCCACTCCGCGGCGTACCGCGTCGCCAGGTTCGTGTACGCGACGTCGTGCGTCGCCGTGCCGGAGCCGCTCATCCTCCGGTCCGCGTCGCGCGCGCGCAGGTGCAGGGAGAGCAACTGGATCGGGTACGTCGCGGTGGCCACCGACGAAGGGAAGGCTGCGCTCGGGCGCCGCGACATCGTCGTCGCGTGGCGCGGCACGGTGCAGTCGCTGGAGTGGATCAAGGACATGGACTTCGTCATGGTGCCACCCAAGGGCCTCCTCCGGGACAAAGCTTCCGACGCCATGGTGCATCGAGGGTGGCTGTCCATGTACACCTCCAGGGACTCTGAGTCCAGCCACAACAAGGACAGTGCTCGAGATC
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| Protein seq | MVRATGTASWTRSTSTSAAPSSATARWRRRRTTPSTTRSSRRTRASRGSPRAASSSGRSCRATPRRTASPGSCTRRRASPCRSRSSSGPRRARAGAGRATGSGTSRWPPTKGRLRSGAATSSSRGAARCSRWSGSRTWTSSWCHPRASSGTKLPTPWCIEGGCPCTPPGTLSPATTRTVLEI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 21.386841 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0651800 | RBH | 0.0 | 0.0 | 1.514509 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49830 | RBH | 0.0 | 0.0 | 4.082284 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0574000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027820 | RBH | 0.0 | 0.000000 | 8.436032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027610 | RBH | 0.0 | 0.000000 | 5.496304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027640 | RBH | 0.0 | 0.000000 | 10.215470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027680 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027590 | RBH | 0.0 | 0.000000 | 17.385935 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0446200 | RBH | 0.040086 | 0.2317505 | 0.114894 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027280 | RBH | 0.000000 | 0.000000 | 2.178415 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0458900 | RBH | 0 | 0 | 0.3205415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027550 | RBH | 0.0 | 0.000000 | 2.921822 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027090 | RBH | 0.0 | 0.000000 | 2.575443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027550 | RBH | 0.0 | 0.000000 | 14.666939 |
