Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0651800 | OGI:01080810 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:26321416-26324769 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAGGCCGGTCTTTCCCTGCACGTTCAGGCAGTGTGGGATCCATAGTAACTTGTACCCATCCATCCCGTGAGGCCGTGATCCAGCTCTTGTTTCTCCTTTCTTTCAGTTGCATGTACACAAAGTTGCACAAATGTGTTGCTTTCTGCTGGTCTCTGTACTGCTAGCCACCACTCTCACCGACGTAGCCAGTGCACAGAGATGGAGGCAGACGAGCGGCGGCGGCAAGGACAGGTGGGACGGCCTCCTCGACCCACTCGACGCCGACCTCCGGCGCGACATCATCCGCTACGGCGAGCTGGCGCAGGCGACGTCGGACGCGCTCATCGGCGACCCGGCGTCGCCGTTCGCCGGCGCGTCGCGGTACGCGCCCGACGCGTTCCTCCGCAAGGTGCGGGCGTCCGACCCGGACGCGTACCGCGTCACGAGGTTCGTCTACGCGACGTCGAGCGTCCGCCTCCCCGACGCGTTCATGCCGAGGCCCGCGCCGTCGGCGGGCGCGGCGTGGAGCGGGGAGTCCAACTGGATGGGGTACGTGGCCGTGGCCGCCGACGGCGTCGCCGCGAAGGCCGGGAGGCGGGACATCGTGGTGGCGTGGCGCGGGACGAAGCGCGCGGTGGAGTGGGCCAACGACCTGGACATCACGCTGGTGCCGGCGGACGGCGTCGTCGGTCCGGGCCCGGGCTGGACGCAGCCGTCGGTGCACAGGGGGTTCCTGTCCGTCTACACGTCCAAGAGTTTCTCGTCGCCGTTCAACAAACTTAGCGCGCGAGAGCAGGTATAATTAGTTGCGACTCCCTCGCATTTACGCCCTTAATTAATCTAGACTTGGCCAATACAGTATATCATTTTCTTAAAAAATAATTAATAAAACAGTATAGTACTATACTGTTTCATTATTTTTTTATAGAAAAAATGTGATACTGTTTTGGCCGTGCTACTTTACGCTCGCCACTGTGGCCCAATCATTCACATATTTGCACAAGGATTATAGTTCACGGTTTGGACTTTCGTTTCCTCCAACATAAGGTGTCTCCAGTACAGACAGAGCTATTAAAAGAAGGCATAGAAAATTGAAGAGTGCAAGAGACAGTTTCACACTCATTCTGGGGAACTGACGAATAATTTCGTTCACACATTAGTCTGGAGGAACTAACCAATAATTTGACATCTCATCTGAACTGCACATGTTGTTCTTGATAGGGAATGCTGTTTTTCTCTAGAGTAGGACCGCCCTCGGATATTGTTTGGAGCATCTAATAACCTCCATAGAAAACAAAGTAGCAAAATTTCGGTAACTTTAACCTGTACAATATGGAATGAACTATAATGGTCATTGCCATGGGATTCTCCATAAGGTTTTCAAATCAAAGTGTACTACTACCTCCGTCCCAAAATAAGTGCAGCCATAAGTTTCCGCGCTCAACTTTAATCGTCCGTCTTATTTAAAATTTTTTTATAATTAGCATTTTTGTTGCTATGAGATGATAAAACATGAATAGTACTTTACTCGTGACTTATGTTTTTAATTTTTTTTAAAAAAATTTCAAATAAGACGAACGGTCAAAGTTGGACGCGGAAAACCATGGCTGAACTTATTTTGGGACGGAGGAAGTAATAATAAAAAATCCAGATAGAACATGTGTCCAAGACATAATTGTGCGTTGAATCTTTTAAAAAGAGAAGTTGAGGGACATGGTAACTTCCAGATTTTTTACGTCTTGTCTTGCTCCAGAGAATCTGTTGCGTTTGAACATACGAAGACAGTGGACTTGTACATATTTTCCAGATTTTCTGTACATAAATTGCTTTTTTTTTCAAAATGCATTTGTAGCAATTCGATGAGGCTCATGTAGTCATGCATACAAATGCAATTTCAGAATATCCTTTGCATTTATTATTTAAGATCTTTCAGTTAGAGAAAATAAACTGGTTGAGGGGGTAAAAGGCTCATTTGTTCATGGAAATATCTTGTACATCTATCAACAATTTTTCTCTCAAAAATTATCAAATGTAAATACATTATAATTATAATATAATTACATTTAGTTTATATGAAAGTATAATATAACTTGTATGTAACTTTCAAAAAGATCCAGGGGAGGTCTCAGAGGAGCAAATCTAATGATACAAAATTATGTGAAACTTACATATAAATTATACTGTAGTTAAAATGTAATCACAGTATATTTATATTTAATAATTTTTGGAGGAAAAATGTCGATAGTTCGATATATGTGTAGCAAAATCGCTCAGTCGGAGGTGGGATGTGATCATGTGGAGTCCAACATCCCTTACTTACGACAGCCCAAAACATAGCTATATATGTACACTTCCAAGTCCAAATCAAGCAGAAAAGCCCTTTTTTTTTTCTTTTTTTGCGGGGACGAAAAGCCCAAATTAACCTTCTAGCAATTTCATTTTTTTTAGGAAGAGGTACTCTTCGATCGAAAGAGACGGAATATATTTAGAGCTAGTACGATTGCTTCAAATTCTGATTGGAACAACAAATTCGATGCTATTTTCTGAAAAAAAATTGCAACAAAATTTATGCAGGTGCTAGCTGAAATAACTAGACTTCTGCGCGCGTACAAGAACGAGAACTGCAGCATCACCATAACGGGCCACAGCCTGGGCGCCGCGCTCTCCACGCTCAACGCCATCGACATCGTCGCCAACGGCTACAACGTCCGCGGCTCGTCCCGCGTCCCGGTCCCCGTCACGGCAATCGCCCTCGCCAGCCCGCGCGTCGGCGACGATCAGTTCAAGAGGGCCTTCGACTCGACGTCCAACCTGAGCCTGCTCCGCGTCCGCAACGCGCCGGACATCGTGCCGACCATCCTGCCGTCGGCCTTCTTCAAGGACGTCGGCGCGGAGCTGCTCGTGGACACGCGCCGGTCGCCGTACCTGAAGAACCCGGCGGGCCCGGCCCAGTGGCACAACCTCGAGTGCTACCTGCACGCCGTCGCGGGCACGCAGGGCGCCGGCGACGGCGCGGGGTTCAGCCTTGTGGTGGACCGTGACCTGGCGCTGGTGAACAAGGAAGTGGACGCGCTCAGGGACGAGTACCAGGTGCCGGCGGCGTGGTGGGTGGAGAAGAACAAGGGCATGGTGCAGAACGCGAGCGGGCGCTGGGTCTTGCAAGATCACGAGGAGGGCAACCTTGCAATGTGATGGATTTGGGGAATTTTGTGGAATCCAATAAACTGATGGGTTTATTGCTTGGATGGAAGTTTTCCAAGAAAAACATGAATAGTAAGGGCCGTGGAAATGCAGATATAAATTATGTATGTACGTCTGAAAATTCTGAGTTGTAACTGAAAATTCTTACGGCCCCTTTGAAACGTATGATTATC
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| CDS seq | ATGTGTTGCTTTCTGCTGGTCTCTGTACTGCTAGCCACCACTCTCACCGACGTAGCCAGTGCACAGAGATGGAGGCAGACGAGCGGCGGCGGCAAGGACAGGTGGGACGGCCTCCTCGACCCACTCGACGCCGACCTCCGGCGCGACATCATCCGCTACGGCGAGCTGGCGCAGGCGACGTCGGACGCGCTCATCGGCGACCCGGCGTCGCCGTTCGCCGGCGCGTCGCGGTACGCGCCCGACGCGTTCCTCCGCAAGGTGCGGGCGTCCGACCCGGACGCGTACCGCGTCACGAGGTTCGTCTACGCGACGTCGAGCGTCCGCCTCCCCGACGCGTTCATGCCGAGGCCCGCGCCGTCGGCGGGCGCGGCGTGGAGCGGGGAGTCCAACTGGATGGGGTACGTGGCCGTGGCCGCCGACGGCGTCGCCGCGAAGGCCGGGAGGCGGGACATCGTGGTGGCGTGGCGCGGGACGAAGCGCGCGGTGGAGTGGGCCAACGACCTGGACATCACGCTGGTGCCGGCGGACGGCGTCGTCGGTCCGGGCCCGGGCTGGACGCAGCCGTCGGTGCACAGGGGGTTCCTGTCCGTCTACACGTCCAAGAGTTTCTCGTCGCCGTTCAACAAACTTAGCGCGCGAGAGCAGGTGCTAGCTGAAATAACTAGACTTCTGCGCGCGTACAAGAACGAGAACTGCAGCATCACCATAACGGGCCACAGCCTGGGCGCCGCGCTCTCCACGCTCAACGCCATCGACATCGTCGCCAACGGCTACAACGTCCGCGGCTCGTCCCGCGTCCCGGTCCCCGTCACGGCAATCGCCCTCGCCAGCCCGCGCGTCGGCGACGATCAGTTCAAGAGGGCCTTCGACTCGACGTCCAACCTGAGCCTGCTCCGCGTCCGCAACGCGCCGGACATCGTGCCGACCATCCTGCCGTCGGCCTTCTTCAAGGACGTCGGCGCGGAGCTGCTCGTGGACACGCGCCGGTCGCCGTACCTGAAGAACCCGGCGGGCCCGGCCCAGTGGCACAACCTCGAGTGCTACCTGCACGCCGTCGCGGGCACGCAGGGCGCCGGCGACGGCGCGGGGTTCAGCCTTGTGGTGGACCGTGACCTGGCGCTGGTGAACAAGGAAGTGGACGCGCTCAGGGACGAGTACCAGGTGCCGGCGGCGTGGTGGGTGGAGAAGAACAAGGGCATGGTGCAGAACGCGAGCGGGCGCTGGGTCTTGCAAGATCACGAGGAGGGCAACCTTGCAATGTGA
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| Protein seq | MCCFLLVSVLLATTLTDVASAQRWRQTSGGGKDRWDGLLDPLDADLRRDIIRYGELAQATSDALIGDPASPFAGASRYAPDAFLRKVRASDPDAYRVTRFVYATSSVRLPDAFMPRPAPSAGAAWSGESNWMGYVAVAADGVAAKAGRRDIVVAWRGTKRAVEWANDLDITLVPADGVVGPGPGWTQPSVHRGFLSVYTSKSFSSPFNKLSAREQVLAEITRLLRAYKNENCSITITGHSLGAALSTLNAIDIVANGYNVRGSSRVPVPVTAIALASPRVGDDQFKRAFDSTSNLSLLRVRNAPDIVPTILPSAFFKDVGAELLVDTRRSPYLKNPAGPAQWHNLECYLHAVAGTQGAGDGAGFSLVVDRDLALVNKEVDALRDEYQVPAAWWVEKNKGMVQNASGRWVLQDHEEGNLAM |
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| Function | Phospholipase A1-II 3 [UniProtKB/Swiss-Prot:Q8RZ40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0651800 | OsNip_01t0651800-01 | Chr01 | 26321416 | 26324769 | + | RAP2018-11-26 | ||
| CDS seq | ATGTGTTGCTTTCTGCTGGTCTCTGTACTGCTAGCCACCACTCTCACCGACGTAGCCAGTGCACAGAGATGGAGGCAGACGAGCGGCGGCGGCAAGGACAGGTGGGACGGCCTCCTCGACCCACTCGACGCCGACCTCCGGCGCGACATCATCCGCTACGGCGAGCTGGCGCAGGCGACGTCGGACGCGCTCATCGGCGACCCGGCGTCGCCGTTCGCCGGCGCGTCGCGGTACGCGCCCGACGCGTTCCTCCGCAAGGTGCGGGCGTCCGACCCGGACGCGTACCGCGTCACGAGGTTCGTCTACGCGACGTCGAGCGTCCGCCTCCCCGACGCGTTCATGCCGAGGCCCGCGCCGTCGGCGGGCGCGGCGTGGAGCGGGGAGTCCAACTGGATGGGGTACGTGGCCGTGGCCGCCGACGGCGTCGCCGCGAAGGCCGGGAGGCGGGACATCGTGGTGGCGTGGCGCGGGACGAAGCGCGCGGTGGAGTGGGCCAACGACCTGGACATCACGCTGGTGCCGGCGGACGGCGTCGTCGGTCCGGGCCCGGGCTGGACGCAGCCGTCGGTGCACAGGGGGTTCCTGTCCGTCTACACGTCCAAGAGTTTCTCGTCGCCGTTCAACAAACTTAGCGCGCGAGAGCAGGTGCTAGCTGAAATAACTAGACTTCTGCGCGCGTACAAGAACGAGAACTGCAGCATCACCATAACGGGCCACAGCCTGGGCGCCGCGCTCTCCACGCTCAACGCCATCGACATCGTCGCCAACGGCTACAACGTCCGCGGCTCGTCCCGCGTCCCGGTCCCCGTCACGGCAATCGCCCTCGCCAGCCCGCGCGTCGGCGACGATCAGTTCAAGAGGGCCTTCGACTCGACGTCCAACCTGAGCCTGCTCCGCGTCCGCAACGCGCCGGACATCGTGCCGACCATCCTGCCGTCGGCCTTCTTCAAGGACGTCGGCGCGGAGCTGCTCGTGGACACGCGCCGGTCGCCGTACCTGAAGAACCCGGCGGGCCCGGCCCAGTGGCACAACCTCGAGTGCTACCTGCACGCCGTCGCGGGCACGCAGGGCGCCGGCGACGGCGCGGGGTTCAGCCTTGTGGTGGACCGTGACCTGGCGCTGGTGAACAAGGAAGTGGACGCGCTCAGGGACGAGTACCAGGTGCCGGCGGCGTGGTGGGTGGAGAAGAACAAGGGCATGGTGCAGAACGCGAGCGGGCGCTGGGTCTTGCAAGATCACGAGGAGGGCAACCTTGCAATGTGA
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| Protein seq | MCCFLLVSVLLATTLTDVASAQRWRQTSGGGKDRWDGLLDPLDADLRRDIIRYGELAQATSDALIGDPASPFAGASRYAPDAFLRKVRASDPDAYRVTRFVYATSSVRLPDAFMPRPAPSAGAAWSGESNWMGYVAVAADGVAAKAGRRDIVVAWRGTKRAVEWANDLDITLVPADGVVGPGPGWTQPSVHRGFLSVYTSKSFSSPFNKLSAREQVLAEITRLLRAYKNENCSITITGHSLGAALSTLNAIDIVANGYNVRGSSRVPVPVTAIALASPRVGDDQFKRAFDSTSNLSLLRVRNAPDIVPTILPSAFFKDVGAELLVDTRRSPYLKNPAGPAQWHNLECYLHAVAGTQGAGDGAGFSLVVDRDLALVNKEVDALRDEYQVPAAWWVEKNKGMVQNASGRWVLQDHEEGNLAM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.514509 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0574000 | RBH | 0.0 | 0.0 | 21.386841 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46290 | RBH | 0.0 | 0.0 | 0.372379 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0651800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027440 | RBH | 0.124574 | 28.893965 | 1.043918 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026920 | RBH | 0.0 | 14.966231 | 0.496694 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027380 | RBH | 0.0 | 17.359348 | 0.273477 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026620 | RBH | 0.0 | 0.372488 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026370 | RBH | 0.0 | 4.339398 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0441500 | RBH | 1.238247 | 0.781656 | 2.242853 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026050 | RBH | 0.0 | 1.033537 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0430600 | RBH | 2.8814365 | 0.063907 | 13.352359 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026220 | RBH | 0.0 | 8.794473 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026550 | RBH | 0.0 | 20.702450 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026600 | RBH | 0.0 | 0.183676 | 0.150957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026430 | RBH | 0.0 | 1.818583 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026810 | RBH | 0.0 | 0.583232 | 1.047078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026580 | RBH | 0.0 | 0.0 | 0.269473 |
