Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0490600 | OGI:05065310 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:24110841-24114828 | ||||||||
| Gene Symbol | OsMyb5, OSMYB5, MYB5 | ||||||||||
| DNA seq | AGCAGATGAAATTCAACATAGCACGCATGGTAATTTCGACATGAAGAAAAGTAAAGGAGTACGGCAATATCCAAACTGGAAATCCTAATAAGAGAGATAGCAACGACTGGCTCGTTCACGAGCTTCATGGAATAAAATTCTTGGTTTCATGATGAGTTTATCCAAGAGAGCAGCAACTCATGACAATCTGGCGTCAGTTACCTGGAATTGCAAGAACAAATATTTTTAGAAAAAGGATGATTTCAACCATAAGCAAGTTCTATGAAACATAACATGCCATCACAAGTTCACCTTTAGTATCCAACTTGTTTTCCAAAAACAATTCATTTGTGTCTTCGAATATGGATAGATTAGTATCATTCAAATAGAAATATGATGTGAAATCATCTTGAAGAGGTGGAGCATCTCCTTCATATTGTGGCACTACCAGCTCATTAGAGGCAGCCATGGAGTTATGTGCTTCAAAAAGATATCAACAAATCAACAGCTAAATTACTATATAAGTAAAAGATGAAATAAGTAAACTATACGAACCGAAAGAAAGTTCAAAGTTATGAAGCTCTTCCGACGATACTGGACTATTGTGTGTGTAAAAATCAAGATCTTGTTCCCGATATCCCTTGCATAAAGGGAGTTCTGAAGAATCTGCCATACCTTCACATGGCATATTAATAGTAGGACTCAAACTCCCTCCAGAAAGCTCTTCTTTCATCACCACATAGTTCAATACATCAGTATCATTTAGTAATTCTTCTGATTGATCATTTAATAAAGCAAAGTTTGTTAGGTGCATCGCATAAGCCCTTGAGTAAACGAACTGGTTGTTTGGATCAAATTGGATTAAAGGGAGCTCCATCTGCAAAGCATCAGTTGTGGACAAAGCAGAGAGATTGCCATTTGAAATACCATGGTTGGCAAAGATAGAGGCTGCAAAAGATGGCATGGTCTTATCATTAGAGTTAGTCACAAAGTGATACGAAGTCAATACCAAAAGCTTATGTGTAGAGTGGTTTAGGGGATAGCTCACCTGATGGAAATATGTCATTGTTCGTTGTTTTCAACACAGGAAGTGGAATCTCATATTTTGCTACAACTTCTATTTGGTTTCTTTGATCTTCTATGGAGTCATAATCTTTTGATGCAAGTCTCCTATCAAGTATATTACTGATGGAAGCATCTGAAAACTGGGGTGCAGAATACATACTAGTAGTATCTTCTAGATGATTATTGGTCAGCTTCTCCCTAACGTTGGGGTCAGCAGACTCATGTTGATCTTCATTCAAAGCATCGTTGCATACATTAGCAGGATACAAAGGCGAACGATTGTTCTTGCATTTCTTTATTCGAGTGTTCCAGTAGTTCTTTATTTCATTATCAGTACGCCCTGGCAACTGAGAACATGTGGTCAAGTTAATAACAATGATAATAGATAGAACAATGCATATAACAGTAACAATGTTCTAAAACAACAACTAAGATAGTTATATGCATAAAGCTAGACCCCAAGTTTCACTTTAACTTTTAGCTTGTCCCACGGCTCCTTATTTTCAGTAGAACTAAACCAGGCCGATGATTGCAAGTGCAATGAAAAGATACTAGCAGTTTACTTTAAATAGCAACCCCTAAGCCATACAAGCAAAAATAGGCTACATTTCTAAGATAATTTCAAGGATGGGACTTTGACAATATTTATATCTGCTGATTAGGGTTGATCTGATTTGTGATGATAATCATATTTTAGGATAAACTTGTAATGCAAAAACTACCAAATATTAATTGAAATAAATGAAATGGATAACATTTGTTTAGTTGAAGAAAATAACTTCACCAACATTTGAACTACAAATATTAATAATACCCATACCTCCATGTAAAGGTTGCAAAACATATTTGTAATGCAACTGGAAAAAAAAACTACCCAACTTTAAATTAAATAACTTTACCAATGGATGAACTACAAATATTAATATCCCCGTACCTCCCCTCCATGTAAAGGTCACCAAACATACTTGTGATGCAAAAACTATTAAAGAACAACACTTTTATAAATGGTTTCAAGAGATATATATTTTGAGAGCAAAAGAAAAAAAAATGAACTACAAGGTAAACTTACATCAGCAGCCATCCGAGACCACTTATTCCCCATTTTGCGATGAAGATTAATAATTTTATTCTCTTCTTCCTTGCTGAAAGCCCCCTTCTTTAGGTTAGGCCTCAGATGGTTCATCCACCGAAGACGGCAACTCTTGCCACACCTCAAGAGGCCAGTGTTCTTCTGCACAAGCTTCCAGTTCCTTTCACCATGCTTCTTGATGTACTTCTCTAAGATGGAGTCCTCCCAAGATGTCCATGGACCTTTCTTCAACAGCAGGGCTACGGTGCTCCTTCTGCAATCTTTATCTTTATCAACAAATGACTCGTCATCGCTATTGCTCATATACCAGTGTGTCCTGTCAGAATCAGGATCGCTGTCGCTCTCGTGCATCCTGTCACAAACACGAGTTGAACTATCAAAAATAAAACAGAAATATGTGTACATGAAAATGTTAGGTCAGTGGCCACGGCTAGCAGAGATTAACAAATTTATACCCATATAAAACTTTTACAAAAATCGCCAAGGTATAAAAAAAAACGGATACAACACTTAATTTCTAAAATCAAGAAATGGAGTGACGCCTACTTATAAAAAAGAGTAAAATGCATGGAGGGTCATATAACTTGTTCAGATGTGTCGTGTAGGTCACTCTACTTTCAAAATGCACATTAAGTCACTAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGTTAATGAATCTAAACATATATATCTATCTAGATTCATTAACATCAATATAAATGTGGAAAATGCTAGAATGATTTACATTGTGAAACGGAGGAAGTATGAGTTAAGTGAGTCATTAGCTCATTTAACTATCCAAATGATCACACTTTTTTACACATGACATGCCATCTAGGATTGAAAATTTGCTTCTAGATATGTGCAAAAAAAAAAACCCTGTTTTATTTCCCTTCTCCTAACACTACCCCTTGCCAATACACGGAATTCACAATATATATCAACTCACATCGATCAATTCCTGGAAGCTATATGTACTATTTATACAGGTATCGTAGCCATGAAGATTGCTTGTTGCTAACACGTTGTGCGCTAATTCCGGGATTGGCTAATGATGTACGGTAGGACTTAAACAAAATCACAATATAGAGGGTTTTTCTGCATTATGGAGACTATTCGTCAAAACAGCCATAAGTGAAATGATTCGATTAAATTAATTAAGTATGGGGTTATTTATGTGCAGAAGCAAATTTTCAATCATATGTGGCTATGCTCATATTTATAGTTAATTGTGTCAATAACTCACTTAACTCACATTAGTGACCTACATGTGCATTTTGAAAGAAAAGTGACCTATATGATACACCTAAACAAGTTAGATGATCCTCCATGCATTTTACTCTATAAAAAAATAATGAGATGCACTCACAGTTCCAATCTCAACTGAGATTGGTAATTTCAGTGAAGTAGATTGAAACGAGCACAGATTAGTAGATTACACAACATATCGTGCAAGAAACAGATCCACTAAAATCTCTTAGGACTATTCCCAACAATTCACCGATCAAACCACTAAATATGACCCCCCAAGAAAAGAATAAGCAACGCCACCGGTCCATTTTTTACCTGACCAAAAATGCAGGGTGACGGAGCGGTGGGCTGTCGGAGTGTGGAGTGTCGCCGGAGCCGGGACAAAACCTCCGCCCTCCCACCGGAAATGGTCACCGGCCGCCACTCTCTGCGACGGAAGAGACGCGATGTGAAGGGGAGTTCGCTGAGGCGAGATGGGAGATGGAGATGGGAGATCGCCTCCCCCGGCAATGGCGGAGCGGGGAGTTTCGGGGGCGGCGGCGTGAGCGCGAGCACGAGTATATGTGCGGCAAC
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| CDS seq | ATGCACGAGAGCGACAGCGATCCTGATTCTGACAGGACACACTGGTATATGAGCAATAGCGATGACGAGTCATTTGTTGATAAAGATAAAGATTGCAGAAGGAGCACCGTAGCCCTGCTGTTGAAGAAAGGTCCATGGACATCTTGGGAGGACTCCATCTTAGAGAAGTACATCAAGAAGCATGGTGAAAGGAACTGGAAGCTTGTGCAGAAGAACACTGGCCTCTTGAGGTGTGGCAAGAGTTGCCGTCTTCGGTGGATGAACCATCTGAGGCCTAACCTAAAGAAGGGGGCTTTCAGCAAGGAAGAAGAGAATAAAATTATTAATCTTCATCGCAAAATGGGGAATAAGTGGTCTCGGATGGCTGCTGATTTGCCAGGGCGTACTGATAATGAAATAAAGAACTACTGGAACACTCGAATAAAGAAATGCAAGAACAATCGTTCGCCTTTGTATCCTGCTAATGTATGCAACGATGCTTTGAATGAAGATCAACATGAGTCTGCTGACCCCAACGTTAGGGAGAAGCTGACCAATAATCATCTAGAAGATACTACTAGTATGTATTCTGCACCCCAGTTTTCAGATGCTTCCATCAGTAATATACTTGATAGGAGACTTGCATCAAAAGATTATGACTCCATAGAAGATCAAAGAAACCAAATAGAAGTTGTAGCAAAATATGAGATTCCACTTCCTGTGTTGAAAACAACGAACAATGACATATTTCCATCAGCCTCTATCTTTGCCAACCATGGTATTTCAAATGGCAATCTCTCTGCTTTGTCCACAACTGATGCTTTGCAGATGGAGCTCCCTTTAATCCAATTTGATCCAAACAACCAGTTCGTTTACTCAAGGGCTTATGCGATGCACCTAACAAACTTTGCTTTATTAAATGATCAATCAGAAGAATTACTAAATGATACTGATGTATTGAACTATGTGGTGATGAAAGAAGAGCTTTCTGGAGGGAGTTTGAGTCCTACTATTAATATGCCATGTGAAGCACATAACTCCATGGCTGCCTCTAATGAGCTGGTAGTGCCACAATATGAAGGAGATGCTCCACCTCTTCAAGATGATTTCACATCATATTTCTATTTGAATGATACTAATCTATCCATATTCGAAGACACAAATGAATTGTTTTTGGAAAACAAGTTGGATACTAAAGGTAACTGA
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| Protein seq | MHESDSDPDSDRTHWYMSNSDDESFVDKDKDCRRSTVALLLKKGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHLRPNLKKGAFSKEEENKIINLHRKMGNKWSRMAADLPGRTDNEIKNYWNTRIKKCKNNRSPLYPANVCNDALNEDQHESADPNVREKLTNNHLEDTTSMYSAPQFSDASISNILDRRLASKDYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHGISNGNLSALSTTDALQMELPLIQFDPNNQFVYSRAYAMHLTNFALLNDQSEELLNDTDVLNYVVMKEELSGGSLSPTINMPCEAHNSMAASNELVVPQYEGDAPPLQDDFTSYFYLNDTNLSIFEDTNELFLENKLDTKGN |
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| Function | Transcription factor GAMYB [UniProtKB/Swiss-Prot:A2WW87] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0490600 | OsNip_05t0490600-00 | Chr05 | 24110841 | 24114828 | - | RAP2018-11-26 | ||
| CDS seq | ATGCACGAGAGCGACAGCGATCCTGATTCTGACAGGACACACTGGTATATGAGCAATAGCGATGACGAGTCATTTGTTGATAAAGATAAAGATTGCAGAAGGAGCACCGTAGCCCTGCTGTTGAAGAAAGGTCCATGGACATCTTGGGAGGACTCCATCTTAGAGAAGTACATCAAGAAGCATGGTGAAAGGAACTGGAAGCTTGTGCAGAAGAACACTGGCCTCTTGAGGTGTGGCAAGAGTTGCCGTCTTCGGTGGATGAACCATCTGAGGCCTAACCTAAAGAAGGGGGCTTTCAGCAAGGAAGAAGAGAATAAAATTATTAATCTTCATCGCAAAATGGGGAATAAGTGGTCTCGGATGGCTGCTGATTTGCCAGGGCGTACTGATAATGAAATAAAGAACTACTGGAACACTCGAATAAAGAAATGCAAGAACAATCGTTCGCCTTTGTATCCTGCTAATGTATGCAACGATGCTTTGAATGAAGATCAACATGAGTCTGCTGACCCCAACGTTAGGGAGAAGCTGACCAATAATCATCTAGAAGATACTACTAGTATGTATTCTGCACCCCAGTTTTCAGATGCTTCCATCAGTAATATACTTGATAGGAGACTTGCATCAAAAGATTATGACTCCATAGAAGATCAAAGAAACCAAATAGAAGTTGTAGCAAAATATGAGATTCCACTTCCTGTGTTGAAAACAACGAACAATGACATATTTCCATCAGCCTCTATCTTTGCCAACCATGGTATTTCAAATGGCAATCTCTCTGCTTTGTCCACAACTGATGCTTTGCAGATGGAGCTCCCTTTAATCCAATTTGATCCAAACAACCAGTTCGTTTACTCAAGGGCTTATGCGATGCACCTAACAAACTTTGCTTTATTAAATGATCAATCAGAAGAATTACTAAATGATACTGATGTATTGAACTATGTGGTGATGAAAGAAGAGCTTTCTGGAGGGAGTTTGAGTCCTACTATTAATATGCCATGTGAAGCACATAACTCCATGGCTGCCTCTAATGAGCTGGTAGTGCCACAATATGAAGGAGATGCTCCACCTCTTCAAGATGATTTCACATCATATTTCTATTTGAATGATACTAATCTATCCATATTCGAAGACACAAATGAATTGTTTTTGGAAAACAAGTTGGATACTAAAGGTAACTGA
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| Protein seq | MHESDSDPDSDRTHWYMSNSDDESFVDKDKDCRRSTVALLLKKGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHLRPNLKKGAFSKEEENKIINLHRKMGNKWSRMAADLPGRTDNEIKNYWNTRIKKCKNNRSPLYPANVCNDALNEDQHESADPNVREKLTNNHLEDTTSMYSAPQFSDASISNILDRRLASKDYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHGISNGNLSALSTTDALQMELPLIQFDPNNQFVYSRAYAMHLTNFALLNDQSEELLNDTDVLNYVVMKEELSGGSLSPTINMPCEAHNSMAASNELVVPQYEGDAPPLQDDFTSYFYLNDTNLSIFEDTNELFLENKLDTKGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0812000 | RBH | 0.000000 | 0.000000 | 5.354534 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41166 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0490600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021760 | RBH | 0.0 | 0.0 | 1.072849 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0373600 | RBH | 0.021964 | 0.05936 | 0.162332 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021310 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0334600 | SBH | 6.1099175 | 23.7581665 | 2.7733995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021710 | RBH | 0.0 | 0.256685 | 0.123969 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021130 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021580 | SBH | 3.581550 | 20.672453 | 17.506083 |
