Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0021710 | OGI:05065310 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:25033286-25037373 | ||||||||
| Gene Symbol | OsMyb5, OSMYB5, MYB5 | ||||||||||
| DNA seq | gcacaacattgcaacgtgttgcagcaaaatcttttgaattcgacagtttaacacacacaatagcagatgaaattcaacatagcacgcatggtaatttcgacatgaagaaaagtaaaggagtacggcaatatccaaactggaaatcctaataagagagatagcaacgactggctcgttcacgagcttcatggaataaaattcttggtttcatgatgagtttgtccaagagagcagcaactcatgacaatctggcgtcagttacctggaattgcaagaacaaatatttttagaaaaaggatgatttcaaccataagcaagttctatgaaacataacatgccatcacaagttcacctttagtatccaacttgttttccaaaaacaattcatttgtgtcttcgaatatggatagattagtatcattcaaatagaaatatgatgtgaaatcatcttgaagaggtggagcatctccttcatatcgtggcactaccagctcattagaggcagccatggagttatgtgcttcaaaaagatatcaacaaatcaatagctaaattactatataagtaaaagatgaaataagtaaactatacgaaccgaaagaaagttcaaagttatgaagctcttccgacgatactggactattgtgtgtgtaaaaatcaagatcttgttcccgatatcccttgcataaagggagttctgaagaatctgccataccttcacatggcatattaatagtgggactcaaactccctccagaaagctcttctttcatcaccacatagttcaatacatcagtatcatttagtaattcttctgattgatcatttaataaagcaaagtttgttaggtgcgtcgcataagcccttgagtaaacgaactggttgtttggatcaaattggattaaagggagctccatctgcaaagcatcagttgtggacaaagcaaagagattgccatttgaaataccatggttggcaaagatagaggctgcaaaagatggcatggtcttatcattagagttagtcacaaagtgatacgaagtcaataccaaaagcttatgtgtagagtggtttaggggatagctcacctgatggaaatatgtcattgttcgttgttttcaacacaggaagtggaatctcatattttgctacaacttctatttggtttctttgatcttctatggagtcataatcttttgatgcaagtctcctatcaagtatattactgatggaagcatctgaaaactggggtgcagaatacatactagtagtatcttctagctgattattggtcagcttctccctaacattggggtcagcagactcatgttgatcttcattcaaagcatcgttgcatacattagcaggatacaaaggcgaacgattgttcttgcatttctttattcgagtgttccagtagttctttatttcattatcagtacgccctggcaactgagaacatgtggtcaagttaataacaatgataatagatagaacaatgcatataacagtaacaatgttctaaaacaacaactaagatagttatatgcataaagctagaccccaagtttcactttaacttttagcttgtcccatggctccttattttcagtagaactaaaccaggccgatgattgcaagtgcaatgaaaagatactagcagtttactttaaatagcaacccctaagccatacaagcaaaaataggctacatttctaagataatttcaaggatgggactttgacaatatttatatctgctgattagggttgatctgatttgtgatgataatcatattttaggataaacttgtaatgcaaaaactaccaaatattaattgaaataaatgaaatggataacatttgtttagttgaagaaaataacttcaccaacatttgaactacaaatattaataatacccatacctccatgtaaaggttgcaaaacatatttgtaatgcaactggaaaaaaaaactacccaactttaaattaaataactttaccaatggatgaactacaaatattaatatccccgtacctcccctccatgtaaaggtcaccaaacatacttgtgatgcaaaaactattaaagaacaacacttttataaatggtttcaagagatatatattttgagagcaaaagaaaaaaaaatgaactacaaggtgaacttacatcagcagccatccgagaccacttattccccattttgcgatgaagattaataattttattctcttcttccttgctgaaagcccccttctttaggttaggcctcagatggttcatccaccggagacggcaactcttgccacacctcaagaggccagtgttcttctgcacaagcttccagttcctttcaccatgcttcttgatgtacttctctaagatggagtcctcccaagatgtccatggacctttcttcaacagcggggctacggtgctccttctgcaatctttatctttatcaacaaatgactcgtcatcgctattgctcatataccagtgtgtcctgtcagaatcaggatcgctgtcgctctcgtgcatcctgtcacaaacacgagttgaactatcaaaaataaaacagaaatatgtgtacatgaaaatgttaggtcagtggccacggctagcagagattaacaaatttatacccatataaaacttttacaaaaatcgcaaggtataaaaaaaacggatacaacacttaatttctaaaatcaagaaatggagtgacgcctacttatAaaaaagagtaaaatgcatggagggtcatataacttgttcagatgtgtcgtgtaggtcactctactttcaaaatgcacattaagtcactaatacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatctaaacatatatatctatctagattcattaacatcaatataaatgtggaaaatgctagaatgatttacattgtgaaacggaggaagtatgagttaagtgagtcattagctcatttaactatccaaatgatcacacttttttacacatgacatgccatctaggattaaaaatttgcttctagatatgtgcaaaaaaaaaaaaaccctgttttatttcccttatcctaacactaccccttgccaatacacggaattcacaatatatatcaactcacatcgatcaattcctggaagctatatgtactatttatacaggtatcgtagccatgaagattgcttgttgctaacacgttgtgcgctaattccgggattggctaatgatgtacggtgggacttaaacaaaatcacaatatagagggtttttctgcattatggagactattcgtcaaaacagccataagtgaaatgattcgattaaattaattaagtatggggttatttatgtgcagaagcaaattttcaatcatatgtggctatgctcatatttatagttaattgtgtcaataactcacttaactcacattagtgacctacatgtgcattttgaaagaaaagtgacctatatgatacacctaaacaagttagatgatcctccatgtattttactctataaaaaaataatgagatgcactcacagttccaatctcaactgagattggtaatttcagtgaagtagattgaaacgagcacagattagtagattacacaacatatcgcgcaagaaacagatccactaaaatctcttaggactattcccaacaattcaccgatcaaaccactaaacatgaccccccaagaaaagaataagcaacgccaccggtccattttttacctgaccaaaaacgcagggtgacggagcggtgggctgtcggagtgtcgagtgtcgccggagccgggacaaaacctccgccctcccaccggaaatggtcaccggccgccactctctgcgacggaagagacgcgatgtgaaggggagttcgctgaggcgagatgggagatggagatgggagatcgcctcccccggcaatggcggagcggggagtttcggggcggcggcgtgagcgcgagcacgagtatatgtgcggcaacgtcgcgtcggctgagcggtggttccattccaagtctatct
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| CDS seq | atgcacgagagcgacagcgatcctgattctgacaggacacactggtatatgagcaatagcgatgacgagtcatttgttgataaagataaagattgcagaaggagcaccgtagccccgctgttgaagaaaggtccatggacatcttgggaggactccatcttagagaagtacatcaagaagcatggtgaaaggaactggaagcttgtgcagaagaacactggcctcttgaggtgtggcaagagttgccgtctccggtggatgaaccatctgaggcctaacctaaagaagggggctttcagcaaggaagaagagaataaaattattaatcttcatcgcaaaatggggaataagtggtctcggatggctgctgatctgaccaataatcagctagaagatactactagtatgtattctgcaccccagttttcagatgcttccatcagtaatatacttgataggagacttgcatcaaaagattatgactccatagaagatcaaagaaaccaaatagaagttgtagcaaaatatgagattccacttcctgtgttgaaaacaacgaacaatgacatatttccatcagcctctatctttgccaaccatggtatttcaaatggcaatctctttgctttgtccacaactgatgctttgcagatggagctccctttaatccaatttgatccaaacaaccagttcgtttactcaagggcttatgcgacgcacctaacaaactttgctttattaaatgatcaatcagaagaattactaaatgatactgatgtattgaactatgtggtgatgaaagaagagctttctggagggagtttgagtcccactattaatatgccatgtgaagcacataactccatggctgcctctaatgagctggtagtgccacgatatgaaggagatgctccacctcttcaagatgatttcacatcatatttctatttgaatgatactaatctatccatattcgaagacacaaatgaattgtttttggaaaacaagttggatactaaaggtaactga
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| Protein seq | MHESDSDPDSDRTHWYMSNSDDESFVDKDKDCRRSTVAPLLKKGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHLRPNLKKGAFSKEEENKIINLHRKMGNKWSRMAADLTNNQLEDTTSMYSAPQFSDASISNILDRRLASKDYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHGISNGNLFALSTTDALQMELPLIQFDPNNQFVYSRAYATHLTNFALLNDQSEELLNDTDVLNYVVMKEELSGGSLSPTINMPCEAHNSMAASNELVVPRYEGDAPPLQDDFTSYFYLNDTNLSIFEDTNELFLENKLDTKGN |
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| Function | Transcription factor GAMYB [UniProtKB/Swiss-Prot:A2WW87] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0021710 | OsLiXu_05g0021710.01 | Chr05 | 25033540 | 25035831 | - | NAM | ||
| CDS seq | atgcacgagagcgacagcgatcctgattctgacaggacacactggtatatgagcaatagcgatgacgagtcatttgttgataaagataaagattgcagaaggagcaccgtagccccgctgttgaagaaaggtccatggacatcttgggaggactccatcttagagaagtacatcaagaagcatggtgaaaggaactggaagcttgtgcagaagaacactggcctcttgaggtgtggcaagagttgccgtctccggtggatgaaccatctgaggcctaacctaaagaagggggctttcagcaaggaagaagagaataaaattattaatcttcatcgcaaaatggggaataagtggtctcggatggctgctgatctgaccaataatcagctagaagatactactagtatgtattctgcaccccagttttcagatgcttccatcagtaatatacttgataggagacttgcatcaaaagattatgactccatagaagatcaaagaaaccaaatagaagttgtagcaaaatatgagattccacttcctgtgttgaaaacaacgaacaatgacatatttccatcagcctctatctttgccaaccatggtatttcaaatggcaatctctttgctttgtccacaactgatgctttgcagatggagctccctttaatccaatttgatccaaacaaccagttcgtttactcaagggcttatgcgacgcacctaacaaactttgctttattaaatgatcaatcagaagaattactaaatgatactgatgtattgaactatgtggtgatgaaagaagagctttctggagggagtttgagtcccactattaatatgccatgtgaagcacataactccatggctgcctctaatgagctggtagtgccacgatatgaaggagatgctccacctcttcaagatgatttcacatcatatttctatttgaatgatactaatctatccatattcgaagacacaaatgaattgtttttggaaaacaagttggatactaaaggtaactga
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| Protein seq | MHESDSDPDSDRTHWYMSNSDDESFVDKDKDCRRSTVAPLLKKGPWTSWEDSILEKYIKKHGERNWKLVQKNTGLLRCGKSCRLRWMNHLRPNLKKGAFSKEEENKIINLHRKMGNKWSRMAADLTNNQLEDTTSMYSAPQFSDASISNILDRRLASKDYDSIEDQRNQIEVVAKYEIPLPVLKTTNNDIFPSASIFANHGISNGNLFALSTTDALQMELPLIQFDPNNQFVYSRAYATHLTNFALLNDQSEELLNDTDVLNYVVMKEELSGGSLSPTINMPCEAHNSMAASNELVVPRYEGDAPPLQDDFTSYFYLNDTNLSIFEDTNELFLENKLDTKGN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0021710 | OsLiXu_05g0021710.02 | Chr05 | 25033286 | 25037373 | - | IsoSeq | ||
| CDS seq | atagacttggaatggaaccaccgctcagccgacgcgacgttgccgcacatatactcgtgctcgcgctcacgccgccgccccgaaactccccgctccgccattgccgggggaggcgatctcccatctccatctcccatctcgcctcagcgaactccccttcacatcgcgtctcttccgtcgcagagagtggcggccggtgaccatttccggtgggagggcggaggttttgtcccggctccggcgacactcgacactccgacagcccaccgctccgtcaccctgcgtttttggtcaggatgcacgagagcgacagcgatcctgattctgacaggacacactggt
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| Protein seq | IDLEWNHRSADATLPHIYSCSRSRRRPETPRSAIAGGGDLPSPSPISPQRTPLHIASLPSQRVAAGDHFRWEGGGFVPAPATLDTPTAHRSVTLRFWSGCTRATAILILTGHTG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 25034581 | 25035460 | - | OsLiXu_05g0021710.02 | OsLiXu_05g0021710.01,OsLiXu_05g0021710.02 | All |
| A5 | Chr05 | 25033805 | 25034001 | - | OsLiXu_05g0021710.02 | OsLiXu_05g0021710.01,OsLiXu_05g0021710.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.256685 | 0.123969 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0490600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41166 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0490600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021770 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021760 | RBH | 0.0 | 0.0 | 1.072849 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0373600 | RBH | 0.021964 | 0.05936 | 0.162332 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021310 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0334600 | SBH | 6.1099175 | 23.7581665 | 2.7733995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036880 | SBH | 0.332735 | 0.259228 | 1.595288 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021130 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021580 | SBH | 3.581550 | 20.672453 | 17.506083 |
