Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0481800 | OGI:05064350 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:23692939-23697385 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACACCTGCCGCGCGCGCCGTCCGCCCCCAAAAACCCTCGCCCCAAACCCCGCGCCGGCCGAAGCGGCGGCTCCGTGCGGATGCCCTCCCGTCCCGTCCCGGCGCGCCCCGGCCGGCGGTAGTAGGAAGTGGGGGGCGCCGAGCGTAAGATGCGGCGCTTCTCCCCGGCCGCCGCGGCGCTGCTCCTCCGACGCTCGCTCGCCGCCGCCGCCGCCGCCGCCTCACCAGCGCTCCGCTCGGGTCCGGTAATCTCTTGCCTCTTTTTAAAGAAATATTTGTTCGGTGGATTGAACCTAGCTGAGCCCGACTGCCCGAGGTTTATGCATGGGTGATTCCGAGGCCTCGTTGTGAAGGGAGATTGCAATTTGGACGATTGGAATTTGTAGAGAATGGGGTTACTGTGTGATTAAGTTAGGAATTTGTCTCCCATTAGTTATCCCCGAGTTAACCTGGAGATCTTGGTGTCTTGGTGGCTCGTGAGAGCTTGCATAGTGGATTTGTGAAGTTTGAGCCATGTTTAAGCATTTGGGGATTGTCGTATGATTTACTTTGTGTTGTTTTAAGGTTCATTCGCACAGTGTAACATGCCTTGCTTTGTGGCATTCAAATTGCTCATTTGAATTCTATTCGTCTTGCCTACAGAGACAGCTGGTGCGTGCCTCGCTTCTTGACGAAAGTTTGTCTACACAGACGAGTTCAGCGGCTTCAACCATGGCTGTGCAGTACCACCAATGGTCTAGTTCAGCAGACGGGGATGATGATGAGGTTCTTGAGGCTTTCAATCGGGACTGTTGTACCGATGCAGGTGCTGGTGTTTTGGATGATTCAGCATCTACTGCCTATGTTGAGAAGCTCTGCACATCAGGCAACCTCCCTGATGCTGTTCAGATTCTCCGACATTTACATGATAGGAAGATCCATGTAGGATTGGGTACGTTTAATTTGGTGCTGGAGCAAACAGGCGAAGTGAACAACTTCGTTCTTTTTGCCAAGGTGTTCAGGTACCTGCTGCTTTCCAAAATAGCTCCTGACTTGACTTCTTATACAAATGTTGCAAAGGCCCTTCAGAAGTTGGATGACTATGAACTAATACTTAAATTTGTGAGACAAGTTATGGAAATTACACATGATAGAGATCCTACAGTGATGAATCGCATTGTTTTCACCACGGCTAAATATGGACAGATTGATAAATGTTTGATCATATTTGAAGAACTGAAGAAAGATCAAAGAGGGTTAGATGTTGTCACATTCAATACCATTTTGGACATGCTTGGAAAGGCTGGTCGGGTGGATCAAATGCTTCAGGAGGTGAAGCTAATGGATGAACTTGGCCATTCTCCTGACATTGTTACATACAATACTGTAATAAACTGCTTGCGGAGGCTTGGAAGGTTAGATCAGTGCAAAATCTTCGCAAGAGAAATGGTTGAGAGAGGCATCGATCCAGATTTAAGAACATATACTGCACTGATTGATATTTTCGGGCGGGCTGGCCATATTACTGAAGCCCTTGAAATGTTTGACCAGATGAAAAGGTCACATCAACCTTCAATTTATGTCTACCGGGCCCTAATCAGTGACTTAAAGAAGGCTGGACAGTTTGAACTTGCACAAAAGTTATCTGAAGAGATGAAAACAAGTGCTTCAGAATTACTAGGCCCTGAAGATTTTAAACATAAGTTCAAGGGTAGAAAGATCAACAAGAACAAGTAAGAAAACTGTCAATGATCTTCCAGGTGTGAATATTTCGTTTGCATGTGCCTTGTGCTCATCCACTGTTTCAGCCAAAGATTCTGGGATAAGTTGAAATTTTTCAGGGAATGTATCTCATTAACAATGAGATAATCACATGGGCTTACAAAAGAGTGATGATTACTAACAGATACAATGATATCAGGCCGAGAGAACCAGAATATAAATCATAAACCTCTTTGAAATATCATGGTTGGAGGCTTTTGCTGATGTGCATTTGAAGAGACAGGAACACACTTCTCTCATTTATATCTTCACGGATGCAAGAGATTATCTAGAGACAGGTCCTTTGCTTATGAGACCTGAACTGTTTATCTGAGATTGTTCCACCATAGCGCAAACTTGAGCCAATGAAGAGTTAATTCTCGATTGAATTATGTGTGATGTGCTTCTACTGGATTATCATGTGAATGACTTGTGATTTGTTCAGCACTCACTGGTTCAATTTCTGCTTGTTCTGCACTTCTACAAGTTCAATTTCAGCATTGCCATTCATGTTCAGTGCCGTGAAGAATAGTTGGAGCCTTGAGTAAGTTGTTTAGGTCCTTGTCGTGGATCACTAGATATAACAAATTAAATATAGATCACATTCTTTTATTGTCCTCTACTTTGCCATGCAGCCAAGTAGAATATTTTGTACTCATGTAAACTGTTAGTCCAAAGGAAGTGGCTAAATTTCTGTCGATTTTTCCTCCCATTTTATTAGTTTTTTGGATCTTTGGATTGCATATCAAGATTCGTGCAAAGAAACTGAGGTTCCACCTGTTTTGTTTTTTTATTCGAACCCCCTTTGTTACTGCGCCTCCTCCTTTTTGTTTTCTTTTCACCAGATGGAGAGAGGGGGGAAGCTACATGAGAGGAGAGGTGATGGGGGCGATTTCGTCGCCGGTAGATCCTGCAGCGGTGAGCTTCCTGATCCCTCCTGTCATTTTTGTGTTGATTTTGTCTTCCTTGTCCTCTGCAGGTTTCAGCAATCTATGACTGGAGGCCAGTGGTGTCGAGCTTGGCCAGGCTTTTGTCGGTGTAGCACTTCTTCTGTCTGTAAGGCCCCCCTAGCTTGTCGTCCCTTCTGAATCCAGTAGCTAGGTTTCACCGGTGCTCTAGTTCTTCCTTCTCATGCTTTGTTGTTTATATGCATTAGGGTGGTTATACAGGTTTTTAGTACGGTTCAATCCTCTTTTCGTTTTGTATGCTTATGGACTCTGTTAAATTTTTGTGGCTTAGAGATTACACTTTCAGTTGTGCTCCTGGCTATTTCACTCTTTCCCCTGCTTCATTTTTGTTTTGATGCATAATATTGTATGGTTAACATGCAAATGCAAAAAATCAACCAATAAATGGTCTATGTGTTTTTCTGCAATCATATATGCATTTGATTAGAGTTTTCTTTACCAGAGATGTGGGGTTGATTCATGATTCCCCCCTATACACAGATTAGGTACTTTCCCCCCCTTCATCTTTTCCAATTCCTGTTGCTCTTCCTCTTCCTTGTCTTCGTCCTCTCTTTTTTTACTGTTCCTCTTATTCCTGCTGATTTTTTCCTTTTTTTTTGTTTTCTAGCACCATGTTCTGAATTTTTATATCAGCTGATCTTTTAATATTCAAATAGATGTCCAGCATCAGTACCTTGCACAAAATTTCTCAATACATATTTTTCATTTTTTTGTGGTTTTATATCTGCTTCAGAAATAATGGTTTTACTATATTTCAACAACTCTAGTGGCAATCCCTTCGAATTCTACCTTTTATCTGAACCTGAATTTTGTTCAGTCGCAAACATGCTTCGACAATTTTCATGTTTTCTTGAGATGATGGTATATATTTATTTTACCTGCAATATTCAATCAAACATCTCACCCTTTTACTTCCTGATAACAATGTGAAGATAAATGCATTTCTCGAGTACATTAAAATGGGAGTGGCATTAGTTTTCAAGCATTATTCTATCAGACTGCAGTTCCTGAAAAAAAATGCTTGATTTGTGATTGCATCAGGTTTCCACATTAGAGATACCTAGCTTTAGATGAGCTCACCTCTGAAGTCAGCATGCTCAATCTTGAGCGTGCTAGGCAAATAAAGAGTCGACTGGTCGCTATATCTGGCATAGTTCACAAGGTCAGCTTGAGCATTATGGTATATACTACAAGTATATGTGAACATTTATACAATGATGATATGGTTTATTGTGACTTTGTGAGTAATTCTGAAGTGTCCGAGTGCTATTTCCATGAATCGTTTGACAGGTCAGGGATGAACTACAGTGCTAGCTAGATGACGACATCGACATGACAAAGCTCGCTTACCACTCAGCTGGCTGCCAGTCATCAAGATTTGACATCGAGAAAGAAGCAAGCGAGCTCGAAGATAGTAATAGGTATACTCCTACAAGACAAAAAAAAAAAAAAATCTTCCACAAGTTGATAAGTTGGTGCTTCATCCAACCATGGACATGACGTGTGCCTGAATGCAGCGCCAGGGAGGACGATGTTGATAAGTTGCAAACATGCTTCCACAATTTTCATGTTTTCTTGGGATGATAGCATACGGAGTATAAGCCTTCATTTTATATTTTTACCTACAATATTCAGTCAAGCATCTCACCCTTTTACTTACTGATAACAATGTAAAGATAGATGCATTGCTCGAGTACATTAAAATTGGAGTGGCATTAGTTTTGAAGCATTATTCCTG
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| CDS seq | ATGCGGCGCTTCTCCCCGGCCGCCGCGGCGCTGCTCCTCCGACGCTCGCTCGCCGCCGCCGCCGCCGCCGCCTCACCAGCGCTCCGCTCGGGTCCGAGACAGCTGGTGCGTGCCTCGCTTCTTGACGAAAGTTTGTCTACACAGACGAGTTCAGCGGCTTCAACCATGGCTGTGCAGTACCACCAATGGTCTAGTTCAGCAGACGGGGATGATGATGAGGTTCTTGAGGCTTTCAATCGGGACTGTTGTACCGATGCAGGTGCTGGTGTTTTGGATGATTCAGCATCTACTGCCTATGTTGAGAAGCTCTGCACATCAGGCAACCTCCCTGATGCTGTTCAGATTCTCCGACATTTACATGATAGGAAGATCCATGTAGGATTGGGTACGTTTAATTTGGTGCTGGAGCAAACAGGCGAAGTGAACAACTTCGTTCTTTTTGCCAAGGTGTTCAGGTACCTGCTGCTTTCCAAAATAGCTCCTGACTTGACTTCTTATACAAATGTTGCAAAGGCCCTTCAGAAGTTGGATGACTATGAACTAATACTTAAATTTGTGAGACAAGTTATGGAAATTACACATGATAGAGATCCTACAGTGATGAATCGCATTGTTTTCACCACGGCTAAATATGGACAGATTGATAAATGTTTGATCATATTTGAAGAACTGAAGAAAGATCAAAGAGGGTTAGATGTTGTCACATTCAATACCATTTTGGACATGCTTGGAAAGGCTGGTCGGGTGGATCAAATGCTTCAGGAGGTGAAGCTAATGGATGAACTTGGCCATTCTCCTGACATTGTTACATACAATACTGTAATAAACTGCTTGCGGAGGCTTGGAAGGTTAGATCAGTGCAAAATCTTCGCAAGAGAAATGGTTGAGAGAGGCATCGATCCAGATTTAAGAACATATACTGCACTGATTGATATTTTCGGGCGGGCTGGCCATATTACTGAAGCCCTTGAAATGTTTGACCAGATGAAAAGGTCACATCAACCTTCAATTTATGTCTACCGGGCCCTAATCAGTGACTTAAAGAAGGCTGGACAGTTTGAACTTGCACAAAAGTTATCTGAAGAGATGAAAACAAGTGCTTCAGAATTACTAGGCCCTGAAGATTTTAAACATAAGTTCAAGGGTAGAAAGATCAACAAGAACAAGTAA
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| Protein seq | MRRFSPAAAALLLRRSLAAAAAAASPALRSGPRQLVRASLLDESLSTQTSSAASTMAVQYHQWSSSADGDDDEVLEAFNRDCCTDAGAGVLDDSASTAYVEKLCTSGNLPDAVQILRHLHDRKIHVGLGTFNLVLEQTGEVNNFVLFAKVFRYLLLSKIAPDLTSYTNVAKALQKLDDYELILKFVRQVMEITHDRDPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIFGRAGHITEALEMFDQMKRSHQPSIYVYRALISDLKKAGQFELAQKLSEEMKTSASELLGPEDFKHKFKGRKINKNK |
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| Function | Pentatricopeptide repeat-containing protein At1g11900 [UniProtKB/Swiss-Prot:Q5BIV3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0481800 | OsNip_05t0481800-01 | Chr05 | 23692939 | 23695070 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGGCGCTTCTCCCCGGCCGCCGCGGCGCTGCTCCTCCGACGCTCGCTCGCCGCCGCCGCCGCCGCCGCCTCACCAGCGCTCCGCTCGGGTCCGAGACAGCTGGTGCGTGCCTCGCTTCTTGACGAAAGTTTGTCTACACAGACGAGTTCAGCGGCTTCAACCATGGCTGTGCAGTACCACCAATGGTCTAGTTCAGCAGACGGGGATGATGATGAGGTTCTTGAGGCTTTCAATCGGGACTGTTGTACCGATGCAGGTGCTGGTGTTTTGGATGATTCAGCATCTACTGCCTATGTTGAGAAGCTCTGCACATCAGGCAACCTCCCTGATGCTGTTCAGATTCTCCGACATTTACATGATAGGAAGATCCATGTAGGATTGGGTACGTTTAATTTGGTGCTGGAGCAAACAGGCGAAGTGAACAACTTCGTTCTTTTTGCCAAGGTGTTCAGGTACCTGCTGCTTTCCAAAATAGCTCCTGACTTGACTTCTTATACAAATGTTGCAAAGGCCCTTCAGAAGTTGGATGACTATGAACTAATACTTAAATTTGTGAGACAAGTTATGGAAATTACACATGATAGAGATCCTACAGTGATGAATCGCATTGTTTTCACCACGGCTAAATATGGACAGATTGATAAATGTTTGATCATATTTGAAGAACTGAAGAAAGATCAAAGAGGGTTAGATGTTGTCACATTCAATACCATTTTGGACATGCTTGGAAAGGCTGGTCGGGTGGATCAAATGCTTCAGGAGGTGAAGCTAATGGATGAACTTGGCCATTCTCCTGACATTGTTACATACAATACTGTAATAAACTGCTTGCGGAGGCTTGGAAGGTTAGATCAGTGCAAAATCTTCGCAAGAGAAATGGTTGAGAGAGGCATCGATCCAGATTTAAGAACATATACTGCACTGATTGATATTTTCGGGCGGGCTGGCCATATTACTGAAGCCCTTGAAATGTTTGACCAGATGAAAAGGTCACATCAACCTTCAATTTATGTCTACCGGGCCCTAATCAGTGACTTAAAGAAGGCTGGACAGTTTGAACTTGCACAAAAGTTATCTGAAGAGATGAAAACAAGTGCTTCAGAATTACTAGGCCCTGAAGATTTTAAACATAAGTTCAAGGGTAGAAAGATCAACAAGAACAAGTAA
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| Protein seq | MRRFSPAAAALLLRRSLAAAAAAASPALRSGPRQLVRASLLDESLSTQTSSAASTMAVQYHQWSSSADGDDDEVLEAFNRDCCTDAGAGVLDDSASTAYVEKLCTSGNLPDAVQILRHLHDRKIHVGLGTFNLVLEQTGEVNNFVLFAKVFRYLLLSKIAPDLTSYTNVAKALQKLDDYELILKFVRQVMEITHDRDPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIFGRAGHITEALEMFDQMKRSHQPSIYVYRALISDLKKAGQFELAQKLSEEMKTSASELLGPEDFKHKFKGRKINKNK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0481800 | OsNip_05t0481800-02 | Chr05 | 23692950 | 23697385 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGGCGCTTCTCCCCGGCCGCCGCGGCGCTGCTCCTCCGACGCTCGCTCGCCGCCGCCGCCGCCGCCGCCTCACCAGCGCTCCGCTCGGGTCCGAGACAGCTGGTGCGTGCCTCGCTTCTTGACGAAAGTTTGTCTACACAGACGAGTTCAGCGGCTTCAACCATGGCTGTGCAGTACCACCAATGGTCTAGTTCAGCAGACGGGGATGATGATGAGGTTCTTGAGGCTTTCAATCGGGACTGTTGTACCGATGCAGGTGCTGGTGTTTTGGATGATTCAGCATCTACTGCCTATGTTGAGAAGCTCTGCACATCAGGCAACCTCCCTGATGCTGTTCAGATTCTCCGACATTTACATGATAGGAAGATCCATGTAGGATTGGGTACGTTTAATTTGGTGCTGGAGCAAACAGGCGAAGTGAACAACTTCGTTCTTTTTGCCAAGGTGTTCAGGTACCTGCTGCTTTCCAAAATAGCTCCTGACTTGACTTCTTATACAAATGTTGCAAAGGCCCTTCAGAAGTTGGATGACTATGAACTAATACTTAAATTTGTGAGACAAGTTATGGAAATTACACATGATAGAGATCCTACAGTGATGAATCGCATTGTTTTCACCACGGCTAAATATGGACAGATTGATAAATGTTTGATCATATTTGAAGAACTGAAGAAAGATCAAAGAGGGTTAGATGTTGTCACATTCAATACCATTTTGGACATGCTTGGAAAGGCTGGTCGGGTGGATCAAATGCTTCAGGAGGTGAAGCTAATGGATGAACTTGGCCATTCTCCTGACATTGTTACATACAATACTGTAATAAACTGCTTGCGGAGGCTTGGAAGGTTAGATCAGTGCAAAATCTTCGCAAGAGAAATGGTTGAGAGAGGCATCGATCCAGATTTAAGAACATATACTGCACTGATTGATATTTTCGGGCGGGCTGGCCATATTACTGAAGCCCTTGAAATGTTTGACCAGATGAAAAGGTCACATCAACCTTCAATTTATGTCTACCGGGCCCTAATCAGTGACTTAAAGAAGGCTGGACAGTTTGAACTTGCACAAAAGTTATCTGAAGAGATGAAAACAAGTGCTTCAGAATTACTAGGCCCTGAAGATTTTAAACATAAGTTCAAGGGTAGAAAGATCAACAAGAACAAGTAA
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| Protein seq | MRRFSPAAAALLLRRSLAAAAAAASPALRSGPRQLVRASLLDESLSTQTSSAASTMAVQYHQWSSSADGDDDEVLEAFNRDCCTDAGAGVLDDSASTAYVEKLCTSGNLPDAVQILRHLHDRKIHVGLGTFNLVLEQTGEVNNFVLFAKVFRYLLLSKIAPDLTSYTNVAKALQKLDDYELILKFVRQVMEITHDRDPTVMNRIVFTTAKYGQIDKCLIIFEELKKDQRGLDVVTFNTILDMLGKAGRVDQMLQEVKLMDELGHSPDIVTYNTVINCLRRLGRLDQCKIFAREMVERGIDPDLRTYTALIDIFGRAGHITEALEMFDQMKRSHQPSIYVYRALISDLKKAGQFELAQKLSEEMKTSASELLGPEDFKHKFKGRKINKNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.865816 | 0.956691 | 0.703383 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0852900 | RBH | 0.219780 | 0.653492 | 1.030767 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40320 | RBH | 0.560317 | 0.541125 | 0.173273 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0481800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021170 | RBH | 0.201950 | 0.930872 | 1.078692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021130 | RBH | 0.134302 | 0.558531 | 0.508345 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021020 | RBH | 0.298685 | 0.790588 | 2.688075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021040 | RBH | 0.110480 | 0.041780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021120 | RBH | 1.496999 | 4.881203 | 3.500338 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0366600 | RBH | 1.5444945 | 4.7563695 | 6.7364 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020700 | RBH | 0.187165 | 0.0 | 0.528321 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0376800 | RBH | 1.915354 | 4.0328795 | 10.158333 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020950 | RBH | 0.037547 | 0.249817 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020930 | RBH | 0.235864 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021000 | RBH | 0.835957 | 4.473958 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021060 | RBH | 0.130820 | 0.423576 | 0.241291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021080 | RBH | 0.051203 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020510 | RBH | 0.228899 | 0.569899 | 0.365464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020950 | RBH | 0.160124 | 1.858575 | 1.253116 |
