Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0457600 | OGI:05061160 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:22464519-22466117 | ||||||||
| Gene Symbol | DUF668-9, OsDUF668-9 | ||||||||||
| DNA seq | CGAGCCGAGGTGAGGTGTGTCCATGGTGGTTACCAAGATGCGGTGGGCAGACGACGGCGGCGAAGGCGACGACGACGACGATCTCCGGCTGCCGGGCGCCGGGAGGCGTTCGCCGTCGCTCGGCATCCTGGCGTTCGAGGCGGCGTCCACGATGACGAAGCTCCTGTCGCTGCACCGGTCGCTGTCGGAGAAGGAGGTGGCGAGGCTGCGGTCGAACACCATGCGGGCGGCCGGCGTGGAGTACCTTAGCTCGACCGACCAGGCGTTCCTGCTCCGGCTGGCCTGCGCCGAGGCGGTGGCGGCGCTGGACGCCGCGGCGGCGGCGGTCGCGCGGCTCGGCGCGCGGTGCGGGCTCGACTTCGCCGGGCCGTACGCGAGCCTCAAGGCCGGCGCGCCCGACGCGCGGCTGGACCAGTTCGTGGCGAAGGGGCTCAAGGTGAAGGCCAAGAGGATGGAGCGGCTCGTCGCCGCCACGGCGAAGCTCTGCGCCGAGATGGAGGCGCTCGACAAGCTCGAGGCGGCGGAGCAGAAGCTCGCCCGACGTGGGTGGGGCCGCCTCAGCGTGCCGATCCCCTCGCCGGCCGCCGCCGCCGTCGACGCGGTGGGCTCCGACTCGCTCCGGCTGGGTATCAGGGCGCAGCGCGCCAGAGTGCGGCGGCTCAAGGAGGAATCGCTCTGGAGCCAGAGCTACGAGAAGGCCGTCATCCTCATGGCCCGCGCCGCCTGCGCGGTGTTCGTCCGCGTCTGCGTCGTCTTCGGCGCCCACGTCCCCGGCCTGCCCCCGCCGCTCCCTCCCGCCGAAGCCGTCCACAGCCGCCTCTCCAAGCTTCTGCTCCACCCAATGTCGGCGGCGGCGCAGCCCAGGTCGTTGTCAGGGCCCATCCAACGTCGAGACGTGCCGCTGCGCATCGAGATGAGCAGCAACTCGTGCCCGATCATACGCTCGCATTGCCAGCAGCCATGGCAGACGTCGCCGCCGGGCGTCGACTGGAGGAAGCTCCTCGAGCCGCCGCCGGGCACGGTGGGCGGCGCGGGGCTGGACCTGCAGTACGCGAACGTGATCACCACCGCGGAGCGGCTGCTGCTGGAGACGGACCACGCCGAGGGGCGGCAGCGCCACGAGGAGGCGCGCGCCGAGCTGTACGCGATGCTGCCGTCGAAGCTGCGTGCGGCCGTGCGGGCGAAGCTGCGTGGATGGTGGAGGGAGCGCGGCGCCGCGGCGGCGGTGGCGGTGGAGCTGGACGCGGGGCTCGCGGAGGGGTGGAGGTCGGCGGCGGGGCGCATCCTGGCGTGGCTGGCGCCGATGGCGCGGGACACGGCGCGGTGGCACGCGGAGCGGAGCCTGGACAGGCAGCGGCGGTTCGAGGTGGGCGGCGGCGGCGGCGGCAGCGCGCGGGCGTGGGCGCTGCAGACGCTGCGGTGGGCCGACGCGGAGAAGGCGGAGGCGGCGGTGGTGGAGGTGCTCGTCGCGCTCAGCTGCGTCGGCTGGTACGACGAGCGGCGGCGGGTCGCGTCGCTCCGTTTCTGAGCTAGCCGCCTCTTTGGCTTCCACGCCGGTGGCCTCGCCGCAACGGCGCAGCACCGGCAACGGCACGTAGG
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| CDS seq | ATGGTGGTTACCAAGATGCGGTGGGCAGACGACGGCGGCGAAGGCGACGACGACGACGATCTCCGGCTGCCGGGCGCCGGGAGGCGTTCGCCGTCGCTCGGCATCCTGGCGTTCGAGGCGGCGTCCACGATGACGAAGCTCCTGTCGCTGCACCGGTCGCTGTCGGAGAAGGAGGTGGCGAGGCTGCGGTCGAACACCATGCGGGCGGCCGGCGTGGAGTACCTTAGCTCGACCGACCAGGCGTTCCTGCTCCGGCTGGCCTGCGCCGAGGCGGTGGCGGCGCTGGACGCCGCGGCGGCGGCGGTCGCGCGGCTCGGCGCGCGGTGCGGGCTCGACTTCGCCGGGCCGTACGCGAGCCTCAAGGCCGGCGCGCCCGACGCGCGGCTGGACCAGTTCGTGGCGAAGGGGCTCAAGGTGAAGGCCAAGAGGATGGAGCGGCTCGTCGCCGCCACGGCGAAGCTCTGCGCCGAGATGGAGGCGCTCGACAAGCTCGAGGCGGCGGAGCAGAAGCTCGCCCGACGTGGGTGGGGCCGCCTCAGCGTGCCGATCCCCTCGCCGGCCGCCGCCGCCGTCGACGCGGTGGGCTCCGACTCGCTCCGGCTGGGTATCAGGGCGCAGCGCGCCAGAGTGCGGCGGCTCAAGGAGGAATCGCTCTGGAGCCAGAGCTACGAGAAGGCCGTCATCCTCATGGCCCGCGCCGCCTGCGCGGTGTTCGTCCGCGTCTGCGTCGTCTTCGGCGCCCACGTCCCCGGCCTGCCCCCGCCGCTCCCTCCCGCCGAAGCCGTCCACAGCCGCCTCTCCAAGCTTCTGCTCCACCCAATGTCGGCGGCGGCGCAGCCCAGGTCGTTGTCAGGGCCCATCCAACGTCGAGACGTGCCGCTGCGCATCGAGATGAGCAGCAACTCGTGCCCGATCATACGCTCGCATTGCCAGCAGCCATGGCAGACGTCGCCGCCGGGCGTCGACTGGAGGAAGCTCCTCGAGCCGCCGCCGGGCACGGTGGGCGGCGCGGGGCTGGACCTGCAGTACGCGAACGTGATCACCACCGCGGAGCGGCTGCTGCTGGAGACGGACCACGCCGAGGGGCGGCAGCGCCACGAGGAGGCGCGCGCCGAGCTGTACGCGATGCTGCCGTCGAAGCTGCGTGCGGCCGTGCGGGCGAAGCTGCGTGGATGGTGGAGGGAGCGCGGCGCCGCGGCGGCGGTGGCGGTGGAGCTGGACGCGGGGCTCGCGGAGGGGTGGAGGTCGGCGGCGGGGCGCATCCTGGCGTGGCTGGCGCCGATGGCGCGGGACACGGCGCGGTGGCACGCGGAGCGGAGCCTGGACAGGCAGCGGCGGTTCGAGGTGGGCGGCGGCGGCGGCGGCAGCGCGCGGGCGTGGGCGCTGCAGACGCTGCGGTGGGCCGACGCGGAGAAGGCGGAGGCGGCGGTGGTGGAGGTGCTCGTCGCGCTCAGCTGCGTCGGCTGGTACGACGAGCGGCGGCGGGTCGCGTCGCTCCGTTTCTGA
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| Protein seq | MVVTKMRWADDGGEGDDDDDLRLPGAGRRSPSLGILAFEAASTMTKLLSLHRSLSEKEVARLRSNTMRAAGVEYLSSTDQAFLLRLACAEAVAALDAAAAAVARLGARCGLDFAGPYASLKAGAPDARLDQFVAKGLKVKAKRMERLVAATAKLCAEMEALDKLEAAEQKLARRGWGRLSVPIPSPAAAAVDAVGSDSLRLGIRAQRARVRRLKEESLWSQSYEKAVILMARAACAVFVRVCVVFGAHVPGLPPPLPPAEAVHSRLSKLLLHPMSAAAQPRSLSGPIQRRDVPLRIEMSSNSCPIIRSHCQQPWQTSPPGVDWRKLLEPPPGTVGGAGLDLQYANVITTAERLLLETDHAEGRQRHEEARAELYAMLPSKLRAAVRAKLRGWWRERGAAAAVAVELDAGLAEGWRSAAGRILAWLAPMARDTARWHAERSLDRQRRFEVGGGGGGSARAWALQTLRWADAEKAEAAVVEVLVALSCVGWYDERRRVASLRF |
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| Function | Protein PSK SIMULATOR 1 [UniProtKB/Swiss-Prot:Q9XID5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0457600 | OsNip_05t0457600-00 | Chr05 | 22464519 | 22466117 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGGTTACCAAGATGCGGTGGGCAGACGACGGCGGCGAAGGCGACGACGACGACGATCTCCGGCTGCCGGGCGCCGGGAGGCGTTCGCCGTCGCTCGGCATCCTGGCGTTCGAGGCGGCGTCCACGATGACGAAGCTCCTGTCGCTGCACCGGTCGCTGTCGGAGAAGGAGGTGGCGAGGCTGCGGTCGAACACCATGCGGGCGGCCGGCGTGGAGTACCTTAGCTCGACCGACCAGGCGTTCCTGCTCCGGCTGGCCTGCGCCGAGGCGGTGGCGGCGCTGGACGCCGCGGCGGCGGCGGTCGCGCGGCTCGGCGCGCGGTGCGGGCTCGACTTCGCCGGGCCGTACGCGAGCCTCAAGGCCGGCGCGCCCGACGCGCGGCTGGACCAGTTCGTGGCGAAGGGGCTCAAGGTGAAGGCCAAGAGGATGGAGCGGCTCGTCGCCGCCACGGCGAAGCTCTGCGCCGAGATGGAGGCGCTCGACAAGCTCGAGGCGGCGGAGCAGAAGCTCGCCCGACGTGGGTGGGGCCGCCTCAGCGTGCCGATCCCCTCGCCGGCCGCCGCCGCCGTCGACGCGGTGGGCTCCGACTCGCTCCGGCTGGGTATCAGGGCGCAGCGCGCCAGAGTGCGGCGGCTCAAGGAGGAATCGCTCTGGAGCCAGAGCTACGAGAAGGCCGTCATCCTCATGGCCCGCGCCGCCTGCGCGGTGTTCGTCCGCGTCTGCGTCGTCTTCGGCGCCCACGTCCCCGGCCTGCCCCCGCCGCTCCCTCCCGCCGAAGCCGTCCACAGCCGCCTCTCCAAGCTTCTGCTCCACCCAATGTCGGCGGCGGCGCAGCCCAGGTCGTTGTCAGGGCCCATCCAACGTCGAGACGTGCCGCTGCGCATCGAGATGAGCAGCAACTCGTGCCCGATCATACGCTCGCATTGCCAGCAGCCATGGCAGACGTCGCCGCCGGGCGTCGACTGGAGGAAGCTCCTCGAGCCGCCGCCGGGCACGGTGGGCGGCGCGGGGCTGGACCTGCAGTACGCGAACGTGATCACCACCGCGGAGCGGCTGCTGCTGGAGACGGACCACGCCGAGGGGCGGCAGCGCCACGAGGAGGCGCGCGCCGAGCTGTACGCGATGCTGCCGTCGAAGCTGCGTGCGGCCGTGCGGGCGAAGCTGCGTGGATGGTGGAGGGAGCGCGGCGCCGCGGCGGCGGTGGCGGTGGAGCTGGACGCGGGGCTCGCGGAGGGGTGGAGGTCGGCGGCGGGGCGCATCCTGGCGTGGCTGGCGCCGATGGCGCGGGACACGGCGCGGTGGCACGCGGAGCGGAGCCTGGACAGGCAGCGGCGGTTCGAGGTGGGCGGCGGCGGCGGCGGCAGCGCGCGGGCGTGGGCGCTGCAGACGCTGCGGTGGGCCGACGCGGAGAAGGCGGAGGCGGCGGTGGTGGAGGTGCTCGTCGCGCTCAGCTGCGTCGGCTGGTACGACGAGCGGCGGCGGGTCGCGTCGCTCCGTTTCTGA
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| Protein seq | MVVTKMRWADDGGEGDDDDDLRLPGAGRRSPSLGILAFEAASTMTKLLSLHRSLSEKEVARLRSNTMRAAGVEYLSSTDQAFLLRLACAEAVAALDAAAAAVARLGARCGLDFAGPYASLKAGAPDARLDQFVAKGLKVKAKRMERLVAATAKLCAEMEALDKLEAAEQKLARRGWGRLSVPIPSPAAAAVDAVGSDSLRLGIRAQRARVRRLKEESLWSQSYEKAVILMARAACAVFVRVCVVFGAHVPGLPPPLPPAEAVHSRLSKLLLHPMSAAAQPRSLSGPIQRRDVPLRIEMSSNSCPIIRSHCQQPWQTSPPGVDWRKLLEPPPGTVGGAGLDLQYANVITTAERLLLETDHAEGRQRHEEARAELYAMLPSKLRAAVRAKLRGWWRERGAAAAVAVELDAGLAEGWRSAAGRILAWLAPMARDTARWHAERSLDRQRRFEVGGGGGGSARAWALQTLRWADAEKAEAAVVEVLVALSCVGWYDERRRVASLRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0845100 | RBH | 0.574726 | 0.117489 | 0.702349 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38320 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0457600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019490 | RBH | 0.0 | 0.019584 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019620 | RBH | 0.0 | 2.299042 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0347400 | RBH | 0.0340845 | 0.5494795 | 0.027031 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019210 | RBH | 0.0 | 0.107146 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0357500 | RBH | 0.113096 | 0.079704 | 0.0607145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019490 | RBH | 1.573636 | 4.469337 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019590 | RBH | 0.0 | 0.0 | 0.153781 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019440 | RBH | 0.0 | 2.251132 | 0.0 |
