Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0845100 | OGI:01108300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:36296563-36298686 | ||||||||
| Gene Symbol | DUF668-1, OsDUF668-1 | ||||||||||
| DNA seq | TCCTGCTTGAACAAAACAAGCTTCAAAGAATCAATCGTGTATATTGTACAAATTTCCTGTAACACGTCTTACACACCGGACTCCGTCACCAGTGTGAGGCCGACACGCGGGCCCGGCATGTCAGCCTCAGACCACTGACTGTCGCCACACACAAACCAACCAATCAAACTCTCCTCCATCGTTTTTTACTTTTCTTTCTCCCTCCAACCTTTCAAACTATTACTGTTACTGCTACTACTCTAACCCGTTGAATAGTTCACCGGTTCTAACCTGATCTACCAACCCCCTCCCTCCCAAAAAGAAAACAAAAAAAATCAACTCTTTCAATCAAAGCATTGACAAATGAAGCGAGGAAGAGGAAGAGGAAGAAGGAAGAAGGAGAAAAGCCAAAGGTAGAATCTTTGGGCAAAAGTTTCCCGCGTGTTGAATGGTTGAACGGTTCAATGGATGGATTCAGAGGAGGCGGACGGAGCCGCGCCGCCGCTCCTCGTACCAGCAGACGCAGCTGAGCGCGACGAGCACCTCGACGAGCGCCGCCTCGGCCTTCTCCTTGTCCGCCCACCGGAGCGTCTGCAGCGCGTACACCCGCGCCCCGCCGTCGAACCGCCGCGTCCGGTCCATGTTCCGCTCCGCCTGCCACTGCACCGTGTCGCGCGCCATCGGCCCCAGCCACGCCATGATCCGGTCCACCGCGTCCTTCCACCCCTGCGCCAGCCCGGCGTCCAGCGGCCCCGGGTCCCGCCACCAGTCGCGCAGCTTGGACCGCACCGCCGCCCTGAGCTTCGCCGGCAGCATCTCGTACATCTCGGCGCGCTCCGCGTTCGCTTCCTCCTGCCGCCCCTCGGCCTCCATCTGCAGCAGCTGCTCCGCGGACACGATCACGTTCGCGTACTGCTGGTCCAGCCCCGCGCCGCCCACCGTGCTGGCCGGCGCGTCCAGGAGCTTGCGCCAGTCGATGGCGGCCTTCTGCCCGGACGGCCTCAGCCCGATGATCGGGCACGAGCTGCTGATCACCGGCGGGTGGACTCGCGACGGCCCGTCTCGCCGCGTGATCGGCCCGGACGACGCCTTCGCCCTGACCGCCCGCGGGTTGAGCAGCTTGGACAGCCTTGTCTGGACGCTGTCGGTGGCGGCCGACGGCAGCGGCGGCGGGAGGCCGGGGACGAACGCGCCGAAGATGGTACAGATGCGGCTGAACACGGCGCACGCGGCGCGCGCCATGAGGCCGACGGCCTTCTCGTAGCTCTGGTTCCAGAGGGACTCCTCCTTGAGGCGACGCACCTTGATCCTCTGCGCCTTGAGATCCTGCTGGAGCGAGTCGGCGCCGGGGGAATCGCCGGCGGCCGACGGGGCCACCGGCTGCATCGGGATCGGCCCGCTCAGGCGGTTCCACCCGCGGAACGCGAGCTTCCGCTCGCTGGCCTCCAGCTCGTCGAGCGCCTCCATTTCGGAGCACAGCCTGGCCGTGGACGCGACGAGCCGCTCCATCTTCTTGGCCTTCACCCTGAGGCCCTTGGCGACGAGCGGGTCGAGCCTCGCGTCGGGCGCCCCGGCCTTGAGGCTCGCGTACACGCCGCCGAAGTCGATCCCGCACCTCAGCCCGAGCCGCGCGACGGCGGCCGCGGCGGCGTCCAGCGACACGACGAGCTCGGCGCAGGCCAGCCTGAGGAGGAACGCCTGGTCGGTGGAGTTGAGGTACGCGACGCCGGGCGACCGCATCGTGTCGGACCGGAGCCTGGACACCTCCTGCTCCGACAGCGACCGGTGCAGCGACAGCAGCTTCGACATCGCCGCCGCGGCCTCGAACGCGAGGATCCCAAGCGCTGCCTGTGGCCCCGACGGCAGCCGGAGATCCACGGGCATCCACATCTTCTGCACAACCATCAATACTTCTCTCCAAATCTCGCAACAACACAGAGCATGGAGCGATCGATCGAGCTAAGCTTCTTTTTCTTCTCCTCTCTCTCTCTCTCTCTCTCGTTAAGGCGTCGACCTCGTTGAATCGATCAGATCACCTCAGCACATCGACGCGACGCGGTTGCAGGTACGGGTTTCGGTTGGGCTGGTATGGTGGCAATCTCTTTATATATAGCACGAGTTATTCTCACTTCTCTTGCCGGAGGG
More
|
||||||||||
| CDS seq | ATGGTTGTGCAGAAGATGTGGATGCCCGTGGATCTCCGGTCGCTCCAGCAGGATCTCAAGGCGCAGAGGATCAAGGTGCGTCGCCTCAAGGAGGAGTCCCTCTGGAACCAGAGCTACGAGAAGGCCGTCGGCCTCATGGCGCGCGCCGCGTGCGCCGTGTTCAGCCGCATCTGTACCATCTTCGGCGCGTTCGTCCCCGGCCTCCCGCCGCCGCTGCCGTCGGCCGCCACCGACAGCGTCCAGACAAGGCTGTCCAAGCTGCTCAACCCGCGGGCGGTCAGGGCGAAGGCGTCGTCCGGGCCGATCACGCGGCGAGACGGGCCGTCGCGAGTCCACCCGCCGGTGATCAGCAGCTCGTGCCCGATCATCGGGCTGAGGCCGTCCGGGCAGAAGGCCGCCATCGACTGGCGCAAGCTCCTGGACGCGCCGGCCAGCACGGTGGGCGGCGCGGGGCTGGACCAGCAGTACGCGAACGTGATCGTGTCCGCGGAGCAGCTGCTGCAGATGGAGGCCGAGGGGCGGCAGGAGGAAGCGAACGCGGAGCGCGCCGAGATGTACGAGATGCTGCCGGCGAAGCTCAGGGCGGCGGTGCGGTCCAAGCTGCGCGACTGGTGGCGGGACCCGGGGCCGCTGGACGCCGGGCTGGCGCAGGGGTGGAAGGACGCGGTGGACCGGATCATGGCGTGGCTGGGGCCGATGGCGCGCGACACGGTGCAGTGGCAGGCGGAGCGGAACATGGACCGGACGCGGCGGTTCGACGGCGGGGCGCGGGTGTACGCGCTGCAGACGCTCCGGTGGGCGGACAAGGAGAAGGCCGAGGCGGCGCTCGTCGAGGTGCTCGTCGCGCTCAGCTGCGTCTGCTGGTACGAGGAGCGGCGGCGCGGCTCCGTCCGCCTCCTCTGA
More
|
||||||||||
| Protein seq | MVVQKMWMPVDLRSLQQDLKAQRIKVRRLKEESLWNQSYEKAVGLMARAACAVFSRICTIFGAFVPGLPPPLPSAATDSVQTRLSKLLNPRAVRAKASSGPITRRDGPSRVHPPVISSSCPIIGLRPSGQKAAIDWRKLLDAPASTVGGAGLDQQYANVIVSAEQLLQMEAEGRQEEANAERAEMYEMLPAKLRAAVRSKLRDWWRDPGPLDAGLAQGWKDAVDRIMAWLGPMARDTVQWQAERNMDRTRRFDGGARVYALQTLRWADKEKAEAALVEVLVALSCVCWYEERRRGSVRLL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0845100 | OsNip_01t0845100-01 | Chr01 | 36296586 | 36298621 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTTGTGCAGAAGATGTGGATGCCCGTGGATCTCCGGTCGCTCCAGCAGGATCTCAAGGCGCAGAGGATCAAGGTGCGTCGCCTCAAGGAGGAGTCCCTCTGGAACCAGAGCTACGAGAAGGCCGTCGGCCTCATGGCGCGCGCCGCGTGCGCCGTGTTCAGCCGCATCTGTACCATCTTCGGCGCGTTCGTCCCCGGCCTCCCGCCGCCGCTGCCGTCGGCCGCCACCGACAGCGTCCAGACAAGGCTGTCCAAGCTGCTCAACCCGCGGGCGGTCAGGGCGAAGGCGTCGTCCGGGCCGATCACGCGGCGAGACGGGCCGTCGCGAGTCCACCCGCCGGTGATCAGCAGCTCGTGCCCGATCATCGGGCTGAGGCCGTCCGGGCAGAAGGCCGCCATCGACTGGCGCAAGCTCCTGGACGCGCCGGCCAGCACGGTGGGCGGCGCGGGGCTGGACCAGCAGTACGCGAACGTGATCGTGTCCGCGGAGCAGCTGCTGCAGATGGAGGCCGAGGGGCGGCAGGAGGAAGCGAACGCGGAGCGCGCCGAGATGTACGAGATGCTGCCGGCGAAGCTCAGGGCGGCGGTGCGGTCCAAGCTGCGCGACTGGTGGCGGGACCCGGGGCCGCTGGACGCCGGGCTGGCGCAGGGGTGGAAGGACGCGGTGGACCGGATCATGGCGTGGCTGGGGCCGATGGCGCGCGACACGGTGCAGTGGCAGGCGGAGCGGAACATGGACCGGACGCGGCGGTTCGACGGCGGGGCGCGGGTGTACGCGCTGCAGACGCTCCGGTGGGCGGACAAGGAGAAGGCCGAGGCGGCGCTCGTCGAGGTGCTCGTCGCGCTCAGCTGCGTCTGCTGGTACGAGGAGCGGCGGCGCGGCTCCGTCCGCCTCCTCTGA
More
|
|||||||
| Protein seq | MVVQKMWMPVDLRSLQQDLKAQRIKVRRLKEESLWNQSYEKAVGLMARAACAVFSRICTIFGAFVPGLPPPLPSAATDSVQTRLSKLLNPRAVRAKASSGPITRRDGPSRVHPPVISSSCPIIGLRPSGQKAAIDWRKLLDAPASTVGGAGLDQQYANVIVSAEQLLQMEAEGRQEEANAERAEMYEMLPAKLRAAVRSKLRDWWRDPGPLDAGLAQGWKDAVDRIMAWLGPMARDTVQWQAERNMDRTRRFDGGARVYALQTLRWADKEKAEAALVEVLVALSCVCWYEERRRGSVRLL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0845100 | OsNip_01t0845100-02 | Chr01 | 36296563 | 36298686 | - | IsoSeq | ||
| CDS seq | CCTCCGGCAAGAGAAGTGAGAATAACTCGTGCTATATATAAAGAGATTGCCACCATACCAGCCCAACCGAAACCCGTACCTGCAACCGCGTCGCGTCGATGTGCTGAGGTG |
|||||||
| Protein seq | PPAREVRITRAIYKEIATIPAQPKPVPATASRRCAEV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.574726 | 0.117489 | 0.702349 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0457600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62670 | RBH | 0.000000 | 0.000000 | 0.248072 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0845100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040090 | RBH | 0.0 | 2.348661 | 0.308317 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0039550 | RBH | 0.0 | 2.622484 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0039960 | RBH | 0.257425 | 2.008029 | 0.734466 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039420 | RBH | 0.0 | 0.106616 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039040 | RBH | 0.0 | 3.298816 | 0.655285 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0599800 | RBH | 0.770801 | 32.1283875 | 3.380335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0038730 | RBH | 0.0 | 0.322487 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0597400 | RBH | 0.8942505 | 55.426714 | 0.263265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039080 | RBH | 0.086491 | 0.106135 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039020 | RBH | 0.129793 | 2.684882 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039250 | RBH | 0.0 | 14.898027 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039250 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G039580 | RBH | 0.0 | 0.869430 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039260 | RBH | 0.0 | 3.852510 | 0.768769 |
