Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0428400 | OGI:05056670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:21006679-21009695 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAATACAAATTGTAGAGTGCTTACTACTTTATGCACCATACCGTCCCTGCTCAAACAAACAAGCAGACACGCAGAGAACAGCACAGGATTACAGGGAGAGCGGGGTCAGCTTTTTTGGCTTCTTTACAACAGCAAAGTGAGAGGCTACAGCTAACCAAAGAGGGATAGAATCAAAGAACACACACAACACACCATCACACTGTCAAACACACATGCATATGCACACATACATACACACAGACAGCACACATGGGCTTTGGGGATCAAGTTATTGGTGTAGTTACTAGTCACTGAACTTATTGATCTCTTCTTGTAGAAGTAGGAGAGAAGCTCGCCTTTGGCAGTAAAAATTTGTCAAGCCAGCAGCCAGAAGTTCTTCTGCCACCGGGTGCTGATGAGGTAGCCGCCGACGCCCTTGCTCTGCCGCCTCACCGCCAGCGTCAGGCAGTCCGCCCTGTTGATGCACTCCTCCACGAACTCCTCGCCGCTGCTCCTCATGAAGCTGCATTTCAAGCACACAGGGAACAAACAACAGAAAATTTTCTTTAATCTCAACAAGGACTATAGCAGGTGCACACAGCGTGGCTGCGTGGCCAGTTTTGAGTTCATTTGCACTTGGTGAAAAGGTAACTTTCCCTGAGAAACTTTTCACTTTTCAGAGTAACTTTGAAAGGTTTTCGTGGAGTTTTTAAAACTTCAGATGTCTACTACTACTACATAGTAGTACGACAGCAGCAGCAACTCAAGCAGTGGTCAGGGCCTCAGTGATACACTACCACACAGTACTATTATCATGGTTCTTGCTGCTTGATTCATTTAGGAGAGTTTAAGCTGCCTGGAAGGACATCTTTGACTACTACGAAAGGCATCTGTGATTTAAGGATGGTATTGGCACATGGCTCTTGCTGTTGATGAGTTTTCACACAAAAGGCAGTGACCCCATTCCTGGCCTACTTACTGATAAAGTTTCTTCCCAAAATTTCCTGACTATACCAAATAGTGTGATCCTATATTTGTACATTTTAGAAACACAACTTAAGCTGTTAAAATATTACTCTGAGGAACCTTCAGACATGACCAGCTATTAAAGTACTAACATTTTGCTTATAAAGAAACAAGGGACTTGACAGTGCGATGGGCTGTGCTACTGTGCCAGCTATGTAAAGATTCTCTCTCTTTCACCTTTGTGCAGAACTACTATTCTGTGGGCATAGATGAGGGATTGTGATGCATGCATGCATATGCTTAGATGTAGTAGTACAAGCTTTACCAGCAGAAAGGAGATGGCTTGCATTGGCTCAGCACCAGCACAGATGCATCCAGCTTCTTCACCTGGCTGAGGACGGTGCCCAGCTTGGGCCCTTGGATCACAAGCGCCTCAACCTCCACCTAACATTCATCCAAACCAGCTTTGTAAACATTGCAGAGTACAGTGAGAATGTGAGATAACCGTGATGGATGAGCCCTCCGTTTTCACGGGCAAAAAGACGAGGAACAGTGCATGCATCCTCTGCTAAACAAAACAAAGACAAGTACATTCACGAATAAAAAAAATGGAGATGTGAAGTACACTGGGATGCTGGTTTTTTTATTCGTGCAACAGGGTTACAAGGTCACAAATGTTGAGTTCTTTACATTTTAGCCCCAGAAAAGGACACGGATTTTGCATTAAAACCCTTTTGAAATGCTTCTGAACAACTTTTGGTGCAGTCCTTAAAGGCCATCAAATTTTTGAGAATTTGACTATGGTTATGAGAGCATCTAGATGGGAGCCCCACGATTTTTTCTTTATCTTGCTTTTATGAAGTTGAGGCCTTTTAGGCTTTAGCTTTAAGTCTGCCATGATCCATCAATGAAAAGTTGGCTATGATTCTTTTTCCATGAATGTTCTGATCTGATCTACTCCATCTACCTTGCATAACTCTTGGCTCCAGGTTGCCCAAGAACCAAATGCACATGTGAAAAAGAGCAACAAAAAACAACCGAAGTTCTCTTAATATATGCTTAATGAGAACAACAGAGTACTTTCTTGAAAGCGAGGAGAACCATAACCTACAACCAGTTCACTTGTTACAGTGTCAATTAAACCAAACTTTTGCCATTCATAGTTCATACACTGTATGACTTATATGTTCCTGAGCAAACTAGAACGCCCTTTACTGTAGTCTGCCACTTATAAGCTCGGAATGCAAAAATGTAAAGCACCTCGCCGTAATTATATTAAGTGAGTGACAAGCTCAGAATGGCAACCTCAGTGTGTCACTCAAGTTCAAAATGATAAGCACAGTGTGCCACCTCAGAAGTCAGAATGACAAGTATAGGAGAACAAGAAACATATCACATTGTGCAATTCATAAGTTGAAAAAAAAACAGTGCAGTTCTACACGATCAATGAACCAAAAACACTAGAAATTGAAGTGCTCATTCCTAAAAAAAATTAATATTTGGGCTTGCATGATTAGAAAGCTGGGTAGCTTTAAGCACGCACCTCGGGCTTGCAGGCCTTGCAGAGTGAGCCGAGGGAGTTGGCGAGCGCGGAGGCGTCGCCGCCGCCGTGGGGGAGGACGTGGAGCAGGGTGAGGAAGTCCCCCTTGCTGGCGACGTGGGTGAGCGCCCACATCATGGCGTGCTTGGCACCGGAGCTCTGGTCCACCACCACCATCACCCGCTTCCTCCCCGCGGGGGCCTCCTCCCTGCTCCTGCAGAGCCCGCCGCCGCCGCCTCCGCCCCCGCCGCGGCGGTGGTGCCCCCTCGCCTTCTTCCTGGACCACCGCCTCGACCCCCTCCTGCCGCACTCGGCCGCCGCCCACTCCTCGCCCAGCTCACGCGGCAGCGGTGCGCCGTCGCTCGCGCTGAACTGGCGCAGGAAGTGCTCGCTGCTGCCACCGCTGCTCCCCATCGGCGATCTCCTCCCCCTCCTCTCGATCCAGTGGCGTGGTGCACTGCTCGGCGCGTCGCGTCGCGGTGCTTGCTGCTAGCCGCTGCCGCTGCCGCGCTCGTGTGTTTGGGCTTCTGG
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| CDS seq | ATGGGGAGCAGCGGTGGCAGCAGCGAGCACTTCCTGCGCCAGTTCAGCGCGAGCGACGGCGCACCGCTGCCGCGTGAGCTGGGCGAGGAGTGGGCGGCGGCCGAGTGCGGCAGGAGGGGGTCGAGGCGGTGGTCCAGGAAGAAGGCGAGGGGGCACCACCGCCGCGGCGGGGGCGGAGGCGGCGGCGGCGGGCTCTGCAGGAGCAGGGAGGAGGCCCCCGCGGGGAGGAAGCGGGTGATGGTGGTGGTGGACCAGAGCTCCGGTGCCAAGCACGCCATGATGTGGGCGCTCACCCACGTCGCCAGCAAGGGGGACTTCCTCACCCTGCTCCACGTCCTCCCCCACGGCGGCGGCGACGCCTCCGCGCTCGCCAACTCCCTCGGCTCACTCTGCAAGGCCTGCAAGCCCGAGGTGGAGGTTGAGGCGCTTGTGATCCAAGGGCCCAAGCTGGGCACCGTCCTCAGCCAGGTGAAGAAGCTGGATGCATCTGTGCTGGTGCTGAGCCAATGCAAGCCATCTCCTTTCTGCTGCTTCATGAGGAGCAGCGGCGAGGAGTTCGTGGAGGAGTGCATCAACAGGGCGGACTGCCTGACGCTGGCGGTGAGGCGGCAGAGCAAGGGCGTCGGCGGCTACCTCATCAGCACCCGGTGGCAGAAGAACTTCTGGCTGCTGGCTTGA
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| Protein seq | MGSSGGSSEHFLRQFSASDGAPLPRELGEEWAAAECGRRGSRRWSRKKARGHHRRGGGGGGGGGLCRSREEAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGGGDASALANSLGSLCKACKPEVEVEALVIQGPKLGTVLSQVKKLDASVLVLSQCKPSPFCCFMRSSGEEFVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0428400 | OsNip_05t0428400-00 | Chr05 | 21006679 | 21009677 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGAGCAGCGGTGGCAGCAGCGAGCACTTCCTGCGCCAGTTCAGCGCGAGCGACGGCGCACCGCTGCCGCGTGAGCTGGGCGAGGAGTGGGCGGCGGCCGAGTGCGGCAGGAGGGGGTCGAGGCGGTGGTCCAGGAAGAAGGCGAGGGGGCACCACCGCCGCGGCGGGGGCGGAGGCGGCGGCGGCGGGCTCTGCAGGAGCAGGGAGGAGGCCCCCGCGGGGAGGAAGCGGGTGATGGTGGTGGTGGACCAGAGCTCCGGTGCCAAGCACGCCATGATGTGGGCGCTCACCCACGTCGCCAGCAAGGGGGACTTCCTCACCCTGCTCCACGTCCTCCCCCACGGCGGCGGCGACGCCTCCGCGCTCGCCAACTCCCTCGGCTCACTCTGCAAGGCCTGCAAGCCCGAGGTGGAGGTTGAGGCGCTTGTGATCCAAGGGCCCAAGCTGGGCACCGTCCTCAGCCAGGTGAAGAAGCTGGATGCATCTGTGCTGGTGCTGAGCCAATGCAAGCCATCTCCTTTCTGCTGCTTCATGAGGAGCAGCGGCGAGGAGTTCGTGGAGGAGTGCATCAACAGGGCGGACTGCCTGACGCTGGCGGTGAGGCGGCAGAGCAAGGGCGTCGGCGGCTACCTCATCAGCACCCGGTGGCAGAAGAACTTCTGGCTGCTGGCTTGA
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| Protein seq | MGSSGGSSEHFLRQFSASDGAPLPRELGEEWAAAECGRRGSRRWSRKKARGHHRRGGGGGGGGGLCRSREEAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGGGDASALANSLGSLCKACKPEVEVEALVIQGPKLGTVLSQVKKLDASVLVLSQCKPSPFCCFMRSSGEEFVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0428400 | OsNip_05t0428400-01 | Chr05 | 21006680 | 21009695 | - | IsoSeq | ||
| CDS seq | CAGAAGCCCAAACACACGAGCGCGGCAGCGGCAGCGGCTAGCAGCAAGCACCGCGACGCGACGCGCCGAGCAGTGCACCACGCCACTGGATCGAGAGGAGGGGGAGGAGATCGCCGATGGGGAGCAGCGGTGGCAGCAGCGAGCACTTCCTGCGCCAGTTCAGCGCGAGCGACGGCGCACCGCTGCCGCGTGAGCTGGGCGAGGAGTGGGCGGCGGCCGAGTGCGGCAGGAGGGGGTCGAGGCGGTGGTCCAGGAAGAAGGCGAGGGGGCACCACCGCCGCGGCGGGGGCGGAGGCGGCGGCGGCGGGCTCTGCAGGAGCAGGGAGGAGGCCCCCGCGGGGAGGAAGC
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| Protein seq | QKPKHTSAAAAAASSKHRDATRRAVHHATGSRGGGGDRRWGAAVAAASTSCASSARATAHRCRVSWARSGRRPSAAGGGRGGGPGRRRGGTTAAAGAEAAAAGSAGAGRRPPRGGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 3.566359 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0875300 | RBH | 0.0 | 0.000000 | 2.879536 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35380 | RBH | 0.000000 | 0.0 | 0.916748 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0428400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017990 | RBH | 0.000000 | 0.0 | 1.172049 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018000 | RBH | 0.0 | 0.0 | 0.970547 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017810 | RBH | 0.0 | 0.0 | 3.298012 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017860 | RBH | 0.000000 | 0.043702 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018090 | RBH | 0.000000 | 11.681583 | 2.867518 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0321900 | RBH | 1.7339195 | 0.9940685 | 16.3218215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017580 | RBH | 0.000000 | 0.278007 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0333300 | RBH | 2.158737 | 0.063588 | 21.367911 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017910 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017820 | RBH | 0.000000 | 5.342246 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017950 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018000 | RBH | 0.0 | 0.413412 | 0.062526 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018020 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017510 | RBH | 0.0 | 0.739341 | 1.769790 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017790 | RBH | 0.0 | 0.000000 | 3.151489 |
