Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0875300 | OGI:01112570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37982651-37985429 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAATCAGTGGAGGAGTATTCACTAATCAGCTAGCACGGGTGCAACACGCTCTCGTGACCACCCCCCCATCCCCTCTCCTTGGCTCCCACTCTTTAAGCGGCCCTTGTCCTTTCAGCTCCTCGGTCCCTCCCCCTCCATCTCACTCCCTTATATCGCTCGCTCACTCGCTAGCTCGCACCGCGCCGGCCGGGAGCACGCACGCACGCATTGCCATCGCCGTGCGCGGAGGAGGAGAGGAGATCGAGGTCTCGAGGTCGTTGGTTGGTTGGTTGCATGGCGAGCGGTGGCGGGGAGCACTTCTTGCGGCAGCTGAGCGCGAGCAACGGGGGATACGGTGGTGCGGCGCAGTATCAGATGGGGCGAGGGGTGGTGGCGGAGGAGGAGGTGGAGCTCGGCGGAGGAGGCAGGAGGAGGGGCTCGAAGCGGTGGTCGAAGAAGAGGGCGGGGAGGGGCGGGTACGGCGGCGGCGGCGGGGGGAAGGGGGACGCGGCCGCGGCCGCGGCGGCGGCGGCGGCGGTGGCCGGGAGGAAGCGGGTGATGGTGGTGGTGGACGACACCTCCGGGGCCAAGCACGCCATGATGTGGGCGCTCACCCACGTCGCCAACAAGGGGGACTTCCTCACGCTGCTCCACGTCCTCCCGTACGCCGGCGCCGGCAGAGGCGAGGAGACCCCCTCCCTCGCCAACTCCCTCGGCACGCTCTGCAAGGCCTGCAGGCCAGAGGTAGCGTATACGCGTATACGTACATCATACGTGCATGATGTTTCTTTTTTTTTCTTTATTTTTTTTAGAGGGATGCATGTCATTTTGTGTGCTGTTTTTACTTTTGTGCTCTAATATGTGTTTTCAAATTACAAAATTTTAGGCGCTTCGATTAGAGAATCATGTGTCTGATCTCTGCTGTCTAGCTTTGGTCATTCTGGATTTGGAAGCATCTGCTTGGAGGCAATGCACGAGGGAATTATTACTGCTAGCTCACAAAGAATTAGAAAAAAAAGCTTTTGTTAGTGTACTGGCTCATGAGAACTTGACTAAACTGAAGGATAAAAATAAAGTATAATTTACTGTACGGTTTGTAGAGTTATCAATCCTGAAGGTCACCTGAGAGGGATAGTTGTAAAGTATTATTTGTTGGGGGACAATCATACAGTAGATCAGATCAGATATCAGAACATACATGAAAAGGGGATCGTATTCCACTTTTCATGGATGAACGGATCTTGCATCTTGGCAGGCCAAAAAGGTTCGAGTCTTTGATAAAAGTTAAAAAGTACTACCTCCGTTCCATAATAAGTGCATAAGTGCAGCTCCGTTCCATAATAAGTGCAGCCATAAGTTTCCGCGCTCAACTTTAATCGTCCGTTTTATTTGAATTTTTTTTATAATTAGCATTTTTGTTGTTATGAGATGATAAAACATGAATAGTACTTTACTTGTGACTTATGTTTTTAAATTTTTTCAAAAATTTTTTAATAAGACGAACGGTCAAAGTTGGGCGCGGAAAACCATGGCTACACTTATTTTGGGACGGAGGAAGTAATTAGAAAAGAACAATTTGTGGGGCTCATGCTCATCCCAGGTTCTAAAACCATTAGTAAAATGCATCAGTAAAATCCTACCTAAACCGGCCGTAAACAATGGCATTATGAGATCATATCATCATTCCTTCCTTGATTTGCTTGCATTGCTTGAATCAAAAGTCAGCACTTCAATGTAGTAGTGTACTACTAGTAGTACATCCCTGCGTAAGAGCAACAGTACCGTGCATGAAGCCATGAACTATTCCTTTGTCCTACTATAGCATGTGCAAAGGAGGGCTCATACGAAATGGGTGTGAATGTGGTAGGTGGAGGTTGAAGCACTTGTGATCCAAGGACCAAAGCTGGCCACTGTCCTCAGCCAAGTGAAGAAATTGGAGGCGTCTGTGCTTGTGCTCAGCCAATCCAAGCCATCCCATTTCTGTTGGTTGAGTTGGTAAGCATTTCTCACCTCCTACCACTGTAGCTCTATCTTTCTCATCCCTATTGGATGTGTTAAAAATGTGAGGCTCAGGTCAACTATGAATGGAAACTGGCGGGGAGAATATAGTATCATGGTGTCAGTCAGTCCCTAGTGTTATTTTAAAACAATGCCCAGATTAATGCATATGGCTAGGTTCCAATAGAAACCTTTAGTTGTACATCATTTTTTATATCGTACAAGTATCAGTTTATCAGGATACATAATTACCACTAGATCTAAATTTATGGGGAGAGATCTGGTCATCTTTTATGATAAGCAGGCCCACTAACAAGCAATGAGTAAACTGTTTGGGAAATAATCCTCCTTCACCACCGTTCAATAGCAGGGTCCCCTGCCTTTCGGGAAAATAACACCAGGCAGCAGCCTCCATGTGCTATCCATAAATCACAGATGCTTTCCTTGTCCTTTTTTGGTCACAACTCAACCAAATGAAAGCAAGACTCCTACACTTCACTCACCTAATTTTTGCTACGTTCACGTGGACAATGTAACAATCACCATCACCAACACATTGAAGTTGAGTCAGGAAAAGTTACTTTTCATCTTGTCGTAAACTATAGCTATGGTCCTTGTTGAGCAAATGCAAATGTCTGCCTGCGATTTTACAGCATCCTGCGGAGCAGCAGCGAGGAGTTCGTCGAGCAATGCATCAACCAGGCTGAGTGCCTGACGTTGGCAGTGAGGAAGCAGAGCAAGGGCGTCGGCGGGTACCTCATCAGCACACGGTGGCAGAAGAACTTCTGGCTCCTGGCTTGA
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| CDS seq | GTAATCAGTGGAGGAGTATTCACTAATCAGCTAGCACGGGTGCAACACGCTCTCGTGACCACCCCCCCATCCCCTCTCCTTGGCTCCCACTCTTTAAGCGGCCCTTGTCCTTTCAGCTCCTCGGTCCCTCCCCCTCCATCTCACTCCCTTATATCGCTCGCTCACTCGCTAGCTCGCACCGCGCCGGCCGGGAGCACGCACGCACGCATTGCCATCGCCGTGCGCGGAGGAGGAGAGGAGATCGAGGTCTCGAGGTCGTTGGTTGGTTGGTTGCATGGCGAGCGGTGGCGGGGAGCACTTCTTGCGGCAGCTGAGCGCGAGCAACGGGGGATACGGTGGTGCGGCGCAGTATCAGATGGGGCGAGGGGTGGTGGCGGAGGAGGAGGTGGAGCTCGGCGGAGGAGGCAGGAGGAGGGGCTCGAAGCGGGGGACGCGGCCGCGGCCGCGGCGGCGGCGGCGGCGGTGGCCGGGAGGAAGCGGGTGATGGTGGTGGTGGACGACACCTCCGGGGCCAAGCACGCCATGATGTGGGCGCTCACCCACGTCGCCAACAAGGGGGACTTCCTCACGCTGCTCCACGTCCTCCCGTACGCCGGCGCCGGCAGAGGCGAGGAGACCCCCTCCCTCGCCAACTCCCTCGGCACGCTCTGCAAGGCCTGCAGGCCAGAGGTGGAGGTTGAAGCACTTGTGATCCAAGGACCAAAGCTGGCCACTGTCCTCAGCCAAGTGAAGAAATTGGAGGCGTCTGTGCTTGTGCTCAGCCAATCCAAGCCATCCCATTTCTGTTGGTTGAGTTGCATCCTGCGGAGCAGCAGCGAGGAGTTCGTCGAGCAATGCATCAACCAGGCTGAGTGCCTGACGTTGGCAGTGAGGAAGCAGAGCAAGGGCGTCGGCGGGTACCTCATCAGCACACGGTGGCAGAAGAACTTCTGGCTCCTGGCTTGA
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| Protein seq | VISGGVFTNQLARVQHALVTTPPSPLLGSHSLSGPCPFSSSVPPPPSHSLISLAHSLARTAPAGSTHARIAIAVRGGGEEIEVSRSLVGWLHGERWRGALLAAAEREQRGIRWCGAVSDGARGGGGGGGGARRRRQEEGLEAGDAAAAAAAAAAVAGRKRVMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVLPYAGAGRGEETPSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASVLVLSQSKPSHFCWLSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0875300 | OsNip_01t0875300-00 | Chr01 | 37982651 | 37985429 | + | RAP2018-11-26 | ||
| CDS seq | GTAATCAGTGGAGGAGTATTCACTAATCAGCTAGCACGGGTGCAACACGCTCTCGTGACCACCCCCCCATCCCCTCTCCTTGGCTCCCACTCTTTAAGCGGCCCTTGTCCTTTCAGCTCCTCGGTCCCTCCCCCTCCATCTCACTCCCTTATATCGCTCGCTCACTCGCTAGCTCGCACCGCGCCGGCCGGGAGCACGCACGCACGCATTGCCATCGCCGTGCGCGGAGGAGGAGAGGAGATCGAGGTCTCGAGGTCGTTGGTTGGTTGGTTGCATGGCGAGCGGTGGCGGGGAGCACTTCTTGCGGCAGCTGAGCGCGAGCAACGGGGGATACGGTGGTGCGGCGCAGTATCAGATGGGGCGAGGGGTGGTGGCGGAGGAGGAGGTGGAGCTCGGCGGAGGAGGCAGGAGGAGGGGCTCGAAGCGGGGGACGCGGCCGCGGCCGCGGCGGCGGCGGCGGCGGTGGCCGGGAGGAAGCGGGTGATGGTGGTGGTGGACGACACCTCCGGGGCCAAGCACGCCATGATGTGGGCGCTCACCCACGTCGCCAACAAGGGGGACTTCCTCACGCTGCTCCACGTCCTCCCGTACGCCGGCGCCGGCAGAGGCGAGGAGACCCCCTCCCTCGCCAACTCCCTCGGCACGCTCTGCAAGGCCTGCAGGCCAGAGGTGGAGGTTGAAGCACTTGTGATCCAAGGACCAAAGCTGGCCACTGTCCTCAGCCAAGTGAAGAAATTGGAGGCGTCTGTGCTTGTGCTCAGCCAATCCAAGCCATCCCATTTCTGTTGGTTGAGTTGCATCCTGCGGAGCAGCAGCGAGGAGTTCGTCGAGCAATGCATCAACCAGGCTGAGTGCCTGACGTTGGCAGTGAGGAAGCAGAGCAAGGGCGTCGGCGGGTACCTCATCAGCACACGGTGGCAGAAGAACTTCTGGCTCCTGGCTTGA
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| Protein seq | VISGGVFTNQLARVQHALVTTPPSPLLGSHSLSGPCPFSSSVPPPPSHSLISLAHSLARTAPAGSTHARIAIAVRGGGEEIEVSRSLVGWLHGERWRGALLAAAEREQRGIRWCGAVSDGARGGGGGGGGARRRRQEEGLEAGDAAAAAAAAAAVAGRKRVMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVLPYAGAGRGEETPSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASVLVLSQSKPSHFCWLSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 2.879536 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0428400 | RBH | 0.000000 | 0.0 | 3.566359 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g65440 | RBH | 0.0 | 0.326352 | 1.536694 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0875300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042100 | RBH | 0.000000 | 47.845348 | 8.242782 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0041680 | RBH | 0.0 | 3.065513 | 2.663128 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042020 | RBH | 0.000000 | 18.472847 | 4.232927 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0041490 | RBH | 0.0 | 0.496090 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041060 | RBH | 0.000000 | 12.583300 | 4.755545 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0624400 | RBH | 4.6180315 | 8.550625 | 7.8436295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0040700 | RBH | 0.0 | 0.452176 | 0.574075 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0625000 | RBH | 6.069231 | 4.039007 | 19.8582885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041060 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041010 | RBH | 0.0 | 5.025797 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041240 | RBH | 0.000000 | 8.258304 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041210 | RBH | 0.0 | 0.445387 | 0.627177 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041070 | RBH | 0.0 | 7.676673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G041490 | RBH | 0.000000 | 1.871541 | 5.840103 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041150 | RBH | 0.317953 | 0.000000 | 2.790561 |
