Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0208500 | OGI:05018200 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:6721738-6723481 | ||||||||
| Gene Symbol | GA2OX10, OsGA2ox10 | ||||||||||
| DNA seq | GTGATGGCAATTGTGCATCTGATTCAACTTTTTTTTTTGAAACTAAACCGGCAGGAGAACTGCCAATTATATTTTCAATAAGCAGGAGTAAAAACCCTAGACGGGTTACAAGAAAAGAAAAAACAACTACCGGCTGGCTGAATAGCTGCACCGCACACGCCACAACTCACTAACAACAGAAACCACTGACGGAGCCCAACATAGAACGTCGTTACCAAGCTTGACCAAGACGGCAAAGGGGTTCCGACCTTGCAACCGTGTCATTGTTGCCGAGCTTGCCGCCTAGCGACACAGCAGCTCCGACTTCAAATCGGTTGCATCATCCATACCTAACTCGCTGTCAATGGTCAAGTGGCTTCAACTTCCCACGAAGAACTTCAGCCAAAGCCGTCTAAACGCCACATCCTATTCACGGCCAACAAACAAAACCCCTAGAAAGAGAATGCAACGTGTCATCGTTGCCCAGCTTCGTCACCCTACGAAGCAGCTCCGACTTCACCTAGCAAACACAAGCAAGGAGCGAAGATTGCCCGCCGCAAAACAAAAAGTGGGACTAGACAGCGAAGGCCTCATCAAAACCAAGTACTGAAAAGCTTCGAAGCCAATGCATAGACCATTAACTACATCCTTGCACGAAAATGTTTCTCCAAAGCGGTGCCTCCAAGGAGGACACGACGTGGATCTCCGTCACCGCTCGTCCGGAAGCCGGAGCCAGGTTTTCACTCGGAGAACGGTAGGGAAAGGAGAGGGATCAACGCCAGAACGACGCCTCCAAGGAGGGGAACGACGCCAAAGGCGCCGCCGTCGTCAGCCGGCCAATGGCACGGCGAGGCTTTCGCCAGCGATTTCCCGTCCAAACCCACACACCCAATTCGCGCAAGAATGATCGTCGCCGGTCGGCTGCATCGTCCCTTTAGCAATCAGTCCTAGGCCATCACCCACAGCTCTGGCAGATCGCCAGACCAGCCGCAGCACTCGCCCTCCTGCCGCGGCCACCCACGCCTCCTGCTGCCCTCTGACCGCTGCCCTTGTCGCGTCGTCCACAGCTGAGGAGCCACCGGAGGGGATCCGGCCTCCCTCGCCAGAGAGGCCAAATCCGGACTGGGGGAGCCGGTGTCGAAATAGGGGGAGCCATAGCCGGAGGCGCTGTGCGTAGCCAGGCCCATGCCTCTCCCGCCGTCAGCGCCGCCTCCGCCGTCTCGTCGTCATCGCCGCCGCCGCCGCCCCGGAGCCGGCCTCCTTCGTGGCCCAGCTGCGGGCGTTGGATCCGGCCTGGGAGAGCCAGATCCAGCGGCGCCCAGGCTCGCTGCCTCGTCCCCGCCGCCAGCGACGTCGCCTCCGCCCGCGCCGCGACTGCCCCATCCAGCGGCCTTCTCCGCCGGCGCCACGACTGCCCCAGCCAGCGCCTCGTCCTGATGCAGCGCGGCCGGCGCCACTTCGTCCCGATCTGGCTGCGAGGGGGCCAGATCCGCTAACAGCGACGCTGGCTCTGCTGCCTCTGGCCGTCGGCGTCGCCGGAGCCGCCTCGACGCGTCGCCGCCCCTCCGCCTGTTTCCCGTCGGGGCCCCAACCGCAGGGTGTTGGAGGGGGTAGAAGGCCCCGCCGCCGCCGTCCTTGCCGCCGTCCGGCTTTGCCGGCGGCTGCTCAGGCGGCGGCGAGGTGGGGGAGGCGAGGGAGAGAAGGCCGGCGGCGGGGCGGCTTCGGGTCGCCTCCCGTGTTGCCCTGGAGCGGAGCGACACGGCAT
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| CDS seq | ATGCCGTGTCGCTCCGCTCCAGGGCAACACGGGAGGCGACCCGAAGCCGCCCCGCCGCCGGCCTTCTCTCCCTCGCCTCCCCCACCTCGCCGCCGCCTGAGCAGCCGCCGGCAAAGCCGGACGGCGGCAAGGACGGCGGCGGCGGGGCCTTCTACCCCCTCCAACACCCTGCGGTTGGGGCCCCGACGGGAGAGGCATGGGCCTGGCTACGCACAGCGCCTCCGGCTATGGCTCCCCCTATTTCGACACCGGCTCCCCCAGTCCGGATTTGGCCTCTCTGGCGAGGGAGGCCGGATCCCCTCCGGTGGCTCCTCAGCTGTGGACGACGCGACAAGGGCAGCGGTCAGAGGGCAGCAGGAGGCGTGGGTGGCCGCGGCAGGAGGGCGAGTGCTGCGGCTGGTCTGGCGATCTGCCAGAGCTGTGGGTGATGGCCTAGGACTGATTGCTAAAGGGACGATGCAGCCGACCGGCGACGATCATTCTTGCGCGAATTGGGTGTGTGGGTTTGGACGGGAAATCGCTGGCGAAAGCCTCGCCGTGCCATTGGCCGGCTGA
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| Protein seq | MPCRSAPGQHGRRPEAAPPPAFSPSPPPPRRRLSSRRQSRTAARTAAAGPSTPSNTLRLGPRRERHGPGYAQRLRLWLPLFRHRLPQSGFGLSGEGGRIPSGGSSAVDDATRAAVRGQQEAWVAAAGGRVLRLVWRSARAVGDGLGLIAKGTMQPTGDDHSCANWVCGFGREIAGESLAVPLAG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0208500 | OsNip_05t0208500-03 | Chr05 | 6721756 | 6723481 | - | RAP2018-11-26 | ||
| CDS seq | GCCGTGTCGCTCCGCTCCAGGGCAACACGGGAGGCGACCCGAAGCCGCCCCGCCGCCGGCCTTCTCTCCCTCGCCTCCCCCACCTCGCCGCCGCCTGAGCAGCCGCCGGCAAAGCCGGACGGCGGCAAGGACGGCGGCGGCGGGGCCTTCTACCCCCTCCAACACCCTGCGGTTGGGGCCCCGACGGGAAACAGGCGGAGGGGCGGCGACGCGTCGAGGCGGCTCCGGCGACGCCGACGGCCAGAGGCAGCAGAGCCAGCGTCGCTGTTAGCGGATCTGGCCCCCTCGCAGCCAGATCGGGACGAAGTGGCGCCGGCCGCGCTGCATCAGGACGAGGCGCTGGCTGGGGCAGTCGTGGCGCCGGCGGAGAAGGCCGCTGGATGGGGCAGTCGCGGCGCGGGCGGAGGCGACGTCGCTGGCGGCGGGGACGAGGCAGCGAGCCTGGGCGCCGCTGGATCTGGCTCTCCCAGGCCGGATCCAACGCCCGCAGCTGGGCCACGAAGGAGGCCGGCTCCGGGGCGGCGGCGGCGGCGATGA
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| Protein seq | AVSLRSRATREATRSRPAAGLLSLASPTSPPPEQPPAKPDGGKDGGGGAFYPLQHPAVGAPTGNRRRGGDASRRLRRRRRPEAAEPASLLADLAPSQPDRDEVAPAALHQDEALAGAVVAPAEKAAGWGSRGAGGGDVAGGGDEAASLGAAGSGSPRPDPTPAAGPRRRPAPGRRRRR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0208500 | OsNip_05t0208500-01 | Chr05 | 6722266 | 6723481 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGTGTCGCTCCGCTCCAGGGCAACACGGGAGGCGACCCGAAGCCGCCCCGCCGCCGGCCTTCTCTCCCTCGCCTCCCCCACCTCGCCGCCGCCTGAGCAGCCGCCGGCAAAGCCGGACGGCGGCAAGGACGGCGGCGGCGGGGCCTTCTACCCCCTCCAACACCCTGCGGTTGGGGCCCCGACGGGAGAGGCATGGGCCTGGCTACGCACAGCGCCTCCGGCTATGGCTCCCCCTATTTCGACACCGGCTCCCCCAGTCCGGATTTGGCCTCTCTGGCGAGGGAGGCCGGATCCCCTCCGGTGGCTCCTCAGCTGTGGACGACGCGACAAGGGCAGCGGTCAGAGGGCAGCAGGAGGCGTGGGTGGCCGCGGCAGGAGGGCGAGTGCTGCGGCTGGTCTGGCGATCTGCCAGAGCTGTGGGTGATGGCCTAGGACTGATTGCTAAAGGGACGATGCAGCCGACCGGCGACGATCATTCTTGCGCGAATTGGGTGTGTGGGTTTGGACGGGAAATCGCTGGCGAAAGCCTCGCCGTGCCATTGGCCGGCTGA
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| Protein seq | MPCRSAPGQHGRRPEAAPPPAFSPSPPPPRRRLSSRRQSRTAARTAAAGPSTPSNTLRLGPRRERHGPGYAQRLRLWLPLFRHRLPQSGFGLSGEGGRIPSGGSSAVDDATRAAVRGQQEAWVAAAGGRVLRLVWRSARAVGDGLGLIAKGTMQPTGDDHSCANWVCGFGREIAGESLAVPLAG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0208500 | OsNip_05t0208500-04 | Chr05 | 6721738 | 6723481 | - | IsoSeq | ||
| CDS seq | ATGCCGTGTCGCTCCGCTCCAGGGCAACACGGGAGGCGACGCGTCGAGGCGGCTCCGGCGACGCCGACGGCCAGAGGCAGCAGAGCCAGCGTCGCTGTTAGCGGATCTGGCCCCCTCGCAGCCAGATCGGGACGAAGTGGCGCCGGCCGCGCTGCATCAGGACGAGGCGCTGGCTGGGGCAGTCGTGGCGCCGGCGGAGAAGGCCGCTGGATGGGGCAGTCGCGGCGCGGGCGGAGGCGACGTCGCTGGCGGCGGGGACGAGGCAGCGAGCCTGGGCGCCGCTGGATCTGGCTCTCCCAGGCCGGATCCAACGCCCGCAGCTGGGCCACGAAGGAGGCCGGCTCCGGGGCGGCGGCGGCGGCGATGACGACGAGACGGCGGAGGCGG
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| Protein seq | MPCRSAPGQHGRRRVEAAPATPTARGSRASVAVSGSGPLAARSGRSGAGRAASGRGAGWGSRGAGGEGRWMGQSRRGRRRRRWRRGRGSEPGRRWIWLSQAGSNARSWATKEAGSGAAAAAMTTRRRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.844956 | 0.284359 | 7.707777 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0208500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007060 | SBH | 0.000000 | 0.000000 | 7.344431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007110 | SBH | 0.0 | 0.218079 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007220 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007060 | SBH | 0.0 | 0.302235 | 0.433126 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007110 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007050 | RBH | 0.0 | 1.901223 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007120 | SBH | 5.610625 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007210 | SBH | 0.0 | 0.610471 | 0.355079 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007160 | SBH | 0.069288 | 7.294311 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
