Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0007210 | OGI:05018200 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:6610527-6616833 | ||||||||
| Gene Symbol | GA2OX10, OsGA2ox10 | ||||||||||
| DNA seq | atgaactgatctgtagtgtgctgcttgtatcaacacgaaaaccttgcccatcaacatgtatatcaactattacaaacacgctggccaaaatgaaaaaggaaaacataaaaccacaaaagaaaagagacatacaaacattctatacacactAaaaaaaaataaaatcagtcagcttcagtttcaaagtgacatagcctgttctcagccagcttggtcctgtaggctgaagccttgtactcccgccaggtgaactccctgtaccggcggcgcccgccatcctccgccaccagccatggcagcggtgctagtcgctcccgtagcggcggcccggcgaagaagatgactgacacccgtggccgcgggctactcaccatcacccggtgcctcacgcttcgaaatctcccgtttgttagaacctgttcgaacggataattataaagctttattatgcatgggtgcaataattagtcgtacattattatgttattggttgtaattaatctcaagaatttatggagtgtaaagtgcaatactacaatttttgtattgagaccaaaagtgtaaaagatttttcactatctaaaaatataacaataaggtgttttttttaacataaattctatcaatgcaatgaagttgagttctcatatcgaaccgaatgaatcaatctttcccttgtgtgatggcaattgtgcatctgattcaactttttttttaaactaaaccggcaggagaactgccaattatattttcaataagcaggagtaaaaaccctagacaggttacaagaaaagaaaaaacaactaccggctggctgaatagctgcacagcacacgccacaactcactaacaacagaaaccactgatggagcccaacatagaacgtcgttaccaagcttgaccaagacggcaaaggggttccgaccttgcaacagtgtcatcgttgccgagcttgccgcctagcgacacagcagctccgacttcaaatcggttgcatcattcatacctaactcgctgtcaatggtcaagtggcttcaacttcccacgaagaacttcagccaaagccgtctaaacgccacatcctattcacggccaacaaacaaaacctctagaaagagaatgcaacgtgtcatcgttgcccagcttcgtcaccctacgaagcagctccgacttcacctagcaaacacaagcaaggagcgaagattgccgccgcaaaacaaaaagtgggactagacagcgaaggcctcatcaaaaccaagtactgaaaagcttcgaagccaatgcatagaccattaacgacatccttgcacgaaaatgtttctccaaagcggtgcctccaaggaggacacgacgtggatctccgtcaccgctcgtccggaagccggagccaggttttcacccggagaacggtagggaaaggagagggatcaacgccagaacgatgcctccaaggaggggaacgacactaaaggcgccgccgtcgtcagccggccaatggcacggcgaggctttcgccagcgatttcccatccaaacccacacacccaattcgcgcaagaatgatcgtcgccggtcggctgcatcgtccctttagcaatcagtcctaggccatcacccacagctccggcagatcgccagaccagccgcagcactcgccctcctaccgcggccacccacgcctcctgctgccctctgaccgccgcccttgtcgcgtcgtccaccgctgaggagccaccggaggggatccggcctccctcgccggagaggccaaatccggactgggggagccggtgtcgaactggggggagccatagccggaggcgctgtgcgcagccaggcccatgcctctcccgccgtcagcgccgcctccgccatcccgtcgtcatcgccgccgccgccgccccggagccggcctccttcgtggcccagctgcgggcattggatccggcctgggggagccagatccagcggcgcccaggctcgctgcctcgtccctgccgccagcgacgtcgcctccgcccgcgccgcgactgccccatccagcggccttctccaccggcgccacgactgccccagccagcgcctcgtcctgatgcagcgcggccagcgccacttcgtcctgatctggctgcgagggggccagatccgctaacagcgacgctggctctgctgcctctggccgtcggcgtcgccggagccgcctcgacgcgtcgccgcccctccgcctgtttcccgtcggggccccaaacgcagggtgttggagggggtagaaggccccgccaccgccgtccttgccgccgtccggctttgccggcggctgctcaggcggcggcgaggtgggggaggcgagggagagaaggccggcggcggggcggcttcgggtcgcctcccgtgttgccctggagcggagcgacacggcatgaagaaaaccttgcagttcctctaatttaattctaccacctggctacagaggaagtcggcaaagcgtggacctaaccatggaatctaatctaagggaccgcaatgcacggttgccatgatcaattgatcattgtactaccgtgttttcagatcactgatcaattgatcgcctcccgtgtgctttacattggacttttattatgaaatgattctgaataatgactgatggttttgcctgtttgacaacacaccgactggcagcttggttccccaaaaggtgggctgattgggatggactttgacatccacacgaTttttcttctttcgtttttatgatcacacgtcagattcaacatcgccgtctcctgagccttacagctaataagcctaaaccattttcagaaaaaagaaaaggaaaaggaaaagtttgatatacgagtgaacttattttcagtgaaaaaaaactaattaataggtgctaggccttgttaagttcagcgtgttaatttaatttccacaatatatatgaagctattaatttttcgacgtgacatttaaccattcctcttattAaaaaggttatataatatttatttttaacttgatccatgattaaatatactttaaacataacttatattttcaaacatattataaaaaattttagataagacgaatgctcaaaattaatgtccaaaaatcatgtatttaaaacagagggagcagtaactacctgtaagacatctccaacattaacgaagaacgactttcgatccggaggcacagaagcccagctaccatcacgcaaagagatctcaaggccagaggtgtcgttggatcggagcaccgagatgatctgagggtcggtgtgctctccaaacccggttaacctgccatggccttgctgcttcaactcagggtgtggtgggtagtggttcaccctcagcacggagtcactctcctcgtgtgagaccagcctaaccaacgcatctttctccttcaggcctagcccttccgccatcaactttagcacctcccacatcatcgctctcaccgccacaacgtactcatttaagatatcgctgcaatgcacacaatgggcaaaaaaaaaatgatttttaacatttaaacatcaaagttgcttcatggtatatatagatattattgtctcaatttaccgaacaacgttatatactcctaaaattatactctttcttgacgttgggagtactcaaatataacatttatgaaaaataatagtaatatggtttcaaaatcataatactatgaaaatcgatatattactttatgcatcacttttttgggctcacaataattgggggggtgatgaaatcaaaccagtggcatgagatgtcactgtgggtccaattttatttgccatgctggcatgctgagcaggagagtttctggaaagggacttgatgcgacgaagacatcacaaaggaaaaatgaaggcattaattgaggccagcttgaagtaggccatattaccacagcggtaaccacacgtgcaccaactaaaaaattactcttttatgggcacaaaccacacatgacacaattttgagctctgaaaacatgagtaagcaaactggtcggccagctcaaacttttatgttaaaaatgtttttataagttctttttccaataaaaaggaggctcaaattgtcgctcccctaaacggtctagattctcatttatattccaagagtatatagtataagctaagaaaacaagcttttctaaattttcgctagctatctacttataagtgcttgttaaaatctttaagcttctcaaatagatctaaaagagaaattgaggaatggggtgagaacagtgactaagcaacccaggtattctcaccatttttcttctctttcaataattattgatagtaagtgtctcctcagtatcagaacttgctcttttcagaaaacagtgactaagcaagcattgtgcaaaagtgatgccaggtgacacgtagggttgctgcaggaagcagagggaacctgctgatgtgtggtcatgtgatgaggggcatgcatgcttgcatgagagaatcaaaatgcattatatcagtgctttcaaaagctgaaatctactcatacatgggctcagtttcatcaatagtgagaaacagataggcaaactaatctcaaaagaaaaaaaAGaaGaaaagaaagAaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaagatggcaataatctagggcagaatctagtgtatctgtagagagatgggaaaaatggtagaagggtccatgtggtggggtgagtttagcgaaatttcatagattctctactcttgcttcaaaattcatcacgtgctatttgtatctcatcttttctgcccactgtaacccatggttatggcctcatctgatctaaccacgaatattacttacgcatatgcatcacatggctaaacaaaattgatcttagttttttttccgttagtcgcactctgcacaactttttatactgtttaagaacttttatacatggcctattagtttactttagctcttaataaggttttgatataagttaatttgttcataaagtatccatacttggctaggacaatatatatatcagaaacctccgaaaatttccatatgtttagcccatttatgaTttttttaatacatacactcttttgatctaatgactattattatccaaactatttatccgatgactaatatatttttgataatgtggcacatcctcgtaaaaaaaggtttgttgctttctaaatataagataagataagattgtaaaacttgcatgactaaaatgtcattaccaaattagagtccgaccaccaccacatatacaaccatgaataaagattgtcgaatgaaaaaataggttggtagtttcattacttgaattaatcttcagaaattaacattgaagaattctctataatgaaaaataaaataaaattatttagctaaaagttgatcgctttttcctactcagctattggaaactttataaaaccgtgtgctgatcaacctgccgctctggttttgcacacgtttctttcacagaattttttaagTttttttttaaaaaatatacaggtaaacgaaaagaaaagcacacaatttcctaccaaaaaaaacaacataagcacaccatttccggtcgattttaattccagaaatattttaaaaagccactgcttcaacggggcccactggcagtgaccgctacaaatcacagacaagccggcttcggcaatgcgtagaagcagagtgtataaaactcaccggaacgagccgtacgacggcgacggcgacgcctcgccgtgcgcgggcaatggcgcggcggcggcggcggcgacgccgagcaggaggtactcgacccacccgaggtccccgttgcagccgatcctcttgctcccgtacccgaacgggctccccggcgcggcggcggcggccgccgccgccgccgcctccttctccggctgcgccatcgcgaagaacgccgccgccgcggcctccacgcgcgccaggagccccgccggcacgccgtggcccgtcaccttgaagaacccgtgtccctcgcacgccgccaccaccgcgcgcgccgcgtccgccctgcaggcgccgccgcccaggtccacctccggcacgtcggccagcggcggcgccgccttctgcaccgccgccggcagggcgatctgctccaactcccccttcgccaaaaccaccatgactgagcgacaactagaatgctagtagctagctaggtagaaagcagaggagaacgccgattaaaagcagaggaatcgaaggaagtgaagaatggagg
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| CDS seq | atggtggttttggcgaagggggagttggagcagatcgccctgccggcggcggtgcagaaggcggcgccgccgctggccgacgtgccggaggtggacctgggcggcggcgcctgcagggcggacgcggcgcgcgcggtggtggcggcgtgcgagggacacgggttcttcaaggtgacgggccacggcgtgccggcggggctcctggcgcgcgtggaggccgcggcggcggcgttcttcgcgatggcgcagccggagaaggaggcggcggcggcggcggccgccgccgccgcgccggggagcccgttcgggtacgggagcaagaggatcggctgcaacggggacctcgggtgggtcgagtacctcctgctcggcgtcgccgccgccgccgccgcgccattgcccgcgcacggcgaggcgtcgccgtcgccgtcgtacggctcgttccgcgatatcttaaatgagtacgttgtggcggtgagagcgatgatgtgggaggtgctaaagttgatggcggaagggctaggcctgaaggagaaagatgcgttggttaggctggtctcacacgaggagagtgactccgtgctgagggtgaaccactacccaccacaccctgagttgaagcagcaaggccatggcaggttaaccgggtttggagagcacaccgaccctcagatcatctcggtgctccgatccaacgacacctctggccttgagatctctttgcgtgatggtagctgggcttctccaggtggtagaattaaattagaggaactgcaaggttttcttcatgccgtgtcgctccgctccagggcaacacgggaggcgacccgaagccgccccgccgccggccttctctccctcgcctcccccacctcgccgccgcctgagcagccgccggcaaagccggacggcggcaaggacggcggtggcggggccttctaccccctccaacaccctgcgtttggggccccgacgggaaacaggcggaggggcggcgacgcgtcgaggcggctccggcgacgccgacggccagaggcagcagagccagcgtcgctgttagcggatctggccccctcgcagccagatcaggacgaagtggcgctggccgcgctgcatcaggacgaggcgctggctggggcagtcgtggcgccggtggagaaggccgctggatggggcattcgacaccggctcccccagtccggatttggcctctccggcgagggaggccggatcccctccggtggctcctcagcggtggacgacgcgacaagggcggcggtcagagggcagcaggaggcgtgggtggccgcggtaggagggcgagtgctgcggctggtctggcgatctgccggagctgtgggtgatggcctaggactgattgctaaagggacgatgcagccgaccggcgacgatcattcttgcgcgaattgggttctaacaaacgggagatttcgaagcgtgaggcaccgggtgatggtgagtagcccgcggccacgggtgtcagtcatcttcttcgccgggccgccgctacgggagcgactagcaccgctgccatggctggtggcggaggatggcgggcgccgccggtacagggagttcacctggcgggagtacaaggcttcagcctacaggaccaagctggctgagaacaggctatgtcactttgaaactgaagctgactga
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| Protein seq | MVVLAKGELEQIALPAAVQKAAPPLADVPEVDLGGGACRADAARAVVAACEGHGFFKVTGHGVPAGLLARVEAAAAAFFAMAQPEKEAAAAAAAAAAPGSPFGYGSKRIGCNGDLGWVEYLLLGVAAAAAAPLPAHGEASPSPSYGSFRDILNEYVVAVRAMMWEVLKLMAEGLGLKEKDALVRLVSHEESDSVLRVNHYPPHPELKQQGHGRLTGFGEHTDPQIISVLRSNDTSGLEISLRDGSWASPGGRIKLEELQGFLHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQPPAKPDGGKDGGGGAFYPLQHPAFGAPTGNRRRGGDASRRLRRRRRPEAAEPASLLADLAPSQPDQDEVALAALHQDEALAGAVVAPVEKAAGWGIRHRLPQSGFGLSGEGGRIPSGGSSAVDDATRAAVRGQQEAWVAAVGGRVLRLVWRSAGAVGDGLGLIAKGTMQPTGDDHSCANWVLTNGRFRSVRHRVMVSSPRPRVSVIFFAGPPLRERLAPLPWLVAEDGGRRRYREFTWREYKASAYRTKLAENRLCHFETEAD |
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| Function | Gibberellin 2-beta-dioxygenase [UniProtKB/Swiss-Prot:Q9XG83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0007210 | OsLiXu_05g0007210.01 | Chr05 | 6610691 | 6616833 | - | NAM | ||
| CDS seq | atggtggttttggcgaagggggagttggagcagatcgccctgccggcggcggtgcagaaggcggcgccgccgctggccgacgtgccggaggtggacctgggcggcggcgcctgcagggcggacgcggcgcgcgcggtggtggcggcgtgcgagggacacgggttcttcaaggtgacgggccacggcgtgccggcggggctcctggcgcgcgtggaggccgcggcggcggcgttcttcgcgatggcgcagccggagaaggaggcggcggcggcggcggccgccgccgccgcgccggggagcccgttcgggtacgggagcaagaggatcggctgcaacggggacctcgggtgggtcgagtacctcctgctcggcgtcgccgccgccgccgccgcgccattgcccgcgcacggcgaggcgtcgccgtcgccgtcgtacggctcgttccgcgatatcttaaatgagtacgttgtggcggtgagagcgatgatgtgggaggtgctaaagttgatggcggaagggctaggcctgaaggagaaagatgcgttggttaggctggtctcacacgaggagagtgactccgtgctgagggtgaaccactacccaccacaccctgagttgaagcagcaaggccatggcaggttaaccgggtttggagagcacaccgaccctcagatcatctcggtgctccgatccaacgacacctctggccttgagatctctttgcgtgatggtagctgggcttctccaggtggtagaattaaattagaggaactgcaaggttttcttcatgccgtgtcgctccgctccagggcaacacgggaggcgacccgaagccgccccgccgccggccttctctccctcgcctcccccacctcgccgccgcctgagcagccgccggcaaagccggacggcggcaaggacggcggtggcggggccttctaccccctccaacaccctgcgtttggggccccgacgggaaacaggcggaggggcggcgacgcgtcgaggcggctccggcgacgccgacggccagaggcagcagagccagcgtcgctgttagcggatctggccccctcgcagccagatcaggacgaagtggcgctggccgcgctgcatcaggacgaggcgctggctggggcagtcgtggcgccggtggagaaggccgctggatggggcattcgacaccggctcccccagtccggatttggcctctccggcgagggaggccggatcccctccggtggctcctcagcggtggacgacgcgacaagggcggcggtcagagggcagcaggaggcgtgggtggccgcggtaggagggcgagtgctgcggctggtctggcgatctgccggagctgtgggtgatggcctaggactgattgctaaagggacgatgcagccgaccggcgacgatcattcttgcgcgaattgggttctaacaaacgggagatttcgaagcgtgaggcaccgggtgatggtgagtagcccgcggccacgggtgtcagtcatcttcttcgccgggccgccgctacgggagcgactagcaccgctgccatggctggtggcggaggatggcgggcgccgccggtacagggagttcacctggcgggagtacaaggcttcagcctacaggaccaagctggctgagaacaggctatgtcactttgaaactgaagctgactga
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| Protein seq | MVVLAKGELEQIALPAAVQKAAPPLADVPEVDLGGGACRADAARAVVAACEGHGFFKVTGHGVPAGLLARVEAAAAAFFAMAQPEKEAAAAAAAAAAPGSPFGYGSKRIGCNGDLGWVEYLLLGVAAAAAAPLPAHGEASPSPSYGSFRDILNEYVVAVRAMMWEVLKLMAEGLGLKEKDALVRLVSHEESDSVLRVNHYPPHPELKQQGHGRLTGFGEHTDPQIISVLRSNDTSGLEISLRDGSWASPGGRIKLEELQGFLHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQPPAKPDGGKDGGGGAFYPLQHPAFGAPTGNRRRGGDASRRLRRRRRPEAAEPASLLADLAPSQPDQDEVALAALHQDEALAGAVVAPVEKAAGWGIRHRLPQSGFGLSGEGGRIPSGGSSAVDDATRAAVRGQQEAWVAAVGGRVLRLVWRSAGAVGDGLGLIAKGTMQPTGDDHSCANWVLTNGRFRSVRHRVMVSSPRPRVSVIFFAGPPLRERLAPLPWLVAEDGGRRRYREFTWREYKASAYRTKLAENRLCHFETEAD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0007210 | OsLiXu_05g0007210.02 | Chr05 | 6610527 | 6612980 | - | IsoSeq | ||
| CDS seq | agaattaaattagaggaactgcaaggttttcttcatgccgtgtcgctccgctccagggcaacacgggaggcgacccgaagccgccccgccgccggccttctctccctcgcctcccccacctcgccgccgcctgagcagccgccggcaaagccggacggcggcaaggacggcggtggcggggccttctaccccctccaacaccctgcgtttggggccccgacgggaaacaggcggaggggcggcgacgcgtcgaggcggctccggcgacgccgacggccagaggcagcagagccagcgtcgctgttagcggatctggccccctcgcagccagatcaggacgaagtggcgctggccgcgctgcatcaggacgaggcgctggctggggcagtcgtggcgccggtggagaaggccgctggatggggcagtcgcggcgcgggcggaggcgacgtcgctggcggcagggacgaggcagcgagcctgggcgccgctggatctggctcccccaggccggatccaatgcccgcagctgggccacgaaggaggccggctccggggcggcggcggcgg
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| Protein seq | RIKLEELQGFLHAVSLRSRATREATRSRPAAGLLSLASPTSPPPEQPPAKPDGGKDGGGGAFYPLQHPAFGAPTGNRRRGGDASRRLRRRRRPEAAEPASLLADLAPSQPDQDEVALAALHQDEALAGAVVAPVEKAAGWGSRGAGGGDVAGGRDEAASLGAAGSGSPRPDPMPAAGPRRRPAPGRRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr05 | 6610942 | 6612070 | - | OsLiXu_05g0007210.02 | OsLiXu_05g0007210.02,OsLiXu_05g0007210.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.610471 | 0.355079 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0208550 | RBH | 0.000000 | 0.000000 | 1.037110 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11810 | RBH | 0.330920 | 0.000000 | 1.327803 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0208550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007140 | RBH | 0.0 | 12.495873 | 1.290016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007180 | RBH | 0.0 | 4.239222 | 2.309050 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007080 | RBH | 0.000000 | 0.000000 | 0.838797 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007130 | RBH | 0.0 | 0.261591 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007220 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0100700 | RBH | 1.4368695 | 10.7202395 | 10.402416 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007080 | RBH | 0.0 | 0.248165 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0099500 | RBH | 3.19585 | 11.3254845 | 45.4042435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007140 | RBH | 0.0 | 13.287810 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007160 | RBH | 0.069288 | 7.294311 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006940 | RBH | 0.0 | 0.0 | 0.365595 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007180 | RBH | 0.0 | 0.0 | 15.057920 |
