Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0130100 | OGI:05005120 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:1752425-1755727 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAAACCGAGACGGCCATGGCGATCACACGCTGAGAAGCTAAGCTAGAGACCAAACACTCCCACACGTGCAGTCCATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCAAGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGCCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGCGTCGGCGTTGCCGTCGGTGTCGCCGCGGGTGTACGCGGCGGCGCAGTGCTGGAGGTCGCTGAACGCCACCGCGTGCGCGGCGTGCGTGGCGACCGCGCGCGACCGCGTCGTCGGGCGCTGCCTGCCGCGCGCCGCCGAGGGCTACGGGCTCAACGCCGGCTGCGTCGTCAGGTACTCCACGCAGCCGTTCTACTTGCCGGCGAACGCCGCCGCCGCCGCCGGGTCATCCAGTAAGTCCATCTAAATTAATCTCTTCCCTTTGAAATTTAGGACACGTCACATTTTTCTTGAGAAATTTCGTACCAACGTTGTCAAATTTGGTCTTTATCGTGGCAATTTGCTCATGAATGTTCACGGGGAATCTGTCAAAAAAGGAGATAAACTTTGACGGCCGGCGAGGTGCGTGCCGTGTCTGAATTTTGGAGATAGCAACAGGATCTGCTCAATTATTCATCTCAATTTTTTTTCAGAAAAAAGCTTCTGTTGATGGGAATTTAATTGTAAACAGAAAAGAAAATTGGTGTTGTCAGATTGTGAAGATGCAAATTCCGTAGAAAAACATTGTCCATTTCGAACAAATTGTAAAGAATCTGACGTTTTATTTCTGAAACTTTCTTTGCATGCAGCACGGCACATAGTTATCGTGGTGATCGCCTCAGTCTTCTGTGCACTGGCTGTCATCGGCATAGCATTGGTCTGGGCAAAAATGAGGAACAGAAGAAATGATCACCATGATGGTACATATGTGAACTTCAACATGATGCTATTACATTTTTACACACTGAAGTCTGAATCTCTGATGGAAGTCTTTAACTCTGTTGTGTAATTTTGGGATTTTCAGACATGGATGGTTCTAGTGAGATCATCCGCACCATCGCCGCATCGCAGCTCAGTTTCAAGTATGAAGAATTGTGCAAGGCGACCGACGACTTTAATCAGATCAACAAGCTTGGCCAGGGTGGATATGGATCAGTCTACAAGGTACAATGTCATATACTATATCTGAATTCTGAAACAACATTGATACAATGATCTTTATTAGGTTCTTCCTGAACTGTTGATCAGATTGTGTGCATGTATGTATGAAACGGTGATGATCAGATCAGATGTTCAGATGTACAACAGTAATTTGATTGCATCGGCTTGAATTTGCTCCTGACATGATGCTAGGGTGTGCTACTAGACGGCCGGGAGATTGCCGTAAAGCGCCTCTTCTTCAACACGCGGGAGTGGGCCGATCAGTTCTTCAACGAGGTGCGCCTTGTCAGTCAGGTGCAGCACAAGAATCTTGTCAAGCTGCTCGGATGCAGCATCGAGGGACCGGAGAGCCTCCTGGTCTATGAGTACCTCTGCAACACCAGCCTTGATCACTACTTGTTTGGTACTAAGCTAGAACACTGAAGAAGAATTCCTGCATTCTGAATTTTTGAACTTGCCATACTTGACAATGTAGATAGATTCAGATCTTTCATGGTTGATGTTGCAGATGCATTCAAGAAGACCGCATTGGATTGGGAACGGCGGTTCGAGATCATCCTTGGGACTGCAGAGGGTCTGTCATATCTCCACAATGCTTCTGAGATCAGGATCATACATCGGGACATAAAGGCAAGTAACGTACTGTTGGACGAGAGGTTCAGGCCTAAGATTGCCGATTTCGGTTTGGCGAGGAACTTCATGGAAGATCAAAGTCACCTCAGCACTGGCCTCGCGGGAACTTTGTAAGTCGTATCATTTAAAAATGTAGTGAATTTTTGTATTTAATTGGATGGAACAAGAATTTTTTGTCATCAAATTGTGCAATTTGTCTGAAAAAATGGTACTGACCATGCATTTTTATTTGTACAGTGGATATATGGCTCCTGAATACATTGTCCATGGGCAACTGACAGAGAAGGCTGACATCTACAGCTACGGTGTGCTAGTCCTCGAGATCATCACCGGTCGGAAGAGCCTCAACTCGGTTGCTTCATCAGCAGAAGGGCATTCCCTCATGTCACTGGTAATTTTGCTAAATTTCCATCCTATTGCAAAGTACTAGCACTGTAGCATTCCCGAAAAACCTAATGAAGTTACTCTACTGCTTCTTGCATTCTTCAGATATGGAAGCACTACAATGAAGGCACCCTGATGGAACTATTGGACCCAAACCTCCAAGAGCAATGCACGGAGGAGGGAGCTCTCAAGGTGTTCCATGTTGGACTACTATGTGCGCAAGCTTCACCGAACCTTAGGCCACCGATGTGGAAGGTGGTCGAGATGTTGGGTAGTAGGAACAATGAGCTTCCTCGGCCTACCCAGCCCCCATTCATCAACATAAAGGGGTCGAATGCGAAGAGCGACAGCTCGGGTTCTTCGTCTTTGAAGTCAAGCTCAGACAAGTCCCCCTTCTCGCTAAACCAGCTTTCAGTGAGTGGAGTACAGGCCAGGTAACAATGGTCTGAAGGACAATCTTGACATTTTTGTTCATTCCAAGATGTACTTCATTTTTTCAGTTAAAAGTTCTTTCATCTGATCATGGTGTAAAGTAGTCCTTGTAGAAAGCATCCTACTTGTAAGTAAGCATACAAGAAATTCTAATTTTTGTCAAACATTCAGAAAAATGAAGTTTTGACCTCTTGGACCATTGTGTCTG
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| CDS seq | ATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCAAGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGCCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGCGTCGGCGTTGCCGTCGGTGTCGCCGCGGGTGTACGCGGCGGCGCAGTGCTGGAGGTCGCTGAACGCCACCGCGTGCGCGGCGTGCGTGGCGACCGCGCGCGACCGCGTCGTCGGGCGCTGCCTGCCGCGCGCCGCCGAGGGCTACGGGCTCAACGCCGGCTGCGTCGTCAGGTACTCCACGCAGCCGTTCTACTTGCCGGCGAACGCCGCCGCCGCCGCCGGGTCATCCACACGGCACATAGTTATCGTGGTGATCGCCTCAGTCTTCTGTGCACTGGCTGTCATCGGCATAGCATTGGTCTGGGCAAAAATGAGGAACAGAAGAAATGATCACCATGATGACATGGATGGTTCTAGTGAGATCATCCGCACCATCGCCGCATCGCAGCTCAGTTTCAAGTATGAAGAATTGTGCAAGGCGACCGACGACTTTAATCAGATCAACAAGCTTGGCCAGGGTGGATATGGATCAGTCTACAAGGGTGTGCTACTAGACGGCCGGGAGATTGCCGTAAAGCGCCTCTTCTTCAACACGCGGGAGTGGGCCGATCAGTTCTTCAACGAGGTGCGCCTTGTCAGTCAGGTGCAGCACAAGAATCTTGTCAAGCTGCTCGGATGCAGCATCGAGGGACCGGAGAGCCTCCTGGTCTATGAGTACCTCTGCAACACCAGCCTTGATCACTACTTGTTTGATGCATTCAAGAAGACCGCATTGGATTGGGAACGGCGGTTCGAGATCATCCTTGGGACTGCAGAGGGTCTGTCATATCTCCACAATGCTTCTGAGATCAGGATCATACATCGGGACATAAAGGCAAGTAACGTACTGTTGGACGAGAGGTTCAGGCCTAAGATTGCCGATTTCGGTTTGGCGAGGAACTTCATGGAAGATCAAAGTCACCTCAGCACTGGCCTCGCGGGAACTTTTGGATATATGGCTCCTGAATACATTGTCCATGGGCAACTGACAGAGAAGGCTGACATCTACAGCTACGGTGTGCTAGTCCTCGAGATCATCACCGGTCGGAAGAGCCTCAACTCGGTTGCTTCATCAGCAGAAGGGCATTCCCTCATGTCACTGTCTTCAGATATGGAAGCACTACAATGA
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| Protein seq | MLAAAMQRRGSLAAAAAAFRCLLLVVVAAAADDAGGAAAKPVILATVCGNTTAADQEGFDVSFVNTLELIYQNVTRSGFGAAASGEGADTVYGLGQCMGYLSPTDCQLCYAQSRVKLPHCLPATGGRIYLDGCFLRYGADNFTAAATDASDTAVCSNATVSSPASFAATSAALLRNVTAAAPGARDYYYYSASSSSSASALPSVSPRVYAAAQCWRSLNATACAACVATARDRVVGRCLPRAAEGYGLNAGCVVRYSTQPFYLPANAAAAAGSSTRHIVIVVIASVFCALAVIGIALVWAKMRNRRNDHHDDMDGSSEIIRTIAASQLSFKYEELCKATDDFNQINKLGQGGYGSVYKGVLLDGREIAVKRLFFNTREWADQFFNEVRLVSQVQHKNLVKLLGCSIEGPESLLVYEYLCNTSLDHYLFDAFKKTALDWERRFEIILGTAEGLSYLHNASEIRIIHRDIKASNVLLDERFRPKIADFGLARNFMEDQSHLSTGLAGTFGYMAPEYIVHGQLTEKADIYSYGVLVLEIITGRKSLNSVASSAEGHSLMSLSSDMEALQ |
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| Function | Cysteine-rich receptor-like protein kinase 2 [UniProtKB/Swiss-Prot:Q9CAL3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0130100 | OsNip_05t0130100-00 | Chr05 | 1752425 | 1755727 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCGCCGCCGCCATGCAACGCCGGGGCTCCTTGGCCGCCGCCGCTGCTGCGTTCCGGTGCCTCCTCCTCGTCGTCGTCGCCGCGGCGGCCGACGACGCCGGTGGCGCCGCGGCCAAGCCGGTGATACTGGCCACGGTGTGCGGGAACACCACCGCGGCCGACCAGGAGGGCTTCGACGTCAGCTTCGTCAACACGCTGGAGCTCATCTACCAGAACGTCACGCGCTCCGGCTTCGGCGCCGCGGCCTCCGGCGAGGGCGCCGACACCGTCTACGGCCTCGGCCAGTGCATGGGCTACCTCTCGCCGACCGACTGCCAGCTCTGCTACGCGCAGAGCCGCGTCAAGCTGCCGCACTGCCTCCCGGCCACCGGCGGCCGGATCTACCTCGACGGCTGCTTCCTCCGCTACGGCGCCGACAACTTCACCGCCGCCGCCACCGACGCCAGCGACACCGCCGTCTGCTCCAACGCCACCGTCTCCTCGCCGGCGTCGTTCGCCGCGACGTCGGCCGCATTGCTGCGGAACGTCACGGCGGCCGCGCCGGGCGCCAGGGACTACTACTACTACAGCGCGTCGTCGTCGTCGTCGGCGTCGGCGTTGCCGTCGGTGTCGCCGCGGGTGTACGCGGCGGCGCAGTGCTGGAGGTCGCTGAACGCCACCGCGTGCGCGGCGTGCGTGGCGACCGCGCGCGACCGCGTCGTCGGGCGCTGCCTGCCGCGCGCCGCCGAGGGCTACGGGCTCAACGCCGGCTGCGTCGTCAGGTACTCCACGCAGCCGTTCTACTTGCCGGCGAACGCCGCCGCCGCCGCCGGGTCATCCACACGGCACATAGTTATCGTGGTGATCGCCTCAGTCTTCTGTGCACTGGCTGTCATCGGCATAGCATTGGTCTGGGCAAAAATGAGGAACAGAAGAAATGATCACCATGATGACATGGATGGTTCTAGTGAGATCATCCGCACCATCGCCGCATCGCAGCTCAGTTTCAAGTATGAAGAATTGTGCAAGGCGACCGACGACTTTAATCAGATCAACAAGCTTGGCCAGGGTGGATATGGATCAGTCTACAAGGGTGTGCTACTAGACGGCCGGGAGATTGCCGTAAAGCGCCTCTTCTTCAACACGCGGGAGTGGGCCGATCAGTTCTTCAACGAGGTGCGCCTTGTCAGTCAGGTGCAGCACAAGAATCTTGTCAAGCTGCTCGGATGCAGCATCGAGGGACCGGAGAGCCTCCTGGTCTATGAGTACCTCTGCAACACCAGCCTTGATCACTACTTGTTTGATGCATTCAAGAAGACCGCATTGGATTGGGAACGGCGGTTCGAGATCATCCTTGGGACTGCAGAGGGTCTGTCATATCTCCACAATGCTTCTGAGATCAGGATCATACATCGGGACATAAAGGCAAGTAACGTACTGTTGGACGAGAGGTTCAGGCCTAAGATTGCCGATTTCGGTTTGGCGAGGAACTTCATGGAAGATCAAAGTCACCTCAGCACTGGCCTCGCGGGAACTTTTGGATATATGGCTCCTGAATACATTGTCCATGGGCAACTGACAGAGAAGGCTGACATCTACAGCTACGGTGTGCTAGTCCTCGAGATCATCACCGGTCGGAAGAGCCTCAACTCGGTTGCTTCATCAGCAGAAGGGCATTCCCTCATGTCACTGTCTTCAGATATGGAAGCACTACAATGA
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| Protein seq | MLAAAMQRRGSLAAAAAAFRCLLLVVVAAAADDAGGAAAKPVILATVCGNTTAADQEGFDVSFVNTLELIYQNVTRSGFGAAASGEGADTVYGLGQCMGYLSPTDCQLCYAQSRVKLPHCLPATGGRIYLDGCFLRYGADNFTAAATDASDTAVCSNATVSSPASFAATSAALLRNVTAAAPGARDYYYYSASSSSSASALPSVSPRVYAAAQCWRSLNATACAACVATARDRVVGRCLPRAAEGYGLNAGCVVRYSTQPFYLPANAAAAAGSSTRHIVIVVIASVFCALAVIGIALVWAKMRNRRNDHHDDMDGSSEIIRTIAASQLSFKYEELCKATDDFNQINKLGQGGYGSVYKGVLLDGREIAVKRLFFNTREWADQFFNEVRLVSQVQHKNLVKLLGCSIEGPESLLVYEYLCNTSLDHYLFDAFKKTALDWERRFEIILGTAEGLSYLHNASEIRIIHRDIKASNVLLDERFRPKIADFGLARNFMEDQSHLSTGLAGTFGYMAPEYIVHGQLTEKADIYSYGVLVLEIITGRKSLNSVASSAEGHSLMSLSSDMEALQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.426266 | 0.109286 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0296000 | SBH | 0.266915 | 0.0 | 0.673085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03920 | RBH | 0.284292 | 0.072492 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0130100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002220 | RBH | 0.000000 | 0.000000 | 1.523497 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002240 | RBH | 0.106813 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002270 | RBH | 0.365637 | 0.0 | 0.866066 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002260 | RBH | 0.911877 | 4.506908 | 1.723716 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0027000 | RBH | 0.8174135 | 3.045587 | 8.9230435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002220 | RBH | 0.0 | 0.069859 | 0.105756 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0027300 | RBH | 3.3018895 | 5.943844 | 1.3182775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002130 | RBH | 0.160352 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002230 | RBH | 2.064111 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002250 | RBH | 0.558512 | 0.363914 | 0.537983 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002280 | RBH | 0.000000 | 1.811847 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002090 | RBH | 0.0 | 0.0 | 0.295039 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002290 | RBH | 0.000000 | 0.000000 | 1.754596 |
