Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0107000 | OGI:05000950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:375945-378250 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGAAATTTTATGTCTTGTCATCCGCAAGAAATCCATTCTACAAATTACAAATACTTATAATTTACTTTATCAGATATTGATATCACATTTAACTTAATATAACATATATCCCTTTCTTCTATGCCACAAAAGACAAAGCCCAAACCAGATGAACGCAGGCGCTAGTTATCGAGAGCATTTATAAAGTGAATGAGAATTCTCTCTATTCATATAATTGTCTTCCACTGGCACTAAGCAAGTGTATATTCAGAGACTTGCTGTTTGGTGCATATGTATGTATGTGATGTGCACATATCAGCTCAAAGCCTGAAAACATTTCTGATCCAACCGACTCTTCAGTTGCTTTGGACTGATAGTGAGCACACTCGAGTATCCACTTCTTGAAACCCTGTCAGACATGTGGGTTATCTACATAGCCTCCTGAACACCCCTCAAAAAATCAAAACCATAAGCCACTTGAAATCGGCTAGTTGCCCCCAAAAAATTCTGTACAGCTTCAAATCAATCTGTGAGTGTACACTGAGCTATTTAACTCCAGATTCAATTTGCCCATTTACTCTGCTTGTTAACTTCAGTCTTGACACCAAGCCATCCAAGATTCCATATATTTCTTGATTCTCAGGTTGCCTCTCCCTAAATTGATGAAGAATCTCGTTTAAGTTCACCAGGCGATGTCCAGGACTGAGCTTCTCGTCTCTTTCCTTTATGATAGCCTTCACCCTATGAACATCTTCCCATCTCCCCGCAGAAGCATACACATTGCACAGCAGGGCATAGTGAACACTATTGTTTGGTTCCAACTCAATCAACCTCAGGACTATCCGCTCCCCCAGTTCCCACTCCCCTCGGAACCGGCACAACCCAAGCAAACCACCCAATGCATGTGCCTTCAACTCCTCTGGCATACTCGTTAAGAGACCCTCAGCTTCTTCCAGAAGCCCAACACTTGCATACAGATTGGCCATGCACCAATAATGTGCAAATGTTGGCTTGATGTTGTACATGGTGCTCATCTGCTCAAAATATGCCTTCCCGTCATCCAAGAGAGCTAGACGGGTACACGCGCAGAGGACACCAATGAAAGTGACTTCGTCTGGTAGCAGCCCATGTTGATCGTCTAGATCATTCCTTGAAAAGGTAGGTGTAAGATCAATAAGGAACTAGAAATAACATGGAACAAAATAAGTAGCAGGATATTGCTATCTTGACCAATCTCAGAAATCAGAACCCACCTTGTCCAATCATGTCATGAAACAATCGAATCCCATCACCAGGTTCTCCATACACACAATGGCCGATGATCATTGCGTTCCAGCAAACAACATTCCTAAAGCTCAGCCGATCAAACACCTTCCTCGCAGCATCCGCATTCCGACACTTTCCATACATATCGACCAATGCAGTCGAGAACAGCAGGTTACGCTCCTCAAAACGGCGCAGGAAAGCACAATGTACCTCCTTCCCAGCCCCCAACCTGCCCAGCCTTGCGCACGCAGTGGCTGCCCCAACCATTGCGACAGCTGTGCCCCTGACCCCAATCTCCGCCATCCACCGCACCACCTCCAGAGCTTGCTCGGGGCGCTTCACCTTCACATACCCGTTGATCATGATGTTCCATGACACCACATTCCTCAGAAGCATTCCGTCGAACAGGTGTCGTGCGGCGTCAATGCCGTCGACGGCGCCAGCGTAGGCAGTCATCATGGTGTTGTAGGAGGCGACGTCCCTGAAGGGCATTTCGTCGAACAGGTTGCGGGCGCAGGGGAGGAGGGTGGCGGCGGCGTAGAAATGGAGGAGGGCGTTGGCGGCGTGGAGCGGGGGCGAGAAGAGGAGGCCGCGGCGGAGCAGCTGCGCGTGGAGGGCGAGCGCGGAAGGAAGATGGAGACGCGGGGAGGAGGAGGAGGAGGCTTTGGAGAGGAGCGTGGGGAAGGAGAAGCGGGCAGGGAAGGCGGGGTGGTGGGAGCGGAGGAGGGCGGCGAAGAGGGAGAGAAGGGCGGAGAAGGGGAGGCGCGGGGCGAGGGCGCGGAGGGCGTTGTCGAGGGAGAAGAGCGGGAGGGGTGGAGGGAGGTGGTGGAGGAGGAGGCGGAGGAGGTGGGAGTGGGCGTGGGCGTGGGCGTGGGCAGGTCGCGAGGCGGAGGTGGCGGTGGAGGTGGCGGCGGAGAGGAGGATGCCGGCGGTGGTGCGGTGGCCGAGGAGGAGGCCGCGGCGGAGGAGGAAGGCGTGGGCGCAGAGGACGGCGTGGTGGGTGCGGAGGCCGCGGAGGAAGGCTTGGAGCTCGCCGGGGTCCGGCCGGGATGCCATCACT
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| CDS seq | ATGGCATCCCGGCCGGACCCCGGCGAGCTCCAAGCCTTCCTCCGCGGCCTCCGCACCCACCACGCCGTCCTCTGCGCCCACGCCTTCCTCCTCCGCCGCGGCCTCCTCCTCGGCCACCGCACCACCGCCGGCATCCTCCTCTCCGCCGCCACCTCCACCGCCACCTCCGCCTCGCGACCTGCCCACGCCCACGCCCACGCCCACTCCCACCTCCTCCGCCTCCTCCTCCACCACCTCCCTCCACCCCTCCCGCTCTTCTCCCTCGACAACGCCCTCCGCGCCCTCGCCCCGCGCCTCCCCTTCTCCGCCCTTCTCTCCCTCTTCGCCGCCCTCCTCCGCTCCCACCACCCCGCCTTCCCTGCCCGCTTCTCCTTCCCCACGCTCCTCTCCAAAGCCTCCTCCTCCTCCTCCCCGCGTCTCCATCTTCCTTCCGCGCTCGCCCTCCACGCGCAGCTGCTCCGCCGCGGCCTCCTCTTCTCGCCCCCGCTCCACGCCGCCAACGCCCTCCTCCATTTCTACGCCGCCGCCACCCTCCTCCCCTGCGCCCGCAACCTGTTCGACGAAATGCCCTTCAGGGACGTCGCCTCCTACAACACCATGATGACTGCCTACGCTGGCGCCGTCGACGGCATTGACGCCGCACGACACCTGTTCGACGGAATGCTTCTGAGGAATGTGGTGTCATGGAACATCATGATCAACGGGTATGTGAAGGTGAAGCGCCCCGAGCAAGCTCTGGAGGTGGTGCGGTGGATGGCGGAGATTGGGGTCAGGGGCACAGCTGTCGCAATGGTTGGGGCAGCCACTGCGTGCGCAAGGCTGGGCAGGTTGGGGGCTGGGAAGGAGGTACATTGTGCTTTCCTGCGCCGTTTTGAGGAGCGTAACCTGCTGTTCTCGACTGCATTGGTCGATATGTATGGAAAGTGTCGGAATGCGGATGCTGCGAGGAAGGTGTTTGATCGGCTGAGCTTTAGGAATGTTGTTTGCTGGAACGCAATGATCATCGGCCATTGTGTGTATGGAGAACCTGGTGATGGGATTCGATTGTTTCATGACATGATTGGACAAGACGATCAACATGGGCTGCTACCAGACGAAGTCACTTTCATTGGTGTCCTCTGCGCGTGTACCCGTCTAGCTCTCTTGGATGACGGGAAGGCATATTTTGAGCAGATGAGCACCATGTACAACATCAAGCCAACATTTGCACATTATTGGTGCATGGCCAATCTGTATGCAAGTGTTGGGCTTCTGGAAGAAGCTGAGGGTCTCTTAACGAGTATGCCAGAGGAGTTGAAGGCACATGCATTGGGTGGTTTGCTTGGGTTGTGCCGGTTCCGAGGGGAGTGGGAACTGGGGGAGCGGATAGTCCTGAGGTTGATTGAGTTGGAACCAAACAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGCCTGGTGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTGAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAG
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| Protein seq | MASRPDPGELQAFLRGLRTHHAVLCAHAFLLRRGLLLGHRTTAGILLSAATSTATSASRPAHAHAHAHSHLLRLLLHHLPPPLPLFSLDNALRALAPRLPFSALLSLFAALLRSHHPAFPARFSFPTLLSKASSSSSPRLHLPSALALHAQLLRRGLLFSPPLHAANALLHFYAAATLLPCARNLFDEMPFRDVASYNTMMTAYAGAVDGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGEPGDGIRLFHDMIGQDDQHGLLPDEVTFIGVLCACTRLALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALGGLLGLCRFRGEWELGERIVLRLIELEPNNSVHYALLCNVYASAGRWEDVHRVKAIIKERDEKLSPGHRLVNLNEILHQFRERQPENQEIYGILDGLVSRLKLTSRVNGQIESGVK |
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| Function | Pentatricopeptide repeat-containing protein At3g51320 [UniProtKB/Swiss-Prot:Q0WVU0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0107000 | OsNip_05t0107000-01 | Chr05 | 375945 | 378250 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCATCCCGGCCGGACCCCGGCGAGCTCCAAGCCTTCCTCCGCGGCCTCCGCACCCACCACGCCGTCCTCTGCGCCCACGCCTTCCTCCTCCGCCGCGGCCTCCTCCTCGGCCACCGCACCACCGCCGGCATCCTCCTCTCCGCCGCCACCTCCACCGCCACCTCCGCCTCGCGACCTGCCCACGCCCACGCCCACGCCCACTCCCACCTCCTCCGCCTCCTCCTCCACCACCTCCCTCCACCCCTCCCGCTCTTCTCCCTCGACAACGCCCTCCGCGCCCTCGCCCCGCGCCTCCCCTTCTCCGCCCTTCTCTCCCTCTTCGCCGCCCTCCTCCGCTCCCACCACCCCGCCTTCCCTGCCCGCTTCTCCTTCCCCACGCTCCTCTCCAAAGCCTCCTCCTCCTCCTCCCCGCGTCTCCATCTTCCTTCCGCGCTCGCCCTCCACGCGCAGCTGCTCCGCCGCGGCCTCCTCTTCTCGCCCCCGCTCCACGCCGCCAACGCCCTCCTCCATTTCTACGCCGCCGCCACCCTCCTCCCCTGCGCCCGCAACCTGTTCGACGAAATGCCCTTCAGGGACGTCGCCTCCTACAACACCATGATGACTGCCTACGCTGGCGCCGTCGACGGCATTGACGCCGCACGACACCTGTTCGACGGAATGCTTCTGAGGAATGTGGTGTCATGGAACATCATGATCAACGGGTATGTGAAGGTGAAGCGCCCCGAGCAAGCTCTGGAGGTGGTGCGGTGGATGGCGGAGATTGGGGTCAGGGGCACAGCTGTCGCAATGGTTGGGGCAGCCACTGCGTGCGCAAGGCTGGGCAGGTTGGGGGCTGGGAAGGAGGTACATTGTGCTTTCCTGCGCCGTTTTGAGGAGCGTAACCTGCTGTTCTCGACTGCATTGGTCGATATGTATGGAAAGTGTCGGAATGCGGATGCTGCGAGGAAGGTGTTTGATCGGCTGAGCTTTAGGAATGTTGTTTGCTGGAACGCAATGATCATCGGCCATTGTGTGTATGGAGAACCTGGTGATGGGATTCGATTGTTTCATGACATGATTGGACAAGACGATCAACATGGGCTGCTACCAGACGAAGTCACTTTCATTGGTGTCCTCTGCGCGTGTACCCGTCTAGCTCTCTTGGATGACGGGAAGGCATATTTTGAGCAGATGAGCACCATGTACAACATCAAGCCAACATTTGCACATTATTGGTGCATGGCCAATCTGTATGCAAGTGTTGGGCTTCTGGAAGAAGCTGAGGGTCTCTTAACGAGTATGCCAGAGGAGTTGAAGGCACATGCATTGGGTGGTTTGCTTGGGTTGTGCCGGTTCCGAGGGGAGTGGGAACTGGGGGAGCGGATAGTCCTGAGGTTGATTGAGTTGGAACCAAACAATAGTGTTCACTATGCCCTGCTGTGCAATGTGTATGCTTCTGCGGGGAGATGGGAAGATGTTCATAGGGTGAAGGCTATCATAAAGGAAAGAGACGAGAAGCTCAGTCCTGGACATCGCCTGGTGAACTTAAACGAGATTCTTCATCAATTTAGGGAGAGGCAACCTGAGAATCAAGAAATATATGGAATCTTGGATGGCTTGGTGTCAAGACTGAAGTTAACAAGCAGAGTAAATGGGCAAATTGAATCTGGAGTTAAATAG
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| Protein seq | MASRPDPGELQAFLRGLRTHHAVLCAHAFLLRRGLLLGHRTTAGILLSAATSTATSASRPAHAHAHAHSHLLRLLLHHLPPPLPLFSLDNALRALAPRLPFSALLSLFAALLRSHHPAFPARFSFPTLLSKASSSSSPRLHLPSALALHAQLLRRGLLFSPPLHAANALLHFYAAATLLPCARNLFDEMPFRDVASYNTMMTAYAGAVDGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGEPGDGIRLFHDMIGQDDQHGLLPDEVTFIGVLCACTRLALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALGGLLGLCRFRGEWELGERIVLRLIELEPNNSVHYALLCNVYASAGRWEDVHRVKAIIKERDEKLSPGHRLVNLNEILHQFRERQPENQEIYGILDGLVSRLKLTSRVNGQIESGVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111431 | 0.114275 | 0.543797 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01635 | RBH | 0.075355 | 0.076859 | 0.139984 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0107000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000540 | SBH | 0.035285 | 1.158555 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000530 | SBH | 0.028098 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000560 | SBH | 0.276210 | 0.0 | 0.269943 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000530 | RBH | 0.0 | 0.015907 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000530 | SBH | 0.000000 | 0.000000 | 1.182229 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0005600 | SBH | 0.245111 | 0.700917 | 0.461871 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000540 | SBH | 0.000000 | 0.041616 | 0.123638 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0006100 | SBH | 0.191062 | 0.433139 | 1.3694385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000570 | RBH | 0.0 | 0.033091 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000510 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000530 | SBH | 0.327111 | 1.357898 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000550 | SBH | 0.000000 | 0.051043 | 0.125783 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000560 | RBH | 0.0 | 1.464198 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000510 | SBH | 0.0 | 0.0 | 0.260729 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000560 | RBH | 0.0 | 1.137890 | 0.561856 |
