Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_05g0000550		OGI:05000950 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr05:361681-371659		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		OsFbox241, Os_F0593, OsFbox242, Os_F0706, -
DNA seq		ctacgccatcctgtggcacactgggtgcccaaaaaaaatcaatcttcccctgcttggcatttcaaattttgggattttagaatcaatatgtaaagaacttcaaattacagggaactttgcattctaaaccccatgatataacaatatcagaattcaaaattcaaaactcgcatgtttcgaacaattactagtactaacctattgttatctctatagatgaggagaatccctgcaggagttgctgtcttaacagatccttctctgcctcattgttggggaatatagttctggacagagatggcgtattgagataaataccatcgcaatcttcgcacggttccttatcatgcaagtgaattcgctgtagccccacagctctctgaatgacaagccttatgtacttgatcagattctcagtggtctcaaagccgtttatatccagcaacctcaaggtcttatgcttgatgctttcagatgatgcttcccacacaacattgcttctgtcagccctgtccttaaagccattctcgtcacatatgtggagagatatctacaaggagttaatacgtagtagccaggattattgcattgtcactcacagattttgtaagttacaggaacaggcaatatatatgtatgttgagcaggaaacatatttatcatgtgtggtttaccttaacatgaaatcgctcgaggaagggtgcgccttcaaggacaaagagagtccagtcgaggccacaatcaagactaatgctgcaaagatatacattcctaagattgcggaatatggggaagagtttcttgggctcttctggcaggatccaaacctgcagtcagcaaataaacaagaaattagcaccaacatcacatcgtatgtaagccaggtggaatggatccattagaaacagttaatcctcatagcatcagaggaccaatcaaatgaatgaatgcaggaaatcaaacagttactgtggcagtacattaccatctcatcctggaagtccagatgcaaactagttagagttggcacggtcgacagccagtcgctgagcttgaatggcagctgcatcttgtggcaggtggaagagaaacgtatccggtcaagcattgggacgcagccgaaacaaacaggaggattggcacccacccatgtatcacagtccacgcatttcagcttgggagcgttgatgagctcaaccttgatgtaactgcagaaggccatcgtcagcgtgctgagctgcgagtttggtgcatcgattctgagcacagacctcttgccattatcgcaatcctgcagggtgaggtgctgcagctggaggcaggaggctaggaggttggggatgtctgaatccccaaacctgagagcccacagagagaggcttgtcagtcgcctgaatgcattggggtaagcttgaaagaaggacatgaagcgtctcccatatcgtgccaggtgtttctcggtacaaagcagctcaggcacctcggtcaggatggaaaaggaaaggacctcaatcttgcttgctctgccaccggcactctgaactgcatcctcaagcatgcgcccaacggagtgcaggtaagggtcagtgagatagaagcacaggtgcagtgtcctgatgatgatgagttgagggctttcagctcttggagccaacaatgtcctcattgcttgggtgtaccttgacatggccaccttgactcgagtcatggtgttccttttgagtgaaggagcagaccggcgtggtatgaaatcggcaacatcgatttcaagatggttcatggattggagaagatgggtccatcttcttgcaagagtggtggtccgggctgcagtcggcagttgcagccgttggaggatgtcaatcaaaatttcatccgggagcgcgctgagcctgtcatcgacgacttggcactgctggtaatggagaaagatacattatttgtcaataccgatggattggccttaagaaaaacaaagatgaatgaatgaaagcagaaatgtttccaggtatttgagaggcatatatatcagggtatttcatttcatagtgtatggcataatcaggaggtataaggccttgtttagttccaaatttttttttccaaaaacatctcaccaaatctttggacatatgtatagagcaataaattagataaaatgaaaaactaattgcaaagaccgtgtttagattcaaacttttttcttcaaacttccaacttttctgtcacatcaaatgtttggccacatgcattaaatgtggacgaaaaaaatcaattgcatagtttgcatgtaaatcacgagacgaatcttttgagcataattacgctatgatttaacaaggtgatgctacaataaatatttgctaatgacggattaattagacttaataaatttgtctcctagttttcaggtgagtaatgaaattagtttttttattcgtgtccaaaaatctcttccgacatccggtcaaacgtttgatgtgacacccaaaaatttttcttttcgcgaactaaactagccaaggaccatccatagaaaatctcaatataagagggggggggggggggcttacagcgttattgggcattgccgactccatgagcttcctgcctgggtgaatgagggaagggatcgacgagatttgcaggggggacaaaaactactccactctaatggaggccggagtgtcaatttgggcagcgcaggacgatgctcttgtttataagtatctgtcagcttcaggatcgacgcgaaggaattcggagaccgaagcggactccttatttgattggaaatccatatccatgtataaatataagtataaattgtttactaatttgtttaggaggaggagcaacgcgaaactgtaggagatgacacaatcaggattgctaattcgcgtgcgagctgtgcctcctcccccacgccctttttttttcgttttttcaacgattttttcacttttttctgattattttttaatctttagcacatgtgtttttcaaatgttttgagttgaaagtttttaaatctaaacttgaaaattttcaaatcttaacttaaaagtttttcaaatctggacttgaaacttttcaaatctcgagttgacagttttcgtctgagttgaaagttttaaaatctcgagttgaaaatttcaaatctgtgtttaaagttttcaaatcttgaattgaaacttttcaaatccgagttgaaagttttcaaactgggttgaaagttttcagatgaaaagttgaacattttcaaaatttgacttaaaaaatttaaatttcaagttgaaagtttttaaatctgggtttaaaattttcaaaattgacttcagatatagattttctttttaatttgttagttaaaaaaaaatctcgcagaaaaaagaaaatcttatctactgctgtcattatctcaaattatcgttatataagactaatactaatataaccaccttatcccaacaaaaacgcgcgccggcgcgccaactagcaatcccaacaggatcagtgcgcctattggcttctaaggagcattctattatacagaaaataagtgtgtcgattttatagcccgtatatttgatttcatgttattaaaaagcattatctttgttgaaaaatgattgtttatctgtataattgtattttcatttttatagatatatagtttggaaaaacaatgataaaatatgtgtaaaggagtttgtgttgattttcaaaatgacattattttaagtacaggggcagtataaattttgcaaagttttataagaattagttcagttttatccaacttagaaaaatacagtacattcaaataaaatttgcaatgaatttttaagtactaatttaacatatcaaaccacattattatgaaaattcttaaactctctccttttttttccactctattcatggtttctttatttatgaacaattatagttgagttttctattaaatgataaaattggtgatggcattttcctagaagtgttccggattttatttaaaggagctctgatgctcctcatttcttcatagtaccacatgacattgccaaagtatagcatatgtgccataactatacacacgtatttaccatgacgtatgggtagtctttcttcaaaacagttaagcccccatgatcattctaaatgccaaattatatagtactttccatatacaaatgtttccactcttttctctgccccgggaggacaggaggtctgaagctgcaagcctacaccaacaacgccaaagctctctcactccagttgttagctataatctctctactctagagaatacttttttctccatgccatttttcttctcaagattattccttgatttatttggaatgctggtcaggatacaagtgagaatttgagatgagatcagccaggagcaaacatttcaggatactgcttgcaaatgatacggcaacatggacaattggttacagcgatacacaaaataagggggaaatacaagacaatcacctcataatatcagaacaacgccatagtacatgtccggatttaacaaagaaatgtaccatatgacccaaataaagttcttgtgcgctgtaagttaagagagaaattcttatataccgttggtaaaggtagtaatcaattctacgtaaagagaaaccttccatgtcaccaccaagctaactttaaatcttctacgccatcaccttcagatgactcctgtgtggcactgactgcccgaaaaaaaatcagtcttcccctgcttggcatttcaaattttgggattttagaatcaataatgtaaagaattttgaaattacaggaaactttgcattctgaaccccatgatataagaatatcaaaattcaaaattttcatgtttagaacaattactggcatgaaaagaaaatctaacaattactagtaacaacctattattatttctatagacgatgagaatccctgcaggagttgctctcttagtagatccttctcttgctcattgttagggaatctagttctggacagagatggcgtattgagataaatatcatcgcagtcttcacatggttccttctcatgcaagtgaattctctgtaaagcgatagctcgctgaatggcgagccttatgtacttgatcagattctcttctgtctcaaagcctattatatccaacaacctcaagtttttatgcttgatgatgtcagatgatgcttcccacacaacattactactgccagcattgtgctcaaaaccatcccccccacatatgtggtgagatatctacaaggaatacataattagtattggccaaagttaaactattgcacatatttattttgcacgtacaggtacagaaggcacatgcatataataagtgtatgttgggcaggagcatatatattatcatgcatggtttaccttaacatgaaaactcttgagggagggtgcgccttcaaggacaaacagtgtccagtcgaggccactgtcattactaatgttgtaaagatatacatccttaagattgcgaaatatggggaatagtttcttcggctcttctggcatgatccaaacctgcaggcagcaaaataaacaagaaatcaccaacatcaaaacatatacatggaagccatgaatatgcatgcaggaataaaacagatgaaggtgcattaccatctcatattggaagtccagatgcaaactagttagagttggcacagtggacagccagctgctcagcacgaatggttgctgcatcttaaggcaggtggaagagaagcgtatcttgtcaagcagtgggacgcaaccaaaataaacaggagggttgacacccacccatgtatcacaatccactgattcaagctttggaacgtggacgagttcaaccttgatgtaactgcagaagatcatcctcaatgtcctgagctgtgagcatggtgatgcgtcaatcttgagcacagagttgcgaccgctatcgcaaagcccgtagaaggaggtgctgcagctggtggcaggagcctagtaggcttgggatatctgaatcccgaaacctgagggcccatagagagaggcttgttaggcacctgaatccattggggcaagcctgaaagaaggacatgaagcgtcgtccgtatcgtgacatctgtttctcggtgcagtgcacctcggacacctcattcagaatggcaaagtcaaggacctcaatcttgctggcactggcactctgaaccgcatcgtcgaccatgcgggcaatggagagcaggtatgagtctgtggggtagaagcgtagatgcatgatccttatggtccgatcagggtcaattgtaggagctagcaatgtccttagtgcttgggtgtaccacgacatggccatgcttcgagccacattgtgcctagtgaggatgcatggtacaaattcattgatatctattttgagatgtgtcatggatgggaaaagatgggtccatcgccttgcgaggatggtggtctgtgctgaagtgcgcagcggcaggcgttggaggatgtcgatcgaaatttcatctgggagggcgctgagcctatcgtcatcatcatcattggatactagttcatcaatgacctggtgctgcaggcaggcaaaaagagaagccaatgctatctcaatacctaaccaggtcctagctagtttattaagaaaaagaaactatgtacaaggatgaataaattaagtaacagaggatcaaggagggcttacagcgttattattgggcgtagcaacctccatgagctgcctgcctgcgtggatgaagggaagatcaacgagacgagattatacttgcatgcagtgcagagaaaaagaaaccaaaaccagcaagtatttggcaggaagaggcaggggctccatccaatccaatgtagagatagatagacagaacagaacggtggtctttctgatttcaggttcatcgtaatctacctctagttcggttggattaagctgaaaccgattgggaatgtgtaagcaaacaaactagggttcttacggattccatcttgattcttgactattatattatataattatgcacccaaaaaaagggggggaaaatccaactgactggcctgcgggagaggtaggaggagggagggaagtggtaggaactcaccgacgacgacgacggcggcggcggcggaagcgtcgactgtgacggcgcgcggcgcggggtagcacaagggcacttggggatcggagggcgggggaggaagagaggacttgagagtacaaggaggtgaccagcgatgacgattgacgacgagcttcttctcttttttttattccttcctttttttttctctttagttctacttaaaagtaggagtatatgtatggccatctctcttcagtcttaactactacgttaacatcaatatgaatatcaatatgaatgtggaaattactagaataacttacattgtgaaacggagggagtagtagtaaaaattgaaatctcatctcaacctatgagtcaataatttcacgtctcttctacttgttcatcagcatactaatagaaaaaaaatcatgttttatttactagtagtatctctataaactataatcaattccatttgttcaatagaaattattcatgtatctttactttactagtatgtcagaaattttatgtcttgtcatccgcaagaaatccattctacaaattacaaatacttataatttactttatcagatattgatatcacatttaacttaatataacatatatccctttcttctatgccacaaaagacaaagcccaaaccagatgaacgcaggcgctagttatcgagagcatttataaagtgaatgagaattctctctattcatataattgtcttccactggcactaagcaagtgtatattcagagacttgctgtttggtgcatatgtatgtatgtgatgtgcacatatcagctcaaagcctgaaaacatttctgatccaaccgactcttcagttgctttggactgatagtgagcacactcgagtatccacttcttgaaaccctgtcagacatgtgggttatctacatagcctcctgaacacccctcaaaaaatcaaaaccataagccacttgaaatcggctagttgcccccaaaaaattctgtacagcttcaaatcaatctgtgagtgtacactgagctatttaactccagattcaatttgcccatttactctgcttgttaacttaagtcttgacaccaagccatccaagattccatatatttcttgattctcaggttgcctctccctaaattgatgaagaatctcgtttaagttcaccaggcgatgtccaggactgagcttctcgtctctttcctttatgatagccttcaccctatgaacatcttcccatctccccgcagaagcatacacattgcacagcagggcatagtgaacactattgcttggttccaactcaatcaacctcaggactatccgctcccccagttcccactcccctcggaaccggcacaacccaagcaaaccacccaatgcatgtgccttcaactcctctggcatactcgttaagagaccctcagcttcttccagaagcccaacacttgcatacagattggccatgcaccaataatgtgcaaatgttggcttgatgttgtacatggtgctcatctgctcaaaatatgccttcccgtcatccaagagagctagacgggtacacgcgcagaggacaccaatgaaagtgacttcgtctggtagcagcccatgttgatcgtctagatcattccttgaaaaggtaggtgtaagatcaataaggaactagaaataacatggaacaaaataagtagcaggatattgctatcttgaccaatctcagaaatcagaacccaccttgtccaatcatgtcatgaaacaatcgaatcccatcaccaggttctccatacacacaatggccgatgatcattgcgttccagcaaacaacattcctaaagctcagccgatcaaacaccttcctcgcagcatccgcattccgacactttccatacatatcgaccaatgcagtcgagaacagcaggttacgctcctcaaaacggcgcaggaaagcacaatgtacctccttcccagcccccaacctgcccaaccttgcgcacgcagtggctgccccaaccattgcgacagctgtgcccctgaccccaatctccgccatccaccgcaccacctccagagcttgctcggggcgcttcaccttcacatacccgttgatcatgatgttccatgacaccacattcctcagaagcattccgtcgaacaggtgtcgtgcggcgtcaatgccgtcgacggcgccagcgtaggcagtcatcatggtgttgtaggaggcgacgtccctgaagggcatttcatcgaacaggttgcgggcgcaggggaggagggtggcggcggcgtagaaatggaggagggcgttggcggcgtggagcgggggcgagaagaggaggccgcggcggagcagctgcgcgtggagggcgagcgcggaaggaagatggagacgcggggaggaggaggaggaggctttggagaggagcgtggggaaggagaagcgggcagggaaggcggggtggtgggagcggaggagggcggcgaagagggagaggagggcggagaaggggaggcgcggggcgagggcgcggagggcgttgtcgagggagaagagcgggaggggtggagggaggtggtggaggaggaggcggaggaggtgggcgtgggcgtgggcgtgggcaggtcgcgaggcggaggtggcggtggaggtggcggcggagaggaggatgccggcggtggtgcggtggccgaggaggaggccgcggcggaggaggaaggcgtgggcgcagaggacggcgtggtgggtgcggaggccgcggaggaaggcttggagctcgccggggtccggccgggatgccatcactgctggacttgccggcgccat 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CDS seq		atggcgccggcaagtccagcagtgatggcatcccggccggaccccggcgagctccaagccttcctccgcggcctccgcacccaccacgccgtcctctgcgcccacgccttcctcctccgccgcggcctcctcctcggccaccgcaccaccgccggcatcctcctctccgccgccacctccaccgccacctccgcctcgcgacctgcccacgcccacgcccacgcccacctcctccgcctcctcctccaccacctccctccacccctcccgctcttctccctcgacaacgccctccgcgccctcgccccgcgcctccccttctccgccctcctctccctcttcgccgccctcctccgctcccaccaccccgccttccctgcccgcttctccttccccacgctcctctccaaagcctcctcctcctcctccccgcgtctccatcttccttccgcgctcgccctccacgcgcagctgctccgccgcggcctcctcttctcgcccccgctccacgccgccaacgccctcctccatttctacgccgccgccaccctcctcccctgcgcccgcaacctgttcgatgaaatgcccttcagggacgtcgcctcctacaacaccatgatgactgcctacgctggcgccgtcgacggcattgacgccgcacgacacctgttcgacggaatgcttctgaggaatgtggtgtcatggaacatcatgatcaacgggtatgtgaaggtgaagcgccccgagcaagctctggaggtggtgcggtggatggcggagattggggtcaggggcacagctgtcgcaatggttggggcagccactgcgtgcgcaaggttgggcaggttgggggctgggaaggaggtacattgtgctttcctgcgccgttttgaggagcgtaacctgctgttctcgactgcattggtcgatatgtatggaaagtgtcggaatgcggatgctgcgaggaaggtgtttgatcggctgagctttaggaatgttgtttgctggaacgcaatgatcatcggccattgtgtgtatggagaacctggtgatgggattcgattgtttcatgacatgattggacaagacgatcaacatgggctgctaccagacgaagtcactttcattggtgtcctctgcgcgtgtacccgtctagctctcttggatgacgggaaggcatattttgagcagatgagcaccatgtacaacatcaagccaacatttgcacattattggtgcatggccaatctgtatgcaagtgttgggcttctggaagaagctgagggtctcttaacgagtatgccagaggagttgaaggcacatgcattgggtggtttgcttgggttgtgccggttccgaggggagtgggaactgggggagcggatagtcctgaggttgattgagttggaaccaagcaatagtgttcactatgccctgctgtgcaatgtgtatgcttctgcggggagatgggaagatgttcatagggtgaaggctatcataaaggaaagagacgagaagctcagtcctggacatcgcctggtgaacttaaacgagattcttcatcaatttagggagaggcaacctgagaatcaagaaatatatggaatcttggatggcttggtgtcaagacttaagttaacaagcagatcctctcttcctcccccgccctccgatccccaagtgcccttgtgctaccccgcgccgcgcgccgtcacagtcgacgcttccgccgccgccgccgtcgtcgtcgtcggcaggcagctcatggaggttgctacgcccaataataacgctcaccaggtcattgatgaactagtatccaatgatgatgatgacgataggctcagcgccctcccagatgaaatttcgatcgacatcctccaacgcctgccgctgcgcacttcagcacagaccaccatcctcgcaaggcgatggacccatcttttcccatccatgacacatctcaaaatagatatcaatgaatttgtaccatgcatcctcactaggcacaatgtggctcgaagcatggccatgtcgtggtacacccaagcactaaggacattgctagctcctacaattgaccctgatcggaccataaggatcatgcatctacgcttctaccccacagactcatacctgctctccattgcccgcatggtcgacgatgcggttcagagtgccagtgccagcaagattgaggtccttgactttgccattctgaatgaggtgtccgaggtgcactgcaccgagaaacagatgtcacgatacggacgacgcttcatgtccttctttcaggcttgccccaatggattcaggtgcctaacaagcctctctctatgggccctcagctgcagcacctccttctacgggctttgcgatagcggtcgcaactctgtgctcaagattgacgcatcaccatgctcacagctcaggacattgaggatgatcttctgcagttacatcaaggttgaactcgtccacgttccaaagcttgaatcagtggattgtgatacatgggtgggtgtcaaccctcctgtttattttggttgcgtcccactgcttgacaagatacgcttctcttccacctgccttaagatgcagcaaccattcgtgctgagcagctggctgtccactgtgccaactctaactagtttgcatctggacttccaatatgagatggtttggatcatgccagaagagccgaagaaactattccccatatttcgcaatcttaaggatgtatatctttacaacattagtaatgacagtggcctcgactggacactgtttgtccttgaaggcgcaccctccctcaagagttttcatgttaagatatctcaccacatatgtgggggggatggttttgagcacaatgctggcagtagtaatgttgtgtgggaagcatcatctgacatcatcaagcataaaaacttgaggttgttggatataataggctttgagacagaagagaatctgatcaagtacataaggctcgccattcagcgagctatcgctttacagagaattcacttgcatgagaaggaaccatgtgaagactgcgatgatatttatctcaatacgccatctctgtccagaactagattccctaacaatgagcaagagaaggatctactaagagagcaactcctgcagggattctcatcgtctatagaaataataataggttgttactacgcacaagaactttatttgggtcatatgcagtgccaagtcgtcgatgacaggctcagcgcgctcccggatgaaattttgattgacatcctccaacggctgcaactgccgactgcagcccggaccaccactcttgcaagaagatggacccatcttctccaatccatgaaccatcttgaaatcgatgttgccgatttcataccacgccggtctgctccttcactcaaaaggaacaccatgactcgagtcaaggtggccatgtcaaggtacacccaagcaatgaggacattgttggctccaagagctgaaagccctcaactcatcatcatcaggacactgcacctgtgcttctatctcactgacccttacctgcactccgttgggcgcatgcttgaggatgcagttcagagtgccggtggcagagcaagcaagattgaggtcctttccttttccatcctgaccgaggtgcctgagctgctttgtaccgagaaacacctggcacgatatgggagacgcttcatgtccttctttcaagcttaccccaatgcattcaggcgactgacaagcctctctctgtgggctctcaggtttggggattcagacatccccaacctcctagcctcctgcctccagctgcagcacctcaccctgcaggattgcgataatggcaagaggtctgtgctcagaatcgatgcaccaaactcgcagctcagcacgctgacgatggccttctgcagttacatcaaggttgagctcatcaacgctcccaagctgaaatgcgtggactgtgatacatgggtgggtgccaatcctcctgtttgtttcggctgcgtcccaatgcttgaccggatacgtttctcttccacctgccacaagatgcagctgccattcaagctcagcgactggctgtcgaccgtgccaactctaactagtttgcatctggacttccaggatgagatggtttggatcctgccagaagagcccaagaaactcttccccatattccgcaatcttaggaatgtatatctttgcagcattagtcttgattgtggcctcgactggactctctttgtccttgaaggcgcacccttcctcgagcgatttcatgttaagatatctctccacatatgtgacgagaatggctttaaggacagggctgacagaagcaatgttgtgtgggaagcatcatctgaaagcatcaagcataagaccttgaggttgctggatataaacggctttgagaccactgagaatctgatcaagtacataaggcttgtcattcagagagctgtggggctacagcgaattcacttgcatgataaggaaccgtgcgaagattgcgatggtatttatctcaatacgccatctctgtccagaactatattccccaacaatgaggcagagaaggatctgttaagacagcaactcctgcagggattctcctcatctatagagataacaatagtgtgccacaggatggcgtag More
Protein seq		MAPASPAVMASRPDPGELQAFLRGLRTHHAVLCAHAFLLRRGLLLGHRTTAGILLSAATSTATSASRPAHAHAHAHLLRLLLHHLPPPLPLFSLDNALRALAPRLPFSALLSLFAALLRSHHPAFPARFSFPTLLSKASSSSSPRLHLPSALALHAQLLRRGLLFSPPLHAANALLHFYAAATLLPCARNLFDEMPFRDVASYNTMMTAYAGAVDGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGEPGDGIRLFHDMIGQDDQHGLLPDEVTFIGVLCACTRLALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALGGLLGLCRFRGEWELGERIVLRLIELEPSNSVHYALLCNVYASAGRWEDVHRVKAIIKERDEKLSPGHRLVNLNEILHQFRERQPENQEIYGILDGLVSRLKLTSRSSLPPPPSDPQVPLCYPAPRAVTVDASAAAAVVVVGRQLMEVATPNNNAHQVIDELVSNDDDDDRLSALPDEISIDILQRLPLRTSAQTTILARRWTHLFPSMTHLKIDINEFVPCILTRHNVARSMAMSWYTQALRTLLAPTIDPDRTIRIMHLRFYPTDSYLLSIARMVDDAVQSASASKIEVLDFAILNEVSEVHCTEKQMSRYGRRFMSFFQACPNGFRCLTSLSLWALSCSTSFYGLCDSGRNSVLKIDASPCSQLRTLRMIFCSYIKVELVHVPKLESVDCDTWVGVNPPVYFGCVPLLDKIRFSSTCLKMQQPFVLSSWLSTVPTLTSLHLDFQYEMVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGDGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGCYYAQELYLGHMQCQVVDDRLSALPDEILIDILQRLQLPTAARTTTLARRWTHLLQSMNHLEIDVADFIPRRSAPSLKRNTMTRVKVAMSRYTQAMRTLLAPRAESPQLIIIRTLHLCFYLTDPYLHSVGRMLEDAVQSAGGRASKIEVLSFSILTEVPELLCTEKHLARYGRRFMSFFQAYPNAFRRLTSLSLWALRFGDSDIPNLLASCLQLQHLTLQDCDNGKRSVLRIDAPNSQLSTLTMAFCSYIKVELINAPKLKCVDCDTWVGANPPVCFGCVPMLDRIRFSSTCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEPKKLFPIFRNLRNVYLCSISLDCGLDWTLFVLEGAPFLERFHVKISLHICDENGFKDRADRSNVVWEASSESIKHKTLRLLDINGFETTENLIKYIRLVIQRAVGLQRIHLHDKEPCEDCDGIYLNTPSLSRTIFPNNEAEKDLLRQQLLQGFSSSIEITIVCHRMA
Function		Pentatricopeptide repeat-containing protein At3g51320 [UniProtKB/Swiss-Prot:Q0WVU0]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_05g0000550	OsLiXu_05g0000550.01	Chr05	361681	371659	-	NAM
CDS seq	atggcgccggcaagtccagcagtgatggcatcccggccggaccccggcgagctccaagccttcctccgcggcctccgcacccaccacgccgtcctctgcgcccacgccttcctcctccgccgcggcctcctcctcggccaccgcaccaccgccggcatcctcctctccgccgccacctccaccgccacctccgcctcgcgacctgcccacgcccacgcccacgcccacctcctccgcctcctcctccaccacctccctccacccctcccgctcttctccctcgacaacgccctccgcgccctcgccccgcgcctccccttctccgccctcctctccctcttcgccgccctcctccgctcccaccaccccgccttccctgcccgcttctccttccccacgctcctctccaaagcctcctcctcctcctccccgcgtctccatcttccttccgcgctcgccctccacgcgcagctgctccgccgcggcctcctcttctcgcccccgctccacgccgccaacgccctcctccatttctacgccgccgccaccctcctcccctgcgcccgcaacctgttcgatgaaatgcccttcagggacgtcgcctcctacaacaccatgatgactgcctacgctggcgccgtcgacggcattgacgccgcacgacacctgttcgacggaatgcttctgaggaatgtggtgtcatggaacatcatgatcaacgggtatgtgaaggtgaagcgccccgagcaagctctggaggtggtgcggtggatggcggagattggggtcaggggcacagctgtcgcaatggttggggcagccactgcgtgcgcaaggttgggcaggttgggggctgggaaggaggtacattgtgctttcctgcgccgttttgaggagcgtaacctgctgttctcgactgcattggtcgatatgtatggaaagtgtcggaatgcggatgctgcgaggaaggtgtttgatcggctgagctttaggaatgttgtttgctggaacgcaatgatcatcggccattgtgtgtatggagaacctggtgatgggattcgattgtttcatgacatgattggacaagacgatcaacatgggctgctaccagacgaagtcactttcattggtgtcctctgcgcgtgtacccgtctagctctcttggatgacgggaaggcatattttgagcagatgagcaccatgtacaacatcaagccaacatttgcacattattggtgcatggccaatctgtatgcaagtgttgggcttctggaagaagctgagggtctcttaacgagtatgccagaggagttgaaggcacatgcattgggtggtttgcttgggttgtgccggttccgaggggagtgggaactgggggagcggatagtcctgaggttgattgagttggaaccaagcaatagtgttcactatgccctgctgtgcaatgtgtatgcttctgcggggagatgggaagatgttcatagggtgaaggctatcataaaggaaagagacgagaagctcagtcctggacatcgcctggtgaacttaaacgagattcttcatcaatttagggagaggcaacctgagaatcaagaaatatatggaatcttggatggcttggtgtcaagacttaagttaacaagcagatcctctcttcctcccccgccctccgatccccaagtgcccttgtgctaccccgcgccgcgcgccgtcacagtcgacgcttccgccgccgccgccgtcgtcgtcgtcggcaggcagctcatggaggttgctacgcccaataataacgctcaccaggtcattgatgaactagtatccaatgatgatgatgacgataggctcagcgccctcccagatgaaatttcgatcgacatcctccaacgcctgccgctgcgcacttcagcacagaccaccatcctcgcaaggcgatggacccatcttttcccatccatgacacatctcaaaatagatatcaatgaatttgtaccatgcatcctcactaggcacaatgtggctcgaagcatggccatgtcgtggtacacccaagcactaaggacattgctagctcctacaattgaccctgatcggaccataaggatcatgcatctacgcttctaccccacagactcatacctgctctccattgcccgcatggtcgacgatgcggttcagagtgccagtgccagcaagattgaggtccttgactttgccattctgaatgaggtgtccgaggtgcactgcaccgagaaacagatgtcacgatacggacgacgcttcatgtccttctttcaggcttgccccaatggattcaggtgcctaacaagcctctctctatgggccctcagctgcagcacctccttctacgggctttgcgatagcggtcgcaactctgtgctcaagattgacgcatcaccatgctcacagctcaggacattgaggatgatcttctgcagttacatcaaggttgaactcgtccacgttccaaagcttgaatcagtggattgtgatacatgggtgggtgtcaaccctcctgtttattttggttgcgtcccactgcttgacaagatacgcttctcttccacctgccttaagatgcagcaaccattcgtgctgagcagctggctgtccactgtgccaactctaactagtttgcatctggacttccaatatgagatggtttggatcatgccagaagagccgaagaaactattccccatatttcgcaatcttaaggatgtatatctttacaacattagtaatgacagtggcctcgactggacactgtttgtccttgaaggcgcaccctccctcaagagttttcatgttaagatatctcaccacatatgtgggggggatggttttgagcacaatgctggcagtagtaatgttgtgtgggaagcatcatctgacatcatcaagcataaaaacttgaggttgttggatataataggctttgagacagaagagaatctgatcaagtacataaggctcgccattcagcgagctatcgctttacagagaattcacttgcatgagaaggaaccatgtgaagactgcgatgatatttatctcaatacgccatctctgtccagaactagattccctaacaatgagcaagagaaggatctactaagagagcaactcctgcagggattctcatcgtctatagaaataataataggttgttactacgcacaagaactttatttgggtcatatgcagtgccaagtcgtcgatgacaggctcagcgcgctcccggatgaaattttgattgacatcctccaacggctgcaactgccgactgcagcccggaccaccactcttgcaagaagatggacccatcttctccaatccatgaaccatcttgaaatcgatgttgccgatttcataccacgccggtctgctccttcactcaaaaggaacaccatgactcgagtcaaggtggccatgtcaaggtacacccaagcaatgaggacattgttggctccaagagctgaaagccctcaactcatcatcatcaggacactgcacctgtgcttctatctcactgacccttacctgcactccgttgggcgcatgcttgaggatgcagttcagagtgccggtggcagagcaagcaagattgaggtcctttccttttccatcctgaccgaggtgcctgagctgctttgtaccgagaaacacctggcacgatatgggagacgcttcatgtccttctttcaagcttaccccaatgcattcaggcgactgacaagcctctctctgtgggctctcaggtttggggattcagacatccccaacctcctagcctcctgcctccagctgcagcacctcaccctgcaggattgcgataatggcaagaggtctgtgctcagaatcgatgcaccaaactcgcagctcagcacgctgacgatggccttctgcagttacatcaaggttgagctcatcaacgctcccaagctgaaatgcgtggactgtgatacatgggtgggtgccaatcctcctgtttgtttcggctgcgtcccaatgcttgaccggatacgtttctcttccacctgccacaagatgcagctgccattcaagctcagcgactggctgtcgaccgtgccaactctaactagtttgcatctggacttccaggatgagatggtttggatcctgccagaagagcccaagaaactcttccccatattccgcaatcttaggaatgtatatctttgcagcattagtcttgattgtggcctcgactggactctctttgtccttgaaggcgcacccttcctcgagcgatttcatgttaagatatctctccacatatgtgacgagaatggctttaaggacagggctgacagaagcaatgttgtgtgggaagcatcatctgaaagcatcaagcataagaccttgaggttgctggatataaacggctttgagaccactgagaatctgatcaagtacataaggcttgtcattcagagagctgtggggctacagcgaattcacttgcatgataaggaaccgtgcgaagattgcgatggtatttatctcaatacgccatctctgtccagaactatattccccaacaatgaggcagagaaggatctgttaagacagcaactcctgcagggattctcctcatctatagagataacaatagtgtgccacaggatggcgtag More
Protein seq	MAPASPAVMASRPDPGELQAFLRGLRTHHAVLCAHAFLLRRGLLLGHRTTAGILLSAATSTATSASRPAHAHAHAHLLRLLLHHLPPPLPLFSLDNALRALAPRLPFSALLSLFAALLRSHHPAFPARFSFPTLLSKASSSSSPRLHLPSALALHAQLLRRGLLFSPPLHAANALLHFYAAATLLPCARNLFDEMPFRDVASYNTMMTAYAGAVDGIDAARHLFDGMLLRNVVSWNIMINGYVKVKRPEQALEVVRWMAEIGVRGTAVAMVGAATACARLGRLGAGKEVHCAFLRRFEERNLLFSTALVDMYGKCRNADAARKVFDRLSFRNVVCWNAMIIGHCVYGEPGDGIRLFHDMIGQDDQHGLLPDEVTFIGVLCACTRLALLDDGKAYFEQMSTMYNIKPTFAHYWCMANLYASVGLLEEAEGLLTSMPEELKAHALGGLLGLCRFRGEWELGERIVLRLIELEPSNSVHYALLCNVYASAGRWEDVHRVKAIIKERDEKLSPGHRLVNLNEILHQFRERQPENQEIYGILDGLVSRLKLTSRSSLPPPPSDPQVPLCYPAPRAVTVDASAAAAVVVVGRQLMEVATPNNNAHQVIDELVSNDDDDDRLSALPDEISIDILQRLPLRTSAQTTILARRWTHLFPSMTHLKIDINEFVPCILTRHNVARSMAMSWYTQALRTLLAPTIDPDRTIRIMHLRFYPTDSYLLSIARMVDDAVQSASASKIEVLDFAILNEVSEVHCTEKQMSRYGRRFMSFFQACPNGFRCLTSLSLWALSCSTSFYGLCDSGRNSVLKIDASPCSQLRTLRMIFCSYIKVELVHVPKLESVDCDTWVGVNPPVYFGCVPLLDKIRFSSTCLKMQQPFVLSSWLSTVPTLTSLHLDFQYEMVWIMPEEPKKLFPIFRNLKDVYLYNISNDSGLDWTLFVLEGAPSLKSFHVKISHHICGGDGFEHNAGSSNVVWEASSDIIKHKNLRLLDIIGFETEENLIKYIRLAIQRAIALQRIHLHEKEPCEDCDDIYLNTPSLSRTRFPNNEQEKDLLREQLLQGFSSSIEIIIGCYYAQELYLGHMQCQVVDDRLSALPDEILIDILQRLQLPTAARTTTLARRWTHLLQSMNHLEIDVADFIPRRSAPSLKRNTMTRVKVAMSRYTQAMRTLLAPRAESPQLIIIRTLHLCFYLTDPYLHSVGRMLEDAVQSAGGRASKIEVLSFSILTEVPELLCTEKHLARYGRRFMSFFQAYPNAFRRLTSLSLWALRFGDSDIPNLLASCLQLQHLTLQDCDNGKRSVLRIDAPNSQLSTLTMAFCSYIKVELINAPKLKCVDCDTWVGANPPVCFGCVPMLDRIRFSSTCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEPKKLFPIFRNLRNVYLCSISLDCGLDWTLFVLEGAPFLERFHVKISLHICDENGFKDRADRSNVVWEASSESIKHKTLRLLDINGFETTENLIKYIRLVIQRAVGLQRIHLHDKEPCEDCDGIYLNTPSLSRTIFPNNEAEKDLLRQQLLQGFSSSIEITIVCHRMA More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.051043	0.125783

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0106800	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g01620	RBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0106900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0000540	RBH	0.035285	1.158555	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0000530	RBH	0.028098	0.000000	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0000560	RBH	0.276210	0.0	0.269943
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0000530	RBH	0.0	0.015907	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0000530	RBH	0.000000	0.000000	1.182229
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0005600	RBH	0.245111	0.700917	0.461871
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0000540	RBH	0.000000	0.041616	0.123638
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0006200	RBH	0.098289	0.1212	0.3420915
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0000570	RBH	0.0	0.033091	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0000500	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0000530	RBH	0.327111	1.357898	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0047810	RBH	0.216367	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0000560	RBH	0.0	1.464198	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G000510	RBH	0.0	0.0	0.260729
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0000560	RBH	0.0	1.137890	0.561856

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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