Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0102200 | OGI:05047900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:140783-143130 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAACTTTGGGGGTTACCTTGAAAATCTCAAGGTTCCCCTTTCTCTGTTTCATTTTTCTAGCTGAAGATTGAATCTGTTTAAGCACATGCTCAATTTCTTTAAAATCCTCATCATTAGTTTCAGAATCCAAATCATCAGAAAAAACATTTAAATCAGGATTTGAATTCTCAAAGGAATCAAGACAATGTTGACCTTCAGAATTTGTTCCCTCTTTCAGAAAGAGGTTAATTCTGGCCATCTCTAAGTCTCTAATCAGATTAATATTAGAGGCTATATCATCAACAGCACAACCCAGATTGACCCCTAAAACACTAGCAATATCAATTAAAGAGACATTTGATTCATGTATGAAGGAGGGAATTTTTATTGATGAAAGCATTTTGTGCTTCTTTCCTTTCCATTGCCATCTCTTGGGACCTCTTATCTTCCTTGTCTTTCAGTCTCTTGCTTCTCCTCATCTCTTCATCTTGACTTCCAAGAGCTTCTTCAGTTAGATTAATCCCCAACCTCTTAGCAAAACTTCCCTTAGACTCCTGAGAATCCATGTAATCTTCACTGTCCCCCGGATCTACTTTGTCCTTGTCTTCTTGATTCAAACCCATATCAAAACTGACTCTATTCTCCTTATCCCCTGGAACATCTGTCTAAGAGCTTTCTAATTCTTCAGCCAACTTTTGATTCATCGGTTGCTGCAGAGTATCAACCTGCTCCTGTGACATTTCCTTTTTCCCAACCTCTTTCCTTCCTTCACAGCACTGAGTCAGAATACAGTCTCCTTTCTGCAGTTGCATTGCCAACTCCATGTCTCTCAAGATCTGTGCACATTTGATCTTATGTTCTCCCAGCATCAATTCTGGCACCAGGACTTGCTTCTGACAAACTTCAATAGCCCGTTACCCGTCTTACTGACATGGTGATCTTCTGTCATGGGATCCACCACCACAACTTGCTTACCCTCTCTCTGACTGCTACCCTCCAGAGTATTTTCTTGTATCTCAATTTTCTCAAAAGTGTCATCTAGCTGATCACTAAACCACCCCAGTTCCACCACCTCCTCTAGACTGAAATGAGCTTGGAACAAAAGTCCCTTGGGAGAAGTTAACACTAGTTTCAAAGGCAGAACACCCAGCTCCATCATTCCAACTTTTGCCCTGATCACATTGCTAGCTCTGAAAGTAGCCATATCAACCTCCAAGACAGGCCCTAGATTTGACCCAATTTCATACAAAGCTTGGTAACCCTTCATTTCCTCAGGAATTCCAGTGATTTTGACCCAGACAATATGCAACTTCCCAACTGCTTCAGATTTCTGGGTCCATTCTTTCACATTAACTTGCACATCAGTGCCCTTGACATTGAAATAATCAAAGTTTGCAAGCTCATCAAACTTTATCTTGTTACGAAATCTCATCTGAAAGCTTCCATTAGGCATTGCTTTAGCTTTCCAAACCCAATTCCACTTAAATTGTTGCGTGAAACCTTGCTCAAGTTGAGCTTCTGTCAATTCTCCACCAAAGACAGTAGAGATCATAGCCAGAGGATTATTATGCTCCTTAGGTGGGTCAGGCTTAGTGTTTTGAATTAAGATGCAACCTAAACCTGGAGCACCATACCCTACTAGCTTTGCCATAGGCCTCGGCTGCTTGTCATAGATGCAATCCTCTGTCCTATGTGTGGGTTTGGCACAATTTATACAGAAGACAACATTGCTACAATCCCTAGCCATGTGGCCAAAACCTTTGCATCTGTGGCAGAAAATTCTCTGTGGGTTAGTTTGCATACCAGTGCGAGAATTGGGTGGTGGAGTTGGTTGCTGGGTTGCAGTCTGAGGAGTCACTGCAGATGTCGCAATCTTCTCTTCAGTTTGATTCTTCTCCTTCTGAACTGGACGATATTGCTGCAGCTTCCCCCCTTTGTTCATCTGGCCCCTCATCTCTCCACCTCCAGCCTTGGTGGATTGCTCACTCCCAGCTTGCGAGGAGCCCCCCTGGTGCGCCACTGCGGGAGGGCGACCTTCCTCACCACGGCTGGACGCCGACGCCACCCTCCGCCTGGATGCCCTTGATTCGCCATTCGCCCACGAACCACCCTTGCAAATCGACGCTTATCGCCTTGGATTGTGCCTCTCCACCGAGATTCACCACCTCCGATCCCCAATCGAGGCCACTCCTCCGCCTCCACACCCTTGCAACTTGTGGATTCCTTCCGCCGCCACTCACCTCTCAACCCTAAATTTCTCGGGCTCTCTCCCCACAGATGATGGAGATGGGGAACCAACTGTTGGAGGTGAGTGGATTTGGGGGGATCCATTACTGTCAAAACGGGGCATCACGTGTTTCTAAATAT
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| CDS seq | ATGAGGGGCCAGATGAACAAAGGGGGGAAGCTGCAGCAATATCGTCCAGTTCAGAAGGAGAAGAATCAAACTGAAGAGAAGATTGCGACATCTGCAGTGACTCCTCAGACTGCAACCCAGCAACCAACTCCACCACCCAATTCTCGCACTGGTATGCAAACTAACCCACAGAGAATTTTCTGCCACAGATGCAAAGGTTTTGGCCACATGGCTAGGGATTGTAGCAATGTTGTCTTCTGTATAAATTGTGCCAAACCCACACATAGGACAGAGGATTGCATCTATGACAAGCAGCCGAGGCCTATGGCAAAGCTAGTAGGGTATGGTGCTCCAGGTTTAGGTTGCATCTTAATTCAAAACACTAAGCCTGACCCACCTAAGGAGCATAATAATCCTCTGGCTATGATCTCTACTGTCTTTGGTGGAGAATTGACAGAAGCTCAACTTGAGCAAGGTTTCACGCAACAATTTAAGTGGAATTGGGTTTGGAAAGCTAAAGCAATGCCTAATGGAAGCTTTCAGATGAGATTTCGTAACAAGATAAAGTTTGATGAGCTTGCAAACTTTGATTATTTCAATGTCAAGGGCACTGATGTGCAAGTTAATGTGAAAGAATGGACCCAGAAATCTGAAGCAGTTGGGAAGTTGCATATTGTCTGGGTCAAAATCACTGGAATTCCTGAGGAAATGAAGGGTTACCAAGCTTTGTATGAAATTGGGTCAAATCTAGGGCCTGTCTTGGAGGTTGATATGGCTACTTTCAGAGCTAGCAATGTGATCAGGGCAAAAGTTGGAATGATGGAGCTGGGTGTTCTGCCTTTGAAACTAGTGTTAACTTCTCCCAAGGGACTTTTGTTCCAAGCTCATTTCAGTCTAGAGGAGGTGGTGGAACTGGGGTGGTTTAGTGATCAGCTAGATGACACTTTTGAGAAAATTGAGATACAAGAAAATACTCTGGAGGGTAGCAGTCAGAGAGAGGGTAAGCAAGTTGTGGTGGTGGATCCCATGACAGAAGATCACCATGTCAGTAAGACGGGTAACGGGCTATTGAAGTTTGTCAGAAGCAAGTCCTGGTGCCAGAATTGA
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| Protein seq | MRGQMNKGGKLQQYRPVQKEKNQTEEKIATSAVTPQTATQQPTPPPNSRTGMQTNPQRIFCHRCKGFGHMARDCSNVVFCINCAKPTHRTEDCIYDKQPRPMAKLVGYGAPGLGCILIQNTKPDPPKEHNNPLAMISTVFGGELTEAQLEQGFTQQFKWNWVWKAKAMPNGSFQMRFRNKIKFDELANFDYFNVKGTDVQVNVKEWTQKSEAVGKLHIVWVKITGIPEEMKGYQALYEIGSNLGPVLEVDMATFRASNVIRAKVGMMELGVLPLKLVLTSPKGLLFQAHFSLEEVVELGWFSDQLDDTFEKIEIQENTLEGSSQREGKQVVVVDPMTEDHHVSKTGNGLLKFVRSKSWCQN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0102200 | OsNip_05t0102200-01 | Chr05 | 140783 | 143130 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGGGGCCAGATGAACAAAGGGGGGAAGCTGCAGCAATATCGTCCAGTTCAGAAGGAGAAGAATCAAACTGAAGAGAAGATTGCGACATCTGCAGTGACTCCTCAGACTGCAACCCAGCAACCAACTCCACCACCCAATTCTCGCACTGGTATGCAAACTAACCCACAGAGAATTTTCTGCCACAGATGCAAAGGTTTTGGCCACATGGCTAGGGATTGTAGCAATGTTGTCTTCTGTATAAATTGTGCCAAACCCACACATAGGACAGAGGATTGCATCTATGACAAGCAGCCGAGGCCTATGGCAAAGCTAGTAGGGTATGGTGCTCCAGGTTTAGGTTGCATCTTAATTCAAAACACTAAGCCTGACCCACCTAAGGAGCATAATAATCCTCTGGCTATGATCTCTACTGTCTTTGGTGGAGAATTGACAGAAGCTCAACTTGAGCAAGGTTTCACGCAACAATTTAAGTGGAATTGGGTTTGGAAAGCTAAAGCAATGCCTAATGGAAGCTTTCAGATGAGATTTCGTAACAAGATAAAGTTTGATGAGCTTGCAAACTTTGATTATTTCAATGTCAAGGGCACTGATGTGCAAGTTAATGTGAAAGAATGGACCCAGAAATCTGAAGCAGTTGGGAAGTTGCATATTGTCTGGGTCAAAATCACTGGAATTCCTGAGGAAATGAAGGGTTACCAAGCTTTGTATGAAATTGGGTCAAATCTAGGGCCTGTCTTGGAGGTTGATATGGCTACTTTCAGAGCTAGCAATGTGATCAGGGCAAAAGTTGGAATGATGGAGCTGGGTGTTCTGCCTTTGAAACTAGTGTTAACTTCTCCCAAGGGACTTTTGTTCCAAGCTCATTTCAGTCTAGAGGAGGTGGTGGAACTGGGGTGGTTTAGTGATCAGCTAGATGACACTTTTGAGAAAATTGAGATACAAGAAAATACTCTGGAGGGTAGCAGTCAGAGAGAGGGTAAGCAAGTTGTGGTGGTGGATCCCATGACAGAAGATCACCATGTCAGTAAGACGGGTAACGGGCTATTGAAGTTTGTCAGAAGCAAGTCCTGGTGCCAGAATTGA
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| Protein seq | MRGQMNKGGKLQQYRPVQKEKNQTEEKIATSAVTPQTATQQPTPPPNSRTGMQTNPQRIFCHRCKGFGHMARDCSNVVFCINCAKPTHRTEDCIYDKQPRPMAKLVGYGAPGLGCILIQNTKPDPPKEHNNPLAMISTVFGGELTEAQLEQGFTQQFKWNWVWKAKAMPNGSFQMRFRNKIKFDELANFDYFNVKGTDVQVNVKEWTQKSEAVGKLHIVWVKITGIPEEMKGYQALYEIGSNLGPVLEVDMATFRASNVIRAKVGMMELGVLPLKLVLTSPKGLLFQAHFSLEEVVELGWFSDQLDDTFEKIEIQENTLEGSSQREGKQVVVVDPMTEDHHVSKTGNGLLKFVRSKSWCQN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.216077 | 1.377409 | 1.516415 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01180 | RBH | 0.822721 | 0.926663 | 0.391154 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0102200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010530 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0014390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G010150 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010480 | RBH | 0.0 | 0.0 | 0.0 |
