Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_05g0014250 OGI:05047900 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr05:18702186-18704404
Gene Symbol -
DNA seq

cctctcccccaggccaacaaatccttatccccttccgcttgggtctgggtgaggagaggaggtgctcactccccgcatctagggtttccggcacaaggagaggaaatccggaggtttggagcggcggcgcgacggatctggaagatccctgagaagaggtgtgatcaccggtcctttgtggaggtggtgatggatcgacagccgcccaatcccctagattggcgcaccaacaagaggaaggcagccgatttgggtgggggagaatgaggccaggcccgagggttggattccggcaagcaaggaggtgatcaggggaagttttGGggcggcgattcgagcaggcaaagcggagtttgggggcagaatgaagacgagcttcgtgggcaactccttacccagaatcagcgacctcctCCCcccctcctcctctggtggtagctcgccctgctgagcgcgaaggaagagatccaagagatcaagagcaaggaggcagaatcaagtgcttcaagtgtggacgtgaaggtcaccatcaggcaacctgtgctaatcctcctctttgttactcttgccacagctctggtcacattgcttctaactgccctatgagtttgtttaaaagaggtgttaagttgtgtggttttggcataccaggtcaggggttctatagtcttcatgtagatgctactgagactagtggtgctagaaccccagtgagaggtatattgactgtgattcagggtgttgctacggttcccaaaattatcaatgagctgaaaaatcttttcttgggccttcagtgggattggaaagtaaagcagctaagtgataaagagttcttgatttctttcccatctgaagatgtcaggagcaagatctctacttgtaagagctttggttttgatacttgttccattaaggctagtgttgttgagacaggaatgactgaggaggcaattgatgagttggccgttgtatgggtaaaaatctatggaatacctaagttagcaagagctaaagagtcggtgaaggcaatagttgagctgattggagagtttgaagcaattgatcacaatagcttgagaagaaatgagccagttagggtgagagtagcttgtaaggacccaagggaactccactttatgtgtatatcaataaagttggatacatgataagatgggaacctgagggttatccaccttatgaagaaaaacacgatccttctgatggtggggatgatgatgggggcaaagatgataccaatgatgatatgaatttggatgaagatcccagaggaaaatgtccaaatagaggcagacaatctcaagagaaaagagctgataagaagagttcttttggagcccactctgctCcccccacatacaaaggaaaggtgcaacaacgggattactctcctgctagaccagtgaagaagattgcctccaagaaacaatctctattgtcccctaaagagtttttgcctgaagagaatgctctggtactttgggaagaagataaattgaatgttcagttggaacaagagttacaggaactagagattccactaagtaggcaactatctcaagtcagagagggaccttctagagttgagttttctgaagattcttatggaagtcaccatgaagagttagagatgtgtgatataccttctctatctgacatagttagactgaaagaggaagaggaggttgatgaggataatagtttcaaggaggtgtcaaataagaaaaaagggaagaaagggggtgaacctgctgtcacctctagaatgagcttgagacacagagacctggcggccatccctgtccctaagagagctgagatcctgacccagaagaagaacttggagtccacaggtaattccaacccctttgctatttttcaattaattgataatgaagacctgcttaagattgcctctgcttcccatatttctcttggtaagaatagagatgaaatagatagaaacatagattctattaaggccaaggaattagttcaggccaaactttctgagttgagatggaaacaggaaaaagaaagagttgacgcccagagagttatagatgatgctggatgtgtaatcgatcaggatgagactgtagtagtccctgatggagatgagaatgatggcttttctagccctgagcttaagaggagatggggttctaagacaaaaaagaaaaaatgagatgtctcTt

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CDS seq

atgaagacgagcttcgtgggcaactccttacccagaatcagcgacctcctCCCcccctcctcctctggtgctcgccctgctgagcgcgaaggaagagatccaagagatcaagagcaaggaggcagaatcaagtgcttcaagtgtggacgtgaaggtcaccatcaggcaacctgtgctaatcctcctctttgttactcttgccacagctctggtcacattgcttctaactgccctatgagtttgtttaaaagaggtgttaagttgtgtggttttggcataccaggtcaggggttctatagtcttcatgtagatgctactgagactagtggtgctagaaccccagtgagaggtatattgactgtgattcagggtgttgctacggttcccaaaattatcaatgagctgaaaaatcttttcttgggccttcagtgggattggaaagtaaagcagctaagtgataaagagttcttgatttctttcccatctgaagatgtcaggagcaagatctctacttgtaagagctttggttttgatacttgttccattaaggctagtgttgttgagacaggaatgactgaggaggcaattgatgagttggccgttgtatgggtaaaaatctatggaatacctaagttagcaagagctaaagagtcggtgaaggcaatagttgagctgattggagagtttgaagcaattgatcacaatagcttgagaagaaatgagccagttagggtgagagtagcttgtaaggacccaagggaactccactttatatgggaacctgagggttatccaccttatgaagaaaaacacgatccttctgatggtggggatgatgatgggggcaaagatgataccaatgatgatatgaatttggatgaagatcccagaggaaaatgtccaaatagaggcagacaatctcaagagaaaagagctgataagaagagttcttttggagcccactctgctCcccccacatacaaaggaaaggtgcaacaacgggattactctcctgctagaccagtgaagaagattgcctccaagaaacaatctctattgtcccctaaagagtttttgcctgaagagaatgctctggtactttgggaagaagataaattgaatgttcagttggaacaagagttacaggaactagagattccactaagtaggcaactatctcaagtcagagagggaccttctagagttgagttttctgaagattcttatggaagtcaccatgaagagttagagatgtgtgatataccttctctatctgacatagttagactgaaagaggaagaggaggttgatgaggataatagtttcaaggaggtgtcaaataagaaaaaagggaagaaagggggtgaacctgctgtcacctctagaatgagcttgagacacagagacctggcggccatccctgtccctaagagagctgagatcctgacccagaagaagaacttggagtccacaggtaattccaacccctttgctatttttcaattaattgataatgaagacctgcttaagattgcctctgcttcccatatttctcttggtaagaatagagatgaaatagatagaaacatagattctattaaggccaaggaattagttcaggccaaactttctgagttgagatggaaacaggaaaaagaaagagttgacgcccagagagttatagatgatgctggatgtgtaatcgatcaggatgagactgtagtagtccctgatggagatgagaatgatggcttttctagccctgagcttaagaggagatggggttctaagacaaaaaagaaaaaatga

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Protein seq

MKTSFVGNSLPRISDLLPPSSSGARPAEREGRDPRDQEQGGRIKCFKCGREGHHQATCANPPLCYSCHSSGHIASNCPMSLFKRGVKLCGFGIPGQGFYSLHVDATETSGARTPVRGILTVIQGVATVPKIINELKNLFLGLQWDWKVKQLSDKEFLISFPSEDVRSKISTCKSFGFDTCSIKASVVETGMTEEAIDELAVVWVKIYGIPKLARAKESVKAIVELIGEFEAIDHNSLRRNEPVRVRVACKDPRELHFIWEPEGYPPYEEKHDPSDGGDDDGGKDDTNDDMNLDEDPRGKCPNRGRQSQEKRADKKSSFGAHSAPPTYKGKVQQRDYSPARPVKKIASKKQSLLSPKEFLPEENALVLWEEDKLNVQLEQELQELEIPLSRQLSQVREGPSRVEFSEDSYGSHHEELEMCDIPSLSDIVRLKEEEEVDEDNSFKEVSNKKKGKKGGEPAVTSRMSLRHRDLAAIPVPKRAEILTQKKNLESTGNSNPFAIFQLIDNEDLLKIASASHISLGKNRDEIDRNIDSIKAKELVQAKLSELRWKQEKERVDAQRVIDDAGCVIDQDETVVVPDGDENDGFSSPELKRRWGSKTKKKK

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_05g0014250 OsLima_05g0014250.01 Chr05 18702186 18704404 + NAM
CDS seq

atgaagacgagcttcgtgggcaactccttacccagaatcagcgacctcctCCCcccctcctcctctggtgctcgccctgctgagcgcgaaggaagagatccaagagatcaagagcaaggaggcagaatcaagtgcttcaagtgtggacgtgaaggtcaccatcaggcaacctgtgctaatcctcctctttgttactcttgccacagctctggtcacattgcttctaactgccctatgagtttgtttaaaagaggtgttaagttgtgtggttttggcataccaggtcaggggttctatagtcttcatgtagatgctactgagactagtggtgctagaaccccagtgagaggtatattgactgtgattcagggtgttgctacggttcccaaaattatcaatgagctgaaaaatcttttcttgggccttcagtgggattggaaagtaaagcagctaagtgataaagagttcttgatttctttcccatctgaagatgtcaggagcaagatctctacttgtaagagctttggttttgatacttgttccattaaggctagtgttgttgagacaggaatgactgaggaggcaattgatgagttggccgttgtatgggtaaaaatctatggaatacctaagttagcaagagctaaagagtcggtgaaggcaatagttgagctgattggagagtttgaagcaattgatcacaatagcttgagaagaaatgagccagttagggtgagagtagcttgtaaggacccaagggaactccactttatatgggaacctgagggttatccaccttatgaagaaaaacacgatccttctgatggtggggatgatgatgggggcaaagatgataccaatgatgatatgaatttggatgaagatcccagaggaaaatgtccaaatagaggcagacaatctcaagagaaaagagctgataagaagagttcttttggagcccactctgctCcccccacatacaaaggaaaggtgcaacaacgggattactctcctgctagaccagtgaagaagattgcctccaagaaacaatctctattgtcccctaaagagtttttgcctgaagagaatgctctggtactttgggaagaagataaattgaatgttcagttggaacaagagttacaggaactagagattccactaagtaggcaactatctcaagtcagagagggaccttctagagttgagttttctgaagattcttatggaagtcaccatgaagagttagagatgtgtgatataccttctctatctgacatagttagactgaaagaggaagaggaggttgatgaggataatagtttcaaggaggtgtcaaataagaaaaaagggaagaaagggggtgaacctgctgtcacctctagaatgagcttgagacacagagacctggcggccatccctgtccctaagagagctgagatcctgacccagaagaagaacttggagtccacaggtaattccaacccctttgctatttttcaattaattgataatgaagacctgcttaagattgcctctgcttcccatatttctcttggtaagaatagagatgaaatagatagaaacatagattctattaaggccaaggaattagttcaggccaaactttctgagttgagatggaaacaggaaaaagaaagagttgacgcccagagagttatagatgatgctggatgtgtaatcgatcaggatgagactgtagtagtccctgatggagatgagaatgatggcttttctagccctgagcttaagaggagatggggttctaagacaaaaaagaaaaaatga

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Protein seq

MKTSFVGNSLPRISDLLPPSSSGARPAEREGRDPRDQEQGGRIKCFKCGREGHHQATCANPPLCYSCHSSGHIASNCPMSLFKRGVKLCGFGIPGQGFYSLHVDATETSGARTPVRGILTVIQGVATVPKIINELKNLFLGLQWDWKVKQLSDKEFLISFPSEDVRSKISTCKSFGFDTCSIKASVVETGMTEEAIDELAVVWVKIYGIPKLARAKESVKAIVELIGEFEAIDHNSLRRNEPVRVRVACKDPRELHFIWEPEGYPPYEEKHDPSDGGDDDGGKDDTNDDMNLDEDPRGKCPNRGRQSQEKRADKKSSFGAHSAPPTYKGKVQQRDYSPARPVKKIASKKQSLLSPKEFLPEENALVLWEEDKLNVQLEQELQELEIPLSRQLSQVREGPSRVEFSEDSYGSHHEELEMCDIPSLSDIVRLKEEEEVDEDNSFKEVSNKKKGKKGGEPAVTSRMSLRHRDLAAIPVPKRAEILTQKKNLESTGNSNPFAIFQLIDNEDLLKIASASHISLGKNRDEIDRNIDSIKAKELVQAKLSELRWKQEKERVDAQRVIDDAGCVIDQDETVVVPDGDENDGFSSPELKRRWGSKTKKKK

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0102200 RBH 1.216077 1.377409 1.516415
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g40110 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os05g0102200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0022790 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0020920 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0020820 SBH 0.0 4.044487 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0022660 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0022730 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0271200 RBH 0.0048985 0.0057465 0.0266
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0014080 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0394900 RBH 0 0 0.002985
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0014280 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0014300 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0014370 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0014390 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0014310 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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