Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0685300 | OGI:04102680 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:35001018-35002142 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTGGCACAACTCAGAATCAACCAAGGAATCATAATAGATGTCACTCATAGAAGTAATAGGTGATCCTGAATAAAATCTCTGAATGTATCAACCAACATACAGTCATATATGATCTGAACAGCAGTAAGTAAGCCGTACCCAAAAGAAAGGGGAAAAAACTAAGAAGAACAAGACATGGATCGATAATATGTGCATGACAAGCGCTAGCTACAAGGGCTAGAAGATATGTAACCACCTAAACCACAGCGATGTACAGCAACATCCGGCGAGCTAATCCCTCATCAACAAATCGAAAGAAACAAAAGAATCCATCCGTCCATACTGGAAGCAGTGCTGGCTAATAGTAATCCCCAAATGCGAAGCGGAACCAACCATCGAAATCAGAACCAGACTTTGCAGTCGGTGCGCTGGAATGCGGGGGCGTTGGGGGCGGACGCTGGGACGGTGATGGGGCAGCTGATCTTGGCCTTGGGTCCGGGAACCTTGAAGGCCCAGACCTTGACCCTGAGCTTGGCGTTGAGCTTGACCTCGATGTCGAACTTGCCGGCGGTCTGCTGCGACCTGAAGTTGGCGGCGGTGATGTCGCCTTGGAGCGGCTGCTGGCCCTTGAAGGCGGGGGAGAGCTTGGTGGATGCCTCGGTGGACTGGTAGAAGGAGTCGAGGGGGGCGTAGCCGAAGCGCTGGCCGTCGAAGAGGGCGAGGGACTCGACGTTGTCGTAGTAGAGGCCGACGCGCTTGTTGGGGTTGCGGACGGTGAGGTCGACGGTGAGGCTGTAGGCGAGGGCGGAGTTGGTGGAGAGGGTGAACTGGGTGAGGGCGGCGGAGTCGACGGTGGCGGCGATCATGTGGGGGCGGAAGATGAGGTAGAAGATGAGGGCGAGGACGCCGAGGGTGACGAGGAGGGAGATGAGGATGCTGCAGAGGCAGCTGAAGAGGCCGCACGCCAGGCACTTGCACGGGCAGCACAGGCACGACACCGCGCGGCTCGCCGAACCCATCGCCGCCTCCTACCTTGTTGCCCCCTTGCCGAGATCTGCGACGGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGAATTGAACAACAAGTGGAGGAGGAGGAGACGATGCGGGTTTGTGGTTTGTGT
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| CDS seq | ATGGGTTCGGCGAGCCGCGCGGTGTCGTGCCTGTGCTGCCCGTGCAAGTGCCTGGCGTGCGGCCTCTTCAGCTGCCTCTGCAGCATCCTCATCTCCCTCCTCGTCACCCTCGGCGTCCTCGCCCTCATCTTCTACCTCATCTTCCGCCCCCACATGATCGCCGCCACCGTCGACTCCGCCGCCCTCACCCAGTTCACCCTCTCCACCAACTCCGCCCTCGCCTACAGCCTCACCGTCGACCTCACCGTCCGCAACCCCAACAAGCGCGTCGGCCTCTACTACGACAACGTCGAGTCCCTCGCCCTCTTCGACGGCCAGCGCTTCGGCTACGCCCCCCTCGACTCCTTCTACCAGTCCACCGAGGCATCCACCAAGCTCTCCCCCGCCTTCAAGGGCCAGCAGCCGCTCCAAGGCGACATCACCGCCGCCAACTTCAGGTCGCAGCAGACCGCCGGCAAGTTCGACATCGAGGTCAAGCTCAACGCCAAGCTCAGGGTCAAGGTCTGGGCCTTCAAGGTTCCCGGACCCAAGGCCAAGATCAGCTGCCCCATCACCGTCCCAGCGTCCGCCCCCAACGCCCCCGCATTCCAGCGCACCGACTGCAAAGTCTGGTTCTGA
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| Protein seq | MGSASRAVSCLCCPCKCLACGLFSCLCSILISLLVTLGVLALIFYLIFRPHMIAATVDSAALTQFTLSTNSALAYSLTVDLTVRNPNKRVGLYYDNVESLALFDGQRFGYAPLDSFYQSTEASTKLSPAFKGQQPLQGDITAANFRSQQTAGKFDIEVKLNAKLRVKVWAFKVPGPKAKISCPITVPASAPNAPAFQRTDCKVWF |
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| Function | NDR1/HIN1-like protein 2 [UniProtKB/Swiss-Prot:Q9SRN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0685300 | OsNip_04t0685300-02 | Chr04 | 35001018 | 35002142 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGTTCGGCGAGCCGCGCGGTGTCGTGCCTGTGCTGCCCGTGCAAGTGCCTGGCGTGCGGCCTCTTCAGCTGCCTCTGCAGCATCCTCATCTCCCTCCTCGTCACCCTCGGCGTCCTCGCCCTCATCTTCTACCTCATCTTCCGCCCCCACATGATCGCCGCCACCGTCGACTCCGCCGCCCTCACCCAGTTCACCCTCTCCACCAACTCCGCCCTCGCCTACAGCCTCACCGTCGACCTCACCGTCCGCAACCCCAACAAGCGCGTCGGCCTCTACTACGACAACGTCGAGTCCCTCGCCCTCTTCGACGGCCAGCGCTTCGGCTACGCCCCCCTCGACTCCTTCTACCAGTCCACCGAGGCATCCACCAAGCTCTCCCCCGCCTTCAAGGGCCAGCAGCCGCTCCAAGGCGACATCACCGCCGCCAACTTCAGGTCGCAGCAGACCGCCGGCAAGTTCGACATCGAGGTCAAGCTCAACGCCAAGCTCAGGGTCAAGGTCTGGGCCTTCAAGGTTCCCGGACCCAAGGCCAAGATCAGCTGCCCCATCACCGTCCCAGCGTCCGCCCCCAACGCCCCCGCATTCCAGCGCACCGACTGCAAAGTCTGGTTCTGA
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| Protein seq | MGSASRAVSCLCCPCKCLACGLFSCLCSILISLLVTLGVLALIFYLIFRPHMIAATVDSAALTQFTLSTNSALAYSLTVDLTVRNPNKRVGLYYDNVESLALFDGQRFGYAPLDSFYQSTEASTKLSPAFKGQQPLQGDITAANFRSQQTAGKFDIEVKLNAKLRVKVWAFKVPGPKAKISCPITVPASAPNAPAFQRTDCKVWF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.844505 | 3.748816 | 1.854697 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0864500 | RBH | 4.389779 | 3.533591 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58850 | RBH | 5.780237 | 2.454339 | 0.455954 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0685300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031670 | RBH | 0.494611 | 17.484056 | 11.499963 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032460 | RBH | 0.110270 | 5.523289 | 4.075183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032020 | RBH | 1.623154 | 18.484327 | 3.929342 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031860 | RBH | 0.179769 | 1.055986 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032130 | RBH | 6.835779 | 73.743744 | 9.098882 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0553700 | RBH | 4.584529 | 120.31604 | 3.7691255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030750 | RBH | 0.208076 | 2.591626 | 0.367725 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0559600 | RBH | 6.7671885 | 122.135311 | 3.4995925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031230 | RBH | 0.141751 | 0.373682 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031020 | RBH | 0.392259 | 33.775047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031160 | RBH | 0.0 | 40.332397 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031730 | RBH | 0.960332 | 2.637248 | 2.096776 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031730 | RBH | 0.205154 | 12.043517 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031210 | RBH | 0.0 | 3.939499 | 2.938705 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030950 | RBH | 0.404122 | 31.944786 | 8.007122 |
