Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0864500 | OGI:01111040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:37412047-37413011 | ||||||||
| Gene Symbol | OsSDS1 | ||||||||||
| DNA seq | CATTCGTGCATAAATACATATAGCTCCATCTATTCATTCGTGCATATACAAATACATGTTTTCGAAAGAATTTTCTACAAGCTGAACAAATTAAATAAAGCATGGCAGACTGTGTCGTGTCGTTCCCAGCCGAGGAGTTCGATCATGCCTCCATGTCGTATCAGTGACACGAACACGTCAATAGTCCACGTCGCACTTCGGCTGCTTCCTCGTGAACACCGTCGTCGGCGTCCCGCTCGCGGTGCCGTTGCCGGAGTTGGGCGCCGGCAGGTTCAGCGTGCAGGTGAATTTGCTCTTGTTGTTCAGCCTGAAGCCCCTGACCTTGAATCCTTGTCTAGCGTACACCCTGACCTTAACCTCGTAAGACCCCTGCGCCGTCTCCCTCCGGTATGTGCGCTCCACGTCGCGGTCGTCGATGGCCGCCGAGCCGCTCAGCGTCACGTCGAACCTGGCGTCGCTCTTCCGACCAACGTATAACGGCTGCAGCGGCGCGTACCCGAACCGGTCGCCGTCGTAGGACGCCTGCGCGTCGACGCTCCTGAAGTTGATGCCGAAGCGGTTGGGGTTGCGCACGCGCATGCCCACGGTGAGGTTGTACACGAGGAGGCTGCCGCCGTTGGTGAGGTCGAAGCGGGACAGCGCAGCGGTGTCGGCGTAGGCCTTGACGACGCTGGGGCGGTAGATGAGCCAGAGGACGAGGACGGCGGTGCCGAGCGCGATGACGGCGACGGCGAGCACCCTGAAGAGGCAGCAGAACAGACGGTGCGCGCCGCTCCGGCGTGGCGCGGGCGGAGGCGCCGCTGCGCCGTAGTACGCTGCCGCCGGTGGCGGCGGGATCGGCGGGCCGTAGTACGCGTCGTTCAGCGGCGGCTGCGGCTTCCCGTAGGCTGCCATGATCGTAGCTAGTTGTGACAATTGATCTGCTTAGAATTATATGGGAGAGATCGAACGAGTGATGGATGAAT
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| CDS seq | ATGGCAGCCTACGGGAAGCCGCAGCCGCCGCTGAACGACGCGTACTACGGCCCGCCGATCCCGCCGCCACCGGCGGCAGCGTACTACGGCGCAGCGGCGCCTCCGCCCGCGCCACGCCGGAGCGGCGCGCACCGTCTGTTCTGCTGCCTCTTCAGGGTGCTCGCCGTCGCCGTCATCGCGCTCGGCACCGCCGTCCTCGTCCTCTGGCTCATCTACCGCCCCAGCGTCGTCAAGGCCTACGCCGACACCGCTGCGCTGTCCCGCTTCGACCTCACCAACGGCGGCAGCCTCCTCGTGTACAACCTCACCGTGGGCATGCGCGTGCGCAACCCCAACCGCTTCGGCATCAACTTCAGGAGCGTCGACGCGCAGGCGTCCTACGACGGCGACCGGTTCGGGTACGCGCCGCTGCAGCCGTTATACGTTGGTCGGAAGAGCGACGCCAGGTTCGACGTGACGCTGAGCGGCTCGGCGGCCATCGACGACCGCGACGTGGAGCGCACATACCGGAGGGAGACGGCGCAGGGGTCTTACGAGGTTAAGGTCAGGGTGTACGCTAGACAAGGATTCAAGGTCAGGGGCTTCAGGCTGAACAACAAGAGCAAATTCACCTGCACGCTGAACCTGCCGGCGCCCAACTCCGGCAACGGCACCGCGAGCGGGACGCCGACGACGGTGTTCACGAGGAAGCAGCCGAAGTGCGACGTGGACTATTGA
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| Protein seq | MAAYGKPQPPLNDAYYGPPIPPPPAAAYYGAAAPPPAPRRSGAHRLFCCLFRVLAVAVIALGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMRVRNPNRFGINFRSVDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAIDDRDVERTYRRETAQGSYEVKVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNGTASGTPTTVFTRKQPKCDVDY |
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| Function | NDR1/HIN1-like protein 10 [UniProtKB/Swiss-Prot:Q9SJ52] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0864500 | OsNip_01t0864500-01 | Chr01 | 37412047 | 37413011 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCCTACGGGAAGCCGCAGCCGCCGCTGAACGACGCGTACTACGGCCCGCCGATCCCGCCGCCACCGGCGGCAGCGTACTACGGCGCAGCGGCGCCTCCGCCCGCGCCACGCCGGAGCGGCGCGCACCGTCTGTTCTGCTGCCTCTTCAGGGTGCTCGCCGTCGCCGTCATCGCGCTCGGCACCGCCGTCCTCGTCCTCTGGCTCATCTACCGCCCCAGCGTCGTCAAGGCCTACGCCGACACCGCTGCGCTGTCCCGCTTCGACCTCACCAACGGCGGCAGCCTCCTCGTGTACAACCTCACCGTGGGCATGCGCGTGCGCAACCCCAACCGCTTCGGCATCAACTTCAGGAGCGTCGACGCGCAGGCGTCCTACGACGGCGACCGGTTCGGGTACGCGCCGCTGCAGCCGTTATACGTTGGTCGGAAGAGCGACGCCAGGTTCGACGTGACGCTGAGCGGCTCGGCGGCCATCGACGACCGCGACGTGGAGCGCACATACCGGAGGGAGACGGCGCAGGGGTCTTACGAGGTTAAGGTCAGGGTGTACGCTAGACAAGGATTCAAGGTCAGGGGCTTCAGGCTGAACAACAAGAGCAAATTCACCTGCACGCTGAACCTGCCGGCGCCCAACTCCGGCAACGGCACCGCGAGCGGGACGCCGACGACGGTGTTCACGAGGAAGCAGCCGAAGTGCGACGTGGACTATTGA
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| Protein seq | MAAYGKPQPPLNDAYYGPPIPPPPAAAYYGAAAPPPAPRRSGAHRLFCCLFRVLAVAVIALGTAVLVLWLIYRPSVVKAYADTAALSRFDLTNGGSLLVYNLTVGMRVRNPNRFGINFRSVDAQASYDGDRFGYAPLQPLYVGRKSDARFDVTLSGSAAIDDRDVERTYRRETAQGSYEVKVRVYARQGFKVRGFRLNNKSKFTCTLNLPAPNSGNGTASGTPTTVFTRKQPKCDVDY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.389779 | 3.533591 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0685300 | RBH | 8.844505 | 3.748816 | 1.854697 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64470 | RBH | 2.830727 | 2.324112 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0864500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0041350 | RBH | 0.223724 | 7.889346 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041250 | RBH | 0.0 | 0.0 | 0.662098 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0040720 | RBH | 0.0 | 0.002724 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040280 | RBH | 1.046836 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0615800 | RBH | 2.372022 | 87.0234035 | 0.4140875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039960 | RBH | 0.0 | 0.100742 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0614900 | RBH | 2.7113295 | 169.0698165 | 0.2812745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040260 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040500 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040460 | RBH | 0.000000 | 0.234652 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040780 | RBH | 0.0 | 1.778855 | 0.354843 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0040450 | RBH | 0.0 | 10.460702 | 0.0 |
