Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_04g0630000 OGI:04094350 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr04:32043598-32048576
Gene Symbol -
DNA seq

GCGGCGGCCTAGGGTTTTAGCATTCTCACCTCAGCGGCGGCGGCGGCGGGGGACACCGGATTTTCCGCTCCGATGCCTCGTCAGCACGCGCCGGCGTTCACGCCGGAGGCGGCGTCGGCGTCGGCCACCGGCGGGGCCGGGGAGCGGCAGAGCCTCCCGGCGCTGCAGGCGAAGATGAAGCGCGACCCGGAGGGGTACGAGGAGGAGCTCCGCCAGCTGCGGCGCCACTTCGAGTCATCGGTGTTCCTCTTCCGGCAGCAGGCGGCACTGGCCTCCACGTCCTCGTCCGGCGGCGGAGGGGAGGTGGCCAAGGAGCTCGGCGACCTCGCGCTGTTCCTCGCCCACGTCGCGCCCTTCTACCCGGACGACCTCGCTGACTTGCCCGACCAGATTGGTGGCCTGCTTGACACCAACGCGCGCGCGCTGCCGTCCGGGCTCCGTGTGCACCTCGTGCAGGCGCTGATACTACTGGTGAATCGGAAGGTGACGCCTGTTTAGTTCATCTGTTCATTTCACATTAAGTTAAATTTTGTTCAAATCGTGTGGATTGGAACGGGATTATCGTATGACTGTAGAGTAAATTCTCCTCGTATACATTGCTTTTTGATGTTTAGATTGTTGATCTGGAGGACACAATGGAGTTATTTATGGAGCTTCAAGTTATAGGGGACCGGGCTGTCAAAAAACTAGCATTCTCACATATTGTACACAGTATCAGGAGAATGAATCAGACCCACAAGAATGAAGCCAGGAATCGTAAACTGCAAAACATCCTTTTCACATTCCTACAGGTTTGTGACATACCACTATACCACACTTGCACTGATTAGTATTATCGGGTTTAACATAGTGGCAAGAATACATTCATGATTCTCTTCCTACCTCGTTTAGTTATGCATCTTGCTTCGCTGTTTCCCAGGGCGAGGAAGAGTCGAGAGCAAAGAGGGCCTTTACTATTCTATGTGATCTTCACCGTCGGAGGGTCTGGTTTGATGACCGCACAGCAAATGCTATATGCAATGCTTGTTTCCATGGTTCTTCTAGGTACATACTGCCAGCATCTTTGTGTTTATTAATAGGTGTTGATCTAAAATATATCTTTTACATGCAGAATTATGATAGCCGCTATTTCATTCCTTCTTGGGTATGAAAACGTTGAGCAAGAAGATGATAGTGATGCATCCAGCAGTGAAGATGAAGCTCAAAACCCTCAAATTATTCTTAGTAAAGAGGATGTTTACAAGGTTATTTGAATTTTTACCATTATTTCGATTTATAGTGTTTTACATCTTTTTTCTGTTACGTGCCTTCTGATATAATGTATTTTATTGTCATATTACTTTCTCAGGCAAATCACAAGGGCACTGCTGCTACTAAGAAAAAGAAGAAAGCTAAATTGCAGCGTGTGATTCGTAGTATGAAAAGGCAACAACGTAAATCCACTGAGGACACTGGCTCCAATTATTATTCACCACTGACGTATTTAAAGGATCCTCAGGTGGGAAATGGTGTAATCCCATAATTGTTCAGAGTGTTATCATTTACATATTGACTGTTATATTGAAGCTTTCGTTTTTTGGCTGACAGGGTTTTGCTGAGAAGCTCTTCTCTCGGCTCCAGAAATGCAATGAGCGGTTTGAGGTTGGCCCCATTCCTTGTTCTGAAGATTCCTTGTTCTGTAAAGATTTAAAAAGTTATATATAATTGTCAGAACTATCATTACTTAGTACTTTTAGCTTTCTGCTGAAGTTTTATACATGAGTGTATATAGTTGGAACCAGCATTCAAGTAGGAGAATTGGAACCCAGATGTGCAATAGTTTATTTTTTAAACACAATGTCTGTTGTGAGTTCCATCCGATGGTTAAACGAAAATAAACGTTAATTCAAATTTAGAGAATGTTGGTTGGGTGCTTGCAGGTAAGGATGATGATGTTAAAGGTTATAGCGAGGACTATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTATCCATATCTTCAAAGATACGTTCAGGTATGTTCTTAACTTGGCATGTGTTCTTCTTGTAGCAACCTTATGGTAGATATAATGTTTATCTATACTCTATACTAATATAAAAGATGGTAGTGGTGGTGGACCCACGGACTGTGAGTTGCGTATCTCTTAGCCCCCACATGCCATAGATCCCGTCGAAAGGAAAATATGACAATAGAATATTATGAAAATTTTCATCTTTACGAAATGACAGCAAAATTAGCATAATGATAATATAATAGACAATTAGAAAAAAAAACCGTTGCACCTCACGTGCATTATACTAGTTCATACTAGTTTTGATAATAAGTTTTCTACCTTTCTGTGATGCAGCCTCATCAACGAGATGTAACAACTTTACTTGCTGCAGCAGTACAGGCTTGCCATGATATGGTTGAAACACTTTTGCTCTTCTCCTATATTTCACTACTTATATCATTTCTTTTGCTTTGTCCAAATTCAGCTAAATTAATATGCTTCAATTTCAGGTGCCTCCTGATGCAGTTGAACCACTGTTTAAGCAGATAGTAAATCAATTTGTGCATGATCGTTCTCGCCCAGAGGTTTGCATAACACTCATCACATATCTAATATATTTAAGTATTTTCCAACTAACATGGCATATTTCTAACCAATCTCATTTTAGGCTATTGCTGTTGGCTTGAATGTTGTGCGAGAGATCTGCATGAGAATACCTTTGGTACTTACCTTGCTCAAATCTGTACTCTTGCTTTCTAGTGCTACTGACCTCTGACCAGACACCCCTTAAATTTGTGTGATGGATTCATTAAATTTTTATGGTGGTCATGTTTTGTTGTACCTAATTCCTGTGCCCTGGACATGCTCTAGTAGAAATTGTGATTTCATTTTTTTACTAGTCTTAAATGACTGGTTGCGTAGTCCAACTCCAAAGGATGTGATAGTCGATTGCTACAGGTTTTAAGCATATAAGTGTAACTTAATGAAGAATTGAAAAGGTATAAACATGGTTTTACCAGGCCACATTTAGTCTTGTGTAGCCTGACACGTTAGTCACTTATGCATGAGAAGTTGAGAACACACATGCAGGTTTGTATACTACATTACCACCTGAGGTACTGTGCGGGTTGTAAGATATTTAGGAAGATATTCTTGGTCTATTTATTTTATTCATCTAGCAGGCCTCTGTTAATCCTTCTGTTATACCTGCAGTTGATGAATGAAGATCTACTCCAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGGTCAGTTCTTATCCTTTTGCATATTCTGTGATTTCTTTTTGTTCACTTCAGCTAAACCTTCTTTTGGTTTGGGTTCAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGATGATTCTGATGAAGGCTCTGATCAGGATGATGACAGTGACCAGGATGATAAGTCAAAAAACAGCAGTCGCAAGGCAAATAAGAGAAAGTTGAGTGATTATATAGGGCAACTTAATGCTGCAGATGCAAGCCTTCGAGCTCTGAAGAAGTTGGCAGGAGCCAAGAAGGCTGAAGCTTCGTGCGATGAAGCTGGTAAAATCTTATCTGATGAAGATTTTAAGCGTATTAAGGAGCTAAAGGTATGGGAGTTTTTTCCAGCTGTAGTTCATGCTGTGGAGCTTTCTTTTGGGAAAGAAAGTGAAGTTGTGTATATCTGACATTGTTATGAGTTTCAGGCAAAAAAAGAAGCAAAACTGGCTCTGGCACAACATGGACTCGGCAAGGGCCATGACACAAAATCAGTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGTGCATTTTCTCTCTTCCCCTCCCGCATTGCACTCGTGCCAGCGCGCTCATGCACACACATCCACACTTTGCTTATATGAACATCTTCCTTTATGTAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGGTATTCGTTTATATGATCCTCCTTTTTGGTGCTTATTTTGACCTATGTTGGCTATATGGCACAACCTTGTGAAATCTGATCATGAATTGTTCTTTCGTAGTTGCTTTTATTCCTTCTCTACTTATATGCTTCTCATTGCGTTTTAGACCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGAGGGATTTTTTGTACTTGCGTTTGCCAATTCTTGTGGTCTACTGGCCAAAATTTTGACTCCTTCAGTTAATGATTTTCGTATACAAATATGGTTTCACAAACCGTGTATCATCGATTTTTCAAGTGCTGGTGTATTCTTTTGTGAGTGGAGAGAATGAAGCCGGTATATCATCGCTC

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CDS seq

GATGATAGTGATGCATCCAGCAGTGAAGATGAAGCTCAAAACCCTCAAATTATTCTTAGTAAAGAGGATGTTTACAAGGCAAATCACAAGGGCACTGCTGCTACTAAGAAAAAGAAGAAAGCTAAATTGCAGCGTGTGATTCGTAGTATGAAAAGGCAACAACGTAAATCCACTGAGGACACTGGCTCCAATTATTATTCACCACTGACGTATTTAAAGGATCCTCAGGGTTTTGCTGAGAAGCTCTTCTCTCGGCTCCAGAAATGCAATGAGCGGTTTGAGGTAAGGATGATGATGTTAAAGGTTATAGCGAGGACTATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTATCCATATCTTCAAAGATACGTTCAGCCTCATCAACGAGATGTAACAACTTTACTTGCTGCAGCAGTACAGGCTTGCCATGATATGGTGCCTCCTGATGCAGTTGAACCACTGTTTAAGCAGATAGTAAATCAATTTGTGCATGATCGTTCTCGCCCAGAGGCTATTGCTGTTGGCTTGAATGTTGTGCGAGAGATCTGCATGAGAATACCTTTGTTGATGAATGAAGATCTACTCCAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGATGATTCTGATGAAGGCTCTGATCAGGATGATGACAGTGACCAGGATGATAAGTCAAAAAACAGCAGTCGCAAGGCAAATAAGAGAAAGTTGAGTGATTATATAGGGCAACTTAATGCTGCAGATGCAAGCCTTCGAGCTCTGAAGAAGTTGGCAGGAGCCAAGAAGGCTGAAGCTTCGTGCGATGAAGCTGGTAAAATCTTATCTGATGAAGATTTTAAGCGTATTAAGGAGCTAAAGGCAAAAAAAGAAGCAAAACTGGCTCTGGCACAACATGGACTCGGCAAGGGCCATGACACAAAATCAGTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGA

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Protein seq

DDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMMMLKVIARTIGLHHLVLLNFYPYLQRYVQPHQRDVTTLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAIAVGLNVVREICMRIPLLMNEDLLQDLVLYKKSHEKAVSIAARSLITLFREICPSLLVKKDRGRPADPKARPKAFGEATIASDVPGAELLDEDFSSEGEGSDDESDAFDSNDEKELQSARGTKQNLDGSSEANKLDTDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADASLRALKKLAGAKKAEASCDEAGKILSDEDFKRIKELKAKKEAKLALAQHGLGKGHDTKSVTFKMPSSDQLSLKRVDPSKLEAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGGLSNRQKQHKKKMPLAASRAKAARSRQEKKKLQKRSGKQFRGRKAWK

Function Protein SDA1 homolog [UniProtKB/Swiss-Prot:Q7KKH3]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_04g0630000 OsNip_04t0630000-01 Chr04 32044764 32048497 + RAP2018-11-26
CDS seq

GATGATAGTGATGCATCCAGCAGTGAAGATGAAGCTCAAAACCCTCAAATTATTCTTAGTAAAGAGGATGTTTACAAGGCAAATCACAAGGGCACTGCTGCTACTAAGAAAAAGAAGAAAGCTAAATTGCAGCGTGTGATTCGTAGTATGAAAAGGCAACAACGTAAATCCACTGAGGACACTGGCTCCAATTATTATTCACCACTGACGTATTTAAAGGATCCTCAGGGTTTTGCTGAGAAGCTCTTCTCTCGGCTCCAGAAATGCAATGAGCGGTTTGAGGTAAGGATGATGATGTTAAAGGTTATAGCGAGGACTATTGGGCTGCATCACTTGGTTTTGTTGAACTTCTATCCATATCTTCAAAGATACGTTCAGCCTCATCAACGAGATGTAACAACTTTACTTGCTGCAGCAGTACAGGCTTGCCATGATATGGTGCCTCCTGATGCAGTTGAACCACTGTTTAAGCAGATAGTAAATCAATTTGTGCATGATCGTTCTCGCCCAGAGGCTATTGCTGTTGGCTTGAATGTTGTGCGAGAGATCTGCATGAGAATACCTTTGTTGATGAATGAAGATCTACTCCAGGACCTTGTTTTATACAAAAAGTCCCATGAAAAAGCTGTTTCCATTGCCGCTCGTTCTCTAATTACTTTATTCCGGGAGATCTGTCCTTCTCTGCTAGTCAAGAAAGATCGTGGGCGTCCTGCTGATCCGAAGGCTCGACCAAAAGCATTCGGCGAAGCAACTATCGCTTCTGATGTGCCTGGAGCTGAGTTGCTAGATGAAGATTTTTCATCAGAAGGGGAAGGCTCAGACGATGAGTCTGATGCTTTTGATTCTAATGATGAGAAAGAGTTGCAATCTGCTCGTGGTACTAAACAAAATTTGGATGGTTCGTCTGAAGCAAACAAGCTTGACACAGATGAAGGTATGAAAGAGGAAGATCAACTATCTGGGGATGAAGATGATACAGAGGAACTAGATGAGGATCAAGACATCTCTGACAATGATAGTGAAGAAAATGATGATGAGCTAGAATTGGACTCTGATATGGATGAGGAGAATGATGTATCTGAATCTGATGATGATGAGGAACTCAGTGAGAAATTGGATGATTCTGATGAAGGCTCTGATCAGGATGATGACAGTGACCAGGATGATAAGTCAAAAAACAGCAGTCGCAAGGCAAATAAGAGAAAGTTGAGTGATTATATAGGGCAACTTAATGCTGCAGATGCAAGCCTTCGAGCTCTGAAGAAGTTGGCAGGAGCCAAGAAGGCTGAAGCTTCGTGCGATGAAGCTGGTAAAATCTTATCTGATGAAGATTTTAAGCGTATTAAGGAGCTAAAGGCAAAAAAAGAAGCAAAACTGGCTCTGGCACAACATGGACTCGGCAAGGGCCATGACACAAAATCAGTAACCTTTAAAATGCCTTCTTCTGATCAGCTTAGTCTGAAACGGGTTGACCCATCCAAGCTTGAGGCTCACATAAAGAGAAAGCTTACGAAAGAGGAGAGATTAGAAATGGTGAAGGCTGGAAGAGAGGATAGAGGAAAATACCAAGCAAGAACAGCTGTGAAACAGAAAAAGACCGGTGGCTTGAGCAATAGGCAGAAACAACACAAGAAGAAAATGCCCCTCGCTGCAAGCAGAGCGAAGGCAGCGCGTTCTCGACAGGAGAAGAAAAAACTGCAAAAGCGCTCGGGAAAGCAATTCAGAGGACGGAAGGCGTGGAAATGA

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Protein seq

DDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMMMLKVIARTIGLHHLVLLNFYPYLQRYVQPHQRDVTTLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAIAVGLNVVREICMRIPLLMNEDLLQDLVLYKKSHEKAVSIAARSLITLFREICPSLLVKKDRGRPADPKARPKAFGEATIASDVPGAELLDEDFSSEGEGSDDESDAFDSNDEKELQSARGTKQNLDGSSEANKLDTDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADASLRALKKLAGAKKAEASCDEAGKILSDEDFKRIKELKAKKEAKLALAQHGLGKGHDTKSVTFKMPSSDQLSLKRVDPSKLEAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGGLSNRQKQHKKKMPLAASRAKAARSRQEKKKLQKRSGKQFRGRKAWK

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Gene Transcript Chromosome Start End Strand Source
OsNip_04g0630000 OsNip_04t0630000-02 Chr04 32043598 32048576 + IsoSeq
CDS seq

CGGCGGCCTAGGGTTTTAGCATTCTCACCTCAGCGGCGGCGGCGGCGGGGGACACCGGATTTTCCGCTCCGATGCCTCGTCAGCACGCGCCGGCGTTCACGCCGGAGGCGGCGTCGGCGTCGGCCACCGGCGGGGCCGGGGAGCGGCAGAGCCTCCCGGCGCTGCAGGCGA

Protein seq

RRPRVLAFSPQRRRRRGTPDFPLRCLVSTRRRSRRRRRRRRPPAGPGSGRASRRCRR

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 4.120265 3.893326 6.455585

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g53770 RBH 2.600832 2.477653 1.093582
Nipponbare | IRGSP 1.0 | RAP-db Os04g0630000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0027650 RBH 1.490542 5.512845 6.722217
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0028440 RBH 0.277184 3.437853 2.027493
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0028150 RBH 2.808039 8.278664 10.658815
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0027930 RBH 0.217454 0.477889 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0028170 RBH 4.187451 18.493309 19.812572
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0505600 RBH 7.462083 16.9247685 10.273817
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0026870 RBH 0.712075 0.429058 1.499431
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0509400 RBH 7.231464 13.09678 20.1832915
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0027260 RBH 0.200597 0.230410 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0027110 RBH 0.509814 4.906676 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0027140 RBH 4.750261 17.519777 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0027690 RBH 1.066968 0.879323 1.112014
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0027780 RBH 0.498161 4.237773 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G027070 RBH 0.573756 3.917169 3.379710
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0027000 RBH 2.618631 14.943592 3.342453
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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