Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0027000 | OGI:04094350 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:31992120-31997275 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgactacctcTTgccatcggttctCccgggaagttttgcggcggcctagggttttagcattctcacctcagcggcggcggcggcGggggacaccggattttccgctccgatgcctcgtcagcacgcgccggcgttCAcgccggaggcggcgtcggcgtcggccaccgGCggggccggggagcggcagagcctCccggcgctgcaggcgaagatgaagcgcgacccggaggggtacgaggaggagctccgccagctgcggcgccacttcGagtcatcggtgttcctcttccggcagcAggcggcactggcctccacgtcctcgtccggcggcggaggggaggtggccaaggagctcggcgacctcgcgctgttcctcgcccacgtcgcgcccttctacccggacgacctcgctgacttgcccgaccagattggtggcctgcttgacaccaAcgcgcgcgcgcTGCcgtCcgggctccgtgtgcacctcgtgcaggcgctgatactactggtgaatcggaaggtgacgcctgtttagttcatctgttcaTttcacattAagttaaattttgttcaaatcgtgtggatTggaacgggatTAtcgtatGactgtagagtaaattctcctcgtatacattgctttttgatgtttagattgttgatctGgaggacacaatggagttatttatggagcttcaagttataGgggaccgggctgtcAAAaaactagcattctcacataTtgtacacagtatcaggagaatgaatcagacccacaagaatgaagccaGgaatcgtaaactgcaaaacatccttttcacattcctacaggtttgtgacataccactataccacacttgcactgattaGtattatcggGTttAacatagtggcaagaatacattcatgattctcttcctacctcgtttagttatgcatcttgctTcgctgtttcccagggCgaggaagagtcgagagcaaagagggcctttactattctatgtgatcttcaccgtcggaGggtctggtttgatgaccgcacagcaaatgctatatgcaatgcttgTttccatggttcttctaggtacatactgccagcatctttgtgtttattaATtggtgttgatctaaaatatatcttttacatGCAgaattaTgatagccgctatttcattccttcttgggtatgaaaacgttgagcaagAagatgatagtgatgcatccagcAgtgaagatgaagctcaaaaccctcaaattattcttagtaaAGaggatgTttacaaggttatttgaatttttaccattatttcgatttatagtgttttacatcttttttctgttacgtgccttctgatataatgtattttATtgtcatattActttctcaggcaaatcacAagggcactgctgctactAagaaaaagaagaaagctaaattgcagcgtgtgattcgtagtatgAaaaggcaacaacgtaaatccActgaggacacTggctccaattaTtattcaccactgacgtatttaaaggatcctcaggtgggAaatggtgtaatcccataattgttcagagtgttatcaTttacatattgactgttatattgaagctttcgttttttggctgacagggTtttgctgagaagctcttctctcggctccagaaatgcaatgagcggtttgaggttggccccaTtccttgttctgaagattccttgttctgtaaagatttaaaaagttatatataattgtcagaactatcattacttagtacttttagctttctgctgaagttttAtacatgagtgtatatagttggaaccagcattcaagtaggagaaTtggaacccagatgtgcaatagtttattttttaaacacaatgtctgttgtgagttccatccgatggttaaacgAaaataaacgttaattcaaatttagagaatgTtggttgggtgcttgcaggtAaggatgatgatgttaaaggttatagcgaggactattgggctgcatcacttGgttttgttgaacttctatccatatcttcaaagatacgttcaggtatgttcttaacttggcatgtgttcttcttgtagcaaccttatggtagatataatgtttatctatactctatactaatataaaagatggtagtggtggtggacccacggactgtgagttgcgtatctcttagcccccacatgccATagatcccgtcgaaaggaaaatatgacaatagaatattatgaaaaTtttcatctttacgaaatgacagcAaaattagcataatgataataTaatagacaattagaaaaaaaaaccgttgcacctcacgtgcattatactagttcatactagttttgataataagttttctacctttctgtgatgcagcctcatcaacgagatgtaacaactttActtgctgcagcagtacaggcttgccatgatatggttgaaacacttttgctcttctccTAtatttcactacttatatcatttcttttgctttgtccaaaTtcagctaaattaatatgcttcaatttcaggtgcctcctgatgcagttGAaccactgtttaagcagatagtaaatcaatttgtgcatgatcgttctcgcccagaGgtttgcataacactcatcacatatctAatatatttaagtattttccaactaacatggcatatttctaaccaatctcattttaggctattgctgttggcTtgaatgttgtgcgagagatctgcatgagaatacctttggtacttaccttgctcaaatctgtactcttgctttctagtgctactgacctctgaccagacaccccttAaatttgtgTgatGgattcattAaatttttatggtggtcatgttttgttgtacctaattcctgtgccctggacatgctctagtagaaattgtgatttcatttttttactagtcttaaatgactggttgcgtagtccaaactccaaaaggatgtgatagtcgattgctacaggTtttaagcatataagtgtaacttaatgAagaattgaaaaggTAtaaacatggttttaccaggccacatttagtcttgtgtagcctgacacgttagtcacttatgcatgagaagttGagaacacacatgcaGgtttgtatactacattaccacctgaggtactgtgcgggttgtaagatatttaggaagatattcttggtctatttattttattcatctagcaggcctctgttaatccttctgTtatacctgcagttgatgaatgaagatctactccAggaccttgttttatacAaaaagtcccatgaaaaagctgtttccattgccgctcgttctctaattactttattccgggaggtcagttcttatccttttgcatattctgtgatttctttttgttcacttcagctaaaccTtcttttggtttgggttcagatctgtccttctctgctagtcaagAaagatcgTgggcgtcctgctgatccgaaggctcgaccaaaagcattcggcgaagcaactatcgcttctgatgtgcctggagctgagttgctagatgAagatttttcatcagaaGgggaaggctcagacgatgagtctgatgcttttgattctaatgatgagaaagagttgcaatctgctcgtggtactaaacaaaatttggatggttcgtctgaagcaaacaagcttgacacagatgaaggtatgaaagagGAAgatcaactatctggggatgaagatgatacagAggaactagatgaGgatcaagacatctctgacaatgatagtgaagaaaatgatgatgagctagaattggactctgatatggatgaggagaatgatgtatctgaatctgatgatgatgaggaactcagtgagAaattggatgattctgatgaaggctctgatcaggatgatgacagtgaccaggatgataagtcaaaaaacagcagtcgcaaggcaaataagagaaagttgagtgattatatagggcaacttaatgctgcagatgcaagccttcgagctctgaagaagttggcaggagccaagAaggctgAagcttcgtgcgatgaagctggtaaaatcttatctgatgaagattttaagcgtaTtaaggagctaaaGgtatgggaGtttttTccagctgtagttcatgctgtggagctttcttttggGAaagaaagtgaagttgtgTAtatctgacattgttatgagtttcaggcaaaaaaaGaagcaaaactggctctggcacaacatggactcggcaagggccatgacacaaaatcagtaacctttaaaatgccttcttctgatcagcttagtctgaaacgggTtgacccAtccaagcttgaggtgcattttctctcttcccctcccgcattgcactcgtgccagcgcgctcatgcacacacatccacactttgcttatatgaacatcttccTttatgtaggctcacatAaagagaaagcttacgaaagaggagagattagaaatggtgaaggctggaagagaggatagaggaaaataccaagcaagaacagctgtgaaacagaaaaaggtattcgtttatatgatcctcctttttGgtgcttattttgacctatgttggctatatggcacaaccttgtgAaatctgatcaTgaattgttctttcgtaGttgcttttattccttctctacttAtatgcttctcattgcgttttagaccggtggcttgagcaataggcaGaaacaacacaagaagaaaatgcccctcgctgcaagcagagcgaaggcagcgcgttctcgacaggagaagaaaaaactgcaaaagcgctcgggaaagcAattcagaggacggaaggcgtggaaatgagggaTtttttgtacttgcgtttgccaattcttgtggtctactggccaaaattttgactccttcagttaatgattttcgtatacaaatatggtttcacaaaccgtgtatcatcgatttttcaagtgctggtgtattcttttgtgagtggagagaatgaagccggtatatcatcgctcacagtggTtgctctatgaatttggacagtactcgtatccagaaGgttcagcatcacgtgtcctcctGgcccagtgtctatacgttgcagtgactccagcgagagccacaattacgatatgAtaaatgctgtctctgt
More
|
||||||||||
| CDS seq | atgcctcgtcagcacgcgccggcgttCAcgccggaggcggcgtcggcgtcggccaccgGCggggccggggagcggcagagcctCccggcgctgcaggcgaagatgaagcgcgacccggaggggtacgaggaggagctccgccagctgcggcgccacttcGagtcatcggtgttcctcttccggcagcAggcggcactggcctccacgtcctcgtccggcggcggaggggaggtggccaaggagctcggcgacctcgcgctgttcctcgcccacgtcgcgcccttctacccggacgacctcgctgacttgcccgaccagattggtggcctgcttgacaccaAcgcgcgcgcgcTGCcgtCcgggctccgtgtgcacctcgtgcaggcgctgatactactggtgaatcggaagattgttgatctGgaggacacaatggagttatttatggagcttcaagttataGgggaccgggctgtcAAAaaactagcattctcacataTtgtacacagtatcaggagaatgaatcagacccacaagaatgaagccaGgaatcgtaaactgcaaaacatccttttcacattcctacagggCgaggaagagtcgagagcaaagagggcctttactattctatgtgatcttcaccgtcggaGggtctggtttgatgaccgcacagcaaatgctatatgcaatgcttgTttccatggttcttctagaattaTgatagccgctatttcattccttcttgggtatgaaaacgttgagcaagAagatgatagtgatgcatccagcAgtgaagatgaagctcaaaaccctcaaattattcttagtaaAGaggatgTttacaaggcaaatcacAagggcactgctgctactAagaaaaagaagaaagctaaattgcagcgtgtgattcgtagtatgAaaaggcaacaacgtaaatccActgaggacacTggctccaattaTtattcaccactgacgtatttaaaggatcctcagggTtttgctgagaagctcttctctcggctccagaaatgcaatgagcggtttgaggtAaggatgatgatgttaaaggttatagcgaggactattgggctgcatcacttGgttttgttgaacttctatccatatcttcaaagatacgttcagcctcatcaacgagatgtaacaactttActtgctgcagcagtacaggcttgccatgatatggtgcctcctgatgcagttGAaccactgtttaagcagatagtaaatcaatttgtgcatgatcgttctcgcccagaGgctattgctgttggcTtgaatgttgtgcgagagatctgcatgagaatacctttgttgatgaatgaagatctactccAggaccttgttttatacAaaaagtcccatgaaaaagctgtttccattgccgctcgttctctaattactttattccgggagatctgtccttctctgctagtcaagAaagatcgTgggcgtcctgctgatccgaaggctcgaccaaaagcattcggcgaagcaactatcgcttctgatgtgcctggagctgagttgctagatgAagatttttcatcagaaGgggaaggctcagacgatgagtctgatgcttttgattctaatgatgagaaagagttgcaatctgctcgtggtactaaacaaaatttggatggttcgtctgaagcaaacaagcttgacacagatgaaggtatgaaagagGAAgatcaactatctggggatgaagatgatacagAggaactagatgaGgatcaagacatctctgacaatgatagtgaagaaaatgatgatgagctagaattggactctgatatggatgaggagaatgatgtatctgaatctgatgatgatgaggaactcagtgagAaattggatgattctgatgaaggctctgatcaggatgatgacagtgaccaggatgataagtcaaaaaacagcagtcgcaaggcaaataagagaaagttgagtgattatatagggcaacttaatgctgcagatgcaagccttcgagctctgaagaagttggcaggagccaagAaggctgAagcttcgtgcgatgaagctggtaaaatcttatctgatgaagattttaagcgtaTtaaggagctaaaGgcaaaaaaaGaagcaaaactggctctggcacaacatggactcggcaagggccatgacacaaaatcagtaacctttaaaatgccttcttctgatcagcttagtctgaaacgggTtgacccAtccaagcttgaggctcacatAaagagaaagcttacgaaagaggagagattagaaatggtgaaggctggaagagaggatagaggaaaataccaagcaagaacagctgtgaaacagaaaaagaccggtggcttgagcaataggcaGaaacaacacaagaagaaaatgcccctcgctgcaagcagagcgaaggcagcgcgttctcgacaggagaagaaaaaactgcaaaagcgctcgggaaagcAattcagaggacggaaggcgtggaaatga
More
|
||||||||||
| Protein seq | MPRQHAPAFTPEAASASATGGAGERQSLPALQAKMKRDPEGYEEELRQLRRHFESSVFLFRQQAALASTSSSGGGGEVAKELGDLALFLAHVAPFYPDDLADLPDQIGGLLDTNARALPSGLRVHLVQALILLVNRKIVDLEDTMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQTHKNEARNRKLQNILFTFLQGEEESRAKRAFTILCDLHRRRVWFDDRTANAICNACFHGSSRIMIAAISFLLGYENVEQEDDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMMMLKVIARTIGLHHLVLLNFYPYLQRYVQPHQRDVTTLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAIAVGLNVVREICMRIPLLMNEDLLQDLVLYKKSHEKAVSIAARSLITLFREICPSLLVKKDRGRPADPKARPKAFGEATIASDVPGAELLDEDFSSEGEGSDDESDAFDSNDEKELQSARGTKQNLDGSSEANKLDTDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADASLRALKKLAGAKKAEASCDEAGKILSDEDFKRIKELKAKKEAKLALAQHGLGKGHDTKSVTFKMPSSDQLSLKRVDPSKLEAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGGLSNRQKQHKKKMPLAASRAKAARSRQEKKKLQKRSGKQFRGRKAWK |
||||||||||
| Function | Protein SDA1 homolog [UniProtKB/Swiss-Prot:Q9NVU7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0027000 | OsNaBo_04g0027000.01 | Chr04 | 31992120 | 31997275 | + | NAM | ||
| CDS seq | atgcctcgtcagcacgcgccggcgttCAcgccggaggcggcgtcggcgtcggccaccgGCggggccggggagcggcagagcctCccggcgctgcaggcgaagatgaagcgcgacccggaggggtacgaggaggagctccgccagctgcggcgccacttcGagtcatcggtgttcctcttccggcagcAggcggcactggcctccacgtcctcgtccggcggcggaggggaggtggccaaggagctcggcgacctcgcgctgttcctcgcccacgtcgcgcccttctacccggacgacctcgctgacttgcccgaccagattggtggcctgcttgacaccaAcgcgcgcgcgcTGCcgtCcgggctccgtgtgcacctcgtgcaggcgctgatactactggtgaatcggaagattgttgatctGgaggacacaatggagttatttatggagcttcaagttataGgggaccgggctgtcAAAaaactagcattctcacataTtgtacacagtatcaggagaatgaatcagacccacaagaatgaagccaGgaatcgtaaactgcaaaacatccttttcacattcctacagggCgaggaagagtcgagagcaaagagggcctttactattctatgtgatcttcaccgtcggaGggtctggtttgatgaccgcacagcaaatgctatatgcaatgcttgTttccatggttcttctagaattaTgatagccgctatttcattccttcttgggtatgaaaacgttgagcaagAagatgatagtgatgcatccagcAgtgaagatgaagctcaaaaccctcaaattattcttagtaaAGaggatgTttacaaggcaaatcacAagggcactgctgctactAagaaaaagaagaaagctaaattgcagcgtgtgattcgtagtatgAaaaggcaacaacgtaaatccActgaggacacTggctccaattaTtattcaccactgacgtatttaaaggatcctcagggTtttgctgagaagctcttctctcggctccagaaatgcaatgagcggtttgaggtAaggatgatgatgttaaaggttatagcgaggactattgggctgcatcacttGgttttgttgaacttctatccatatcttcaaagatacgttcagcctcatcaacgagatgtaacaactttActtgctgcagcagtacaggcttgccatgatatggtgcctcctgatgcagttGAaccactgtttaagcagatagtaaatcaatttgtgcatgatcgttctcgcccagaGgctattgctgttggcTtgaatgttgtgcgagagatctgcatgagaatacctttgttgatgaatgaagatctactccAggaccttgttttatacAaaaagtcccatgaaaaagctgtttccattgccgctcgttctctaattactttattccgggagatctgtccttctctgctagtcaagAaagatcgTgggcgtcctgctgatccgaaggctcgaccaaaagcattcggcgaagcaactatcgcttctgatgtgcctggagctgagttgctagatgAagatttttcatcagaaGgggaaggctcagacgatgagtctgatgcttttgattctaatgatgagaaagagttgcaatctgctcgtggtactaaacaaaatttggatggttcgtctgaagcaaacaagcttgacacagatgaaggtatgaaagagGAAgatcaactatctggggatgaagatgatacagAggaactagatgaGgatcaagacatctctgacaatgatagtgaagaaaatgatgatgagctagaattggactctgatatggatgaggagaatgatgtatctgaatctgatgatgatgaggaactcagtgagAaattggatgattctgatgaaggctctgatcaggatgatgacagtgaccaggatgataagtcaaaaaacagcagtcgcaaggcaaataagagaaagttgagtgattatatagggcaacttaatgctgcagatgcaagccttcgagctctgaagaagttggcaggagccaagAaggctgAagcttcgtgcgatgaagctggtaaaatcttatctgatgaagattttaagcgtaTtaaggagctaaaGgcaaaaaaaGaagcaaaactggctctggcacaacatggactcggcaagggccatgacacaaaatcagtaacctttaaaatgccttcttctgatcagcttagtctgaaacgggTtgacccAtccaagcttgaggctcacatAaagagaaagcttacgaaagaggagagattagaaatggtgaaggctggaagagaggatagaggaaaataccaagcaagaacagctgtgaaacagaaaaagaccggtggcttgagcaataggcaGaaacaacacaagaagaaaatgcccctcgctgcaagcagagcgaaggcagcgcgttctcgacaggagaagaaaaaactgcaaaagcgctcgggaaagcAattcagaggacggaaggcgtggaaatga
More
|
|||||||
| Protein seq | MPRQHAPAFTPEAASASATGGAGERQSLPALQAKMKRDPEGYEEELRQLRRHFESSVFLFRQQAALASTSSSGGGGEVAKELGDLALFLAHVAPFYPDDLADLPDQIGGLLDTNARALPSGLRVHLVQALILLVNRKIVDLEDTMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQTHKNEARNRKLQNILFTFLQGEEESRAKRAFTILCDLHRRRVWFDDRTANAICNACFHGSSRIMIAAISFLLGYENVEQEDDSDASSSEDEAQNPQIILSKEDVYKANHKGTAATKKKKKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMMMLKVIARTIGLHHLVLLNFYPYLQRYVQPHQRDVTTLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRPEAIAVGLNVVREICMRIPLLMNEDLLQDLVLYKKSHEKAVSIAARSLITLFREICPSLLVKKDRGRPADPKARPKAFGEATIASDVPGAELLDEDFSSEGEGSDDESDAFDSNDEKELQSARGTKQNLDGSSEANKLDTDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADASLRALKKLAGAKKAEASCDEAGKILSDEDFKRIKELKAKKEAKLALAQHGLGKGHDTKSVTFKMPSSDQLSLKRVDPSKLEAHIKRKLTKEERLEMVKAGREDRGKYQARTAVKQKKTGGLSNRQKQHKKKMPLAASRAKAARSRQEKKKLQKRSGKQFRGRKAWK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.618631 | 14.943592 | 3.342453 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0630000 | RBH | 4.120265 | 3.893326 | 6.455585 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53770 | RBH | 2.600832 | 2.477653 | 1.093582 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0630000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027650 | RBH | 1.490542 | 5.512845 | 6.722217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028440 | RBH | 0.277184 | 3.437853 | 2.027493 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028150 | RBH | 2.808039 | 8.278664 | 10.658815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027930 | RBH | 0.217454 | 0.477889 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028170 | RBH | 4.187451 | 18.493309 | 19.812572 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0505600 | RBH | 7.462083 | 16.9247685 | 10.273817 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026870 | RBH | 0.712075 | 0.429058 | 1.499431 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0509400 | RBH | 7.231464 | 13.09678 | 20.1832915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027260 | RBH | 0.200597 | 0.230410 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027110 | RBH | 0.509814 | 4.906676 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027140 | RBH | 4.750261 | 17.519777 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027690 | RBH | 1.066968 | 0.879323 | 1.112014 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027780 | RBH | 0.498161 | 4.237773 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027070 | RBH | 0.573756 | 3.917169 | 3.379710 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
