Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0623066 | OGI:04092930 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:31660819-31662691 | ||||||||
| Gene Symbol | RGAe, XA1, Xa1(Xe), Xe, Xa1, Xa-1, RGAf, RGAg | ||||||||||
| DNA seq | ACATGTTGATTCCCTAAAAACGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCTGAAAACACTAGTAGTGTTGGGAAACCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATAATTCAAAGATGTGAATCACTTAATTCTCTGGAAGGTTTGCAATTGCTCGGCAATCTCAGGGGGCTGCTGGCACACAGATGCCTCAGCGGCCATGGAGAAGATGGAAGGTGTATCCTTCCGCAATCACTTGAGAAACTTTACATCTGGGAGTACTCTCAAGAGAGGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCAGAAAATACTAGGAGTGTTGGGAAGCCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATGATTCGAAGCTGTGAATCGCTTAATTCTCTGGAAGGCTTGCAATGGCTCGGCAACCTCAGGGTGCTGCGGGCACACAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTACCCTTCCGCAATCACTTGAGGAACTTTACATCCATGAGTATTCTCAAGAAACTCTGCAGCCCTGCTTTTCAGGGAACCTCACTCTCCTGAGAAAATTACAAGTAAAGGGGAACTCAAATTTAGTGTCTCTGCAGCTCCATTCTTGCACATCACTCCAAGAGTTGATAATTGAAAGCTGTAAGTCAATTAATTCGCTGGAAGGCTTGCAATCGCTTGGCAACCTCAGGTTGTTGCGGGCATTCAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTATCCTTCCGCAATCACTTGAGGAACTTTTCATCAGTGAGTATTCTCTAGAAACTCTGCAGCCCTGCTTCCTGACGAATCTCACCTGCTTAAAACAATTAGAGGTATCAGGCACCACAAGTTTAAAATCTCTAGAACTGCAATCATGCACTGCACTCGAACATTTGAAGATTCAAGGTTGTGCGTCGCTTGCTACATTGGAGGGGTTGCAATTCCTCCACGCCCTCAGGCATATGGAAGTATTCAGATGCCCTGGCTTGCCTCCATATTTGGGGAGTTCGTCAGAGCAGGGCTATGAGCTATGCCCACGACTGGAAAGGCTCGACATCGATGACCCCTCTATCCTTACCACGTCGTTCTGCAAGCACCTCACCTCCCTCCAACGCCTAGAGCTTAACTATCGCGGAAGTGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTATTGTCCCTGCAAGAGCTCCGGTTTAAGTCTTGCTACGATCTCGTAGATCTTCCTGCGGGGCTCCACAGCCTTCCCTCCCTCAAGAGGTTGGAGATCTGGTGGTGCAGGAGCATCGCGAGGCTGCCAGAGATGGGCCTCCCACCTTCGTTGGAAGAACTGGTTATCGTAGATTGCAGTGACGAGCTAGCTCATCAGTGCAGAACTCTAGCAAGCAAGCTGAATGTCAAAATTAATGGGGAATATGTGAACTGATTACTCGGTGGCTTGTTAGGCGCACCTTTTTCCACCTGCCCAACTGGCGTGGGCTCGTTCAGGCGTTCAAGCTGCTGTAAATTCCATTGCCGCAATGACGACCTTCAGAACCGTTACACAATACAAAGGACATATGATGGCTAGATCAACTGTCGCAGAGCTAGCTTTGGTTCACCTGAAAACATAAGGCCAAACGCGTGGTTCTTTTAATCAGAAGTATCAAAAATTGGTTTTGGTTTTTAACGAAAAGATGTTAGAAATTGGTTTTAATGTGCCAGATTCTGTACCAGAATTCTGTATTTTGCTCCGTAATTCTGTGCTACGACTGATGTTGTATTTAACTGATAGCAATCGACCGGC
More
|
||||||||||
| CDS seq | CATGTTGATTCCCTAAAAACGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCTGAAAACACTAGTAGTGTTGGGAAACCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATAATTCAAAGATGTGAATCACTTAATTCTCTGGAAGGTTTGCAATTGCTCGGCAATCTCAGGGGGCTGCTGGCACACAGATGCCTCAGCGGCCATGGAGAAGATGGAAGGTGTATCCTTCCGCAATCACTTGAGAAACTTTACATCTGGGAGTACTCTCAAGAGAGGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCAGAAAATACTAGGAGTGTTGGGAAGCCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATGATTCGAAGCTGTGAATCGCTTAATTCTCTGGAAGGCTTGCAATGGCTCGGCAACCTCAGGGTGCTGCGGGCACACAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTACCCTTCCGCAATCACTTGAGGAACTTTACATCCATGAGTATTCTCAAGAAACTCTGCAGCCCTGCTTTTCAGGGAACCTCACTCTCCTGAGAAAATTACAAGTAAAGGGGAACTCAAATTTAGTGTCTCTGCAGCTCCATTCTTGCACATCACTCCAAGAGTTGATAATTGAAAGCTGTAAGTCAATTAATTCGCTGGAAGGCTTGCAATCGCTTGGCAACCTCAGGTTGTTGCGGGCATTCAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTATCCTTCCGCAATCACTTGAGGAACTTTTCATCAGTGAGTATTCTCTAGAAACTCTGCAGCCCTGCTTCCTGACGAATCTCACCTGCTTAAAACAATTAGAGGTATCAGGCACCACAAGTTTAAAATCTCTAGAACTGCAATCATGCACTGCACTCGAACATTTGAAGATTCAAGGTTGTGCGTCGCTTGCTACATTGGAGGGGTTGCAATTCCTCCACGCCCTCAGGCATATGGAAGTATTCAGATGCCCTGGCTTGCCTCCATATTTGGGGAGTTCGTCAGAGCAGGGCTATGAGCTATGCCCACGACTGGAAAGGCTCGACATCGATGACCCCTCTATCCTTACCACGTCGTTCTGCAAGCACCTCACCTCCCTCCAACGCCTAGAGCTTAACTATCGCGGAAGTGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTATTGTCCCTGCAAGAGCTCCGGTTTAAGTCTTGCTACGATCTCGTAGATCTTCCTGCGGGGCTCCACAGCCTTCCCTCCCTCAAGAGGTTGGAGATCTGGTGGTGCAGGAGCATCGCGAGGCTGCCAGAGATGGGCCTCCCACCTTCGTTGGAAGAACTGGTTATCGTAGATTGCAGTGACGAGCTAGCTCATCAGTGCAGAACTCTAGCAAGCAAGCTGAATGTCAAAATTAATGGGGAATATGTGAACTGA
More
|
||||||||||
| Protein seq | HVDSLKTLQLCFPGNLTRLKTLVVLGNQSLTSLQLHSCTALQELIIQRCESLNSLEGLQLLGNLRGLLAHRCLSGHGEDGRCILPQSLEKLYIWEYSQERLQLCFPGNLTRQKILGVLGSQSLTSLQLHSCTALQELMIRSCESLNSLEGLQWLGNLRVLRAHRCLSGYGEYGRCTLPQSLEELYIHEYSQETLQPCFSGNLTLLRKLQVKGNSNLVSLQLHSCTSLQELIIESCKSINSLEGLQSLGNLRLLRAFRCLSGYGEYGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEVSGTTSLKSLELQSCTALEHLKIQGCASLATLEGLQFLHALRHMEVFRCPGLPPYLGSSSEQGYELCPRLERLDIDDPSILTTSFCKHLTSLQRLELNYRGSEVARLTDEQERALQLLLSLQELRFKSCYDLVDLPAGLHSLPSLKRLEIWWCRSIARLPEMGLPPSLEELVIVDCSDELAHQCRTLASKLNVKINGEYVN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0623066 | OsNip_04t0623066-01 | Chr04 | 31660819 | 31662691 | + | RAP2018-11-26 | ||
| CDS seq | CATGTTGATTCCCTAAAAACGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCTGAAAACACTAGTAGTGTTGGGAAACCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATAATTCAAAGATGTGAATCACTTAATTCTCTGGAAGGTTTGCAATTGCTCGGCAATCTCAGGGGGCTGCTGGCACACAGATGCCTCAGCGGCCATGGAGAAGATGGAAGGTGTATCCTTCCGCAATCACTTGAGAAACTTTACATCTGGGAGTACTCTCAAGAGAGGCTGCAGCTCTGCTTTCCAGGAAACCTCACCCGCCAGAAAATACTAGGAGTGTTGGGAAGCCAAAGTTTAACATCTCTGCAGCTCCATTCCTGCACAGCACTCCAAGAGTTGATGATTCGAAGCTGTGAATCGCTTAATTCTCTGGAAGGCTTGCAATGGCTCGGCAACCTCAGGGTGCTGCGGGCACACAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTACCCTTCCGCAATCACTTGAGGAACTTTACATCCATGAGTATTCTCAAGAAACTCTGCAGCCCTGCTTTTCAGGGAACCTCACTCTCCTGAGAAAATTACAAGTAAAGGGGAACTCAAATTTAGTGTCTCTGCAGCTCCATTCTTGCACATCACTCCAAGAGTTGATAATTGAAAGCTGTAAGTCAATTAATTCGCTGGAAGGCTTGCAATCGCTTGGCAACCTCAGGTTGTTGCGGGCATTCAGATGCCTCAGTGGTTATGGAGAATATGGAAGGTGTATCCTTCCGCAATCACTTGAGGAACTTTTCATCAGTGAGTATTCTCTAGAAACTCTGCAGCCCTGCTTCCTGACGAATCTCACCTGCTTAAAACAATTAGAGGTATCAGGCACCACAAGTTTAAAATCTCTAGAACTGCAATCATGCACTGCACTCGAACATTTGAAGATTCAAGGTTGTGCGTCGCTTGCTACATTGGAGGGGTTGCAATTCCTCCACGCCCTCAGGCATATGGAAGTATTCAGATGCCCTGGCTTGCCTCCATATTTGGGGAGTTCGTCAGAGCAGGGCTATGAGCTATGCCCACGACTGGAAAGGCTCGACATCGATGACCCCTCTATCCTTACCACGTCGTTCTGCAAGCACCTCACCTCCCTCCAACGCCTAGAGCTTAACTATCGCGGAAGTGAAGTGGCAAGACTAACGGATGAGCAAGAGAGAGCGCTTCAGCTCCTATTGTCCCTGCAAGAGCTCCGGTTTAAGTCTTGCTACGATCTCGTAGATCTTCCTGCGGGGCTCCACAGCCTTCCCTCCCTCAAGAGGTTGGAGATCTGGTGGTGCAGGAGCATCGCGAGGCTGCCAGAGATGGGCCTCCCACCTTCGTTGGAAGAACTGGTTATCGTAGATTGCAGTGACGAGCTAGCTCATCAGTGCAGAACTCTAGCAAGCAAGCTGAATGTCAAAATTAATGGGGAATATGTGAACTGA
More
|
|||||||
| Protein seq | HVDSLKTLQLCFPGNLTRLKTLVVLGNQSLTSLQLHSCTALQELIIQRCESLNSLEGLQLLGNLRGLLAHRCLSGHGEDGRCILPQSLEKLYIWEYSQERLQLCFPGNLTRQKILGVLGSQSLTSLQLHSCTALQELMIRSCESLNSLEGLQWLGNLRVLRAHRCLSGYGEYGRCTLPQSLEELYIHEYSQETLQPCFSGNLTLLRKLQVKGNSNLVSLQLHSCTSLQELIIESCKSINSLEGLQSLGNLRLLRAFRCLSGYGEYGRCILPQSLEELFISEYSLETLQPCFLTNLTCLKQLEVSGTTSLKSLELQSCTALEHLKIQGCASLATLEGLQFLHALRHMEVFRCPGLPPYLGSSSEQGYELCPRLERLDIDDPSILTTSFCKHLTSLQRLELNYRGSEVARLTDEQERALQLLLSLQELRFKSCYDLVDLPAGLHSLPSLKRLEIWWCRSIARLPEMGLPPSLEELVIVDCSDELAHQCRTLASKLNVKINGEYVN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.651313 | 0.0 | 2.022301 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0626500 | RBH | 1.449855 | 1.839052 | 2.533673 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g53160 | RBH | 0.306931 | 0.0 | 0.390170 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0623066 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027060 | RBH | 0.0 | 1.016113 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027830 | RBH | 0.044086 | 3.340706 | 0.381025 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027580 | RBH | 0.0 | 1.069617 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027230 | RBH | 0.061806 | 0.119009 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027530 | RBH | 0.535266 | 8.511241 | 3.879145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0497900 | RBH | 1.4887885 | 6.9242855 | 1.8798015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026370 | RBH | 0.000000 | 0.286755 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0503700 | RBH | 0.9564555 | 3.0302275 | 0.485191 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026730 | RBH | 0.235404 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026530 | RBH | 0.0 | 3.116111 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026620 | RBH | 3.561647 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027050 | RBH | 0.0 | 0.290305 | 0.070706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027290 | RBH | 0.118455 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026520 | RBH | 0.032749 | 3.892003 | 0.332167 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0026360 | RBH | 0.0 | 0.000000 | 0.000000 |
