Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0534200 | OGI:04080300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:26706730-26708531 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCGATTGGTAAGTGTTTCTTTTTATTTGTGTGTGTGTGAGTGACTGGCGAAGTAAATATTGCACTTCCTTGGTTACAGAATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGCAAGAAGAACTCTGCATCTTGTGACTCGAAATTTCAAAAGGTGCAGCTATTTGCTTATATCTCATGGTACTTTTGAATTCTTCAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGGTAACCCAATGATCTCTCATCTTGTTGCCTTTCTGTTCAAAAGGTTGATACCACATGACATGGTGATAATAACTTAAATTTTGATGTATGCTATTTCTTGCAGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGAACATGGTGTCCTAGATTCGGTGCAGTCACACACAAATTGTCCTGTTCATGTAACAGCTTTTTTTTAGATAATGGATTAGATTAAACCCAGCCTCTACACCTTTGTGGGGTGTACACAGCTAAATGTAACAGCTGAAATGGTTTATGCGTTTGCAGATAATTGATTTTGAGAGATGGAGAGCTCTCCTGACAAAACCAGGGCTCAGCTCTGGCAGCATAGTGAACGGGTCATTCAACAACATCATAGACTCGCGGCACAGGCGTTTCATGGACATCCAGGCCAACACGTTTGCTTTCGGGGTGATTCTGCTGGAGCTGATAAGTGGAAGAGCCCCAGTTTCCAAAGATACAGGAGATCTTGTGGACTGGGTAAGTAACTTGGCCTGAATCATGATTTGACACCAGTAATTCCAGACATTGAATTATCAGATAAATGAAAACCGTGGCACTAGTCTGAAAGTCTGAAACTCTGCAATGTTGGTCCAACTTGGGGTCACAGGCAAGGAAGCACTTGGACCAGACCGAAGAATTCATCAAGCTGGTCGACCCGAAGCTGATGAACGCCAACCATGAGAACCTGGGCATCGTCTGCAACGTGGTGAACCTCTGCATCGACGCCGAGCCGTGCCGGAGACCGTCGATGAACATGATCACCGCCATTCTGGAGGAAGGCATCGACACGTCGCCGGCGACCGTCCTTCGGGACTCCTCCCTGGCATGGGCGGAGGCAGAGATTGCCATCTCGTAGTCGTAGACGGACATGCAATTTGCTGCTACTCGGACAGTAACTACAGAGACGCACACAGTGGTTTTGCCACAAAGGGCTTTTTAACCTTTTTTTTTTCTTTTTGATTCGTGGCTACTGCTTTACGTTTCCTCGGTGCCTTTTTGCCTCTCCCTCTCCCAGATCACATGAAAAATGTGTGGATATTTTGTGAGCGGATTTGATGTGTGATATGTCATATGTGATCTACCCAGGATTT
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| CDS seq | ATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGA
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| Protein seq | MFACVDDDLLANVPKISRQELAEACEDFSNIIGSTHDTVVYKGTMKDGSEIAVVSLSASVHYWTSYVELYFQKEVVEMARLSHENVAKMVGYSKESDPFSRMLVFQYPPNGTLYEHLHDGEGYQLSWPRRMKIALSIARALRYLHTEMQPPFAVAALTSSSVYLTEDFSPKVRLICLCLVTWQ |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 [UniProtKB/Swiss-Prot:C0LGH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0534200 | OsNip_04t0534200-01 | Chr04 | 26706730 | 26708531 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGA
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| Protein seq | MFACVDDDLLANVPKISRQELAEACEDFSNIIGSTHDTVVYKGTMKDGSEIAVVSLSASVHYWTSYVELYFQKEVVEMARLSHENVAKMVGYSKESDPFSRMLVFQYPPNGTLYEHLHDGEGYQLSWPRRMKIALSIARALRYLHTEMQPPFAVAALTSSSVYLTEDFSPKVRLICLCLVTWQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.337661 | 0.876140 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0639100 | SBH | 1.007600 | 0.857224 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45170 | RBH | 0.000000 | 0.206675 | 0.220219 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0534200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0021160 | RBH | 0.000000 | 9.996404 | 0.805691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021920 | RBH | 0.134681 | 2.060713 | 0.102842 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021640 | RBH | 0.190048 | 11.336909 | 1.517212 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021390 | RBH | 0.000000 | 0.041310 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021570 | RBH | 0.000000 | 0.000000 | 2.558758 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0552100 | SBH | 11.040466 | 11.1740255 | 19.0248635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020370 | RBH | 0.108084 | 0.418379 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0420600 | SBH | 1.4627265 | 6.4065645 | 0.2615825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020880 | RBH | 0.057315 | 0.063089 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020710 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020790 | RBH | 0.0 | 6.657788 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0021210 | RBH | 0.000000 | 0.677460 | 0.184198 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021380 | RBH | 0.0 | 4.670510 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020640 | RBH | 0.0 | 0.407434 | 0.157704 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020570 | RBH | 0.0 | 9.218594 | 0.514410 |
