Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
Os04g0534200 OGI:04080300 | 16/16 Nipponbare | IRGSP 1.0 | RAP-db Chr04:26706730-26708531
Gene Symbol -
DNA seq

TCGATTGGTAAGTGTTTCTTTTTATTTGTGTGTGTGTGAGTGACTGGCGAAGTAAATATTGCACTTCCTTGGTTACAGAATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGCAAGAAGAACTCTGCATCTTGTGACTCGAAATTTCAAAAGGTGCAGCTATTTGCTTATATCTCATGGTACTTTTGAATTCTTCAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGGTAACCCAATGATCTCTCATCTTGTTGCCTTTCTGTTCAAAAGGTTGATACCACATGACATGGTGATAATAACTTAAATTTTGATGTATGCTATTTCTTGCAGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGAACATGGTGTCCTAGATTCGGTGCAGTCACACACAAATTGTCCTGTTCATGTAACAGCTTTTTTTTAGATAATGGATTAGATTAAACCCAGCCTCTACACCTTTGTGGGGTGTACACAGCTAAATGTAACAGCTGAAATGGTTTATGCGTTTGCAGATAATTGATTTTGAGAGATGGAGAGCTCTCCTGACAAAACCAGGGCTCAGCTCTGGCAGCATAGTGAACGGGTCATTCAACAACATCATAGACTCGCGGCACAGGCGTTTCATGGACATCCAGGCCAACACGTTTGCTTTCGGGGTGATTCTGCTGGAGCTGATAAGTGGAAGAGCCCCAGTTTCCAAAGATACAGGAGATCTTGTGGACTGGGTAAGTAACTTGGCCTGAATCATGATTTGACACCAGTAATTCCAGACATTGAATTATCAGATAAATGAAAACCGTGGCACTAGTCTGAAAGTCTGAAACTCTGCAATGTTGGTCCAACTTGGGGTCACAGGCAAGGAAGCACTTGGACCAGACCGAAGAATTCATCAAGCTGGTCGACCCGAAGCTGATGAACGCCAACCATGAGAACCTGGGCATCGTCTGCAACGTGGTGAACCTCTGCATCGACGCCGAGCCGTGCCGGAGACCGTCGATGAACATGATCACCGCCATTCTGGAGGAAGGCATCGACACGTCGCCGGCGACCGTCCTTCGGGACTCCTCCCTGGCATGGGCGGAGGCAGAGATTGCCATCTCGTAGTCGTAGACGGACATGCAATTTGCTGCTACTCGGACAGTAACTACAGAGACGCACACAGTGGTTTTGCCACAAAGGGCTTTTTAACCTTTTTTTTTTCTTTTTGATTCGTGGCTACTGCTTTACGTTTCCTCGGTGCCTTTTTGCCTCTCCCTCTCCCAGATCACATGAAAAATGTGTGGATATTTTGTGAGCGGATTTGATGTGTGATATGTCATATGTGATCTACCCAGGATTT

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CDS seq

ATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGA

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Protein seq

MFACVDDDLLANVPKISRQELAEACEDFSNIIGSTHDTVVYKGTMKDGSEIAVVSLSASVHYWTSYVELYFQKEVVEMARLSHENVAKMVGYSKESDPFSRMLVFQYPPNGTLYEHLHDGEGYQLSWPRRMKIALSIARALRYLHTEMQPPFAVAALTSSSVYLTEDFSPKVRLICLCLVTWQ

Function Probable LRR receptor-like serine/threonine-protein kinase At1g63430 [UniProtKB/Swiss-Prot:C0LGH8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
Os04g0534200 Os04t0534200-01 Chr04 26706730 26708531 + irgsp1_rep
CDS seq

ATGTTTGCTTGTGTAGATGATGACTTGCTGGCGAATGTGCCAAAAATAAGTCGGCAAGAGCTTGCAGAAGCCTGTGAAGACTTCAGCAATATCATTGGATCTACTCATGACACGGTGGTGTACAAAGGAACTATGAAGGATGGCAGTGAAATTGCTGTTGTGTCACTATCAGCTTCAGTACATTACTGGACGAGTTACGTTGAGCTGTACTTCCAGAAGGAGGTGGTAGAAATGGCCAGATTGAGTCATGAAAATGTTGCGAAGATGGTGGGATACAGCAAGGAGTCCGATCCATTTTCGAGAATGCTAGTCTTTCAGTACCCACCAAATGGGACACTCTATGAGCATCTTCATGATGGAGAAGGATATCAGCTATCTTGGCCCAGGCGGATGAAAATAGCACTCAGCATTGCTCGCGCCCTCAGATACCTGCACACTGAGATGCAGCCTCCATTTGCAGTTGCTGCACTGACATCAAGTTCAGTTTATCTAACTGAAGATTTCTCCCCAAAGGTCCGTCTCATCTGCTTGTGCCTTGTGACATGGCAATGA

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Protein seq

MFACVDDDLLANVPKISRQELAEACEDFSNIIGSTHDTVVYKGTMKDGSEIAVVSLSASVHYWTSYVELYFQKEVVEMARLSHENVAKMVGYSKESDPFSRMLVFQYPPNGTLYEHLHDGEGYQLSWPRRMKIALSIARALRYLHTEMQPPFAVAALTSSSVYLTEDFSPKVRLICLCLVTWQ

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM None None None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0534200 RBH 0.000000 0.337661 0.876140
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g45170 RBH 0.000000 0.206675 0.220219
Nipponbare | IRGSP 1.0 | RAP-db Os02g0639100 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0021160 RBH 0.000000 9.996404 0.805691
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0021920 RBH 0.134681 2.060713 0.102842
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0021640 RBH 0.190048 11.336909 1.517212
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0021390 RBH 0.000000 0.041310 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0021570 RBH 0.000000 0.000000 2.558758
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0552100 SBH 11.040466 11.1740255 19.0248635
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0020370 RBH 0.108084 0.418379 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0420600 SBH 1.4627265 6.4065645 0.2615825
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0020880 RBH 0.057315 0.063089 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0020710 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0020790 RBH 0.0 6.657788 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0021210 RBH 0.000000 0.677460 0.184198
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0021380 RBH 0.0 4.670510 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G020640 RBH 0.0 0.407434 0.157704
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0020570 RBH 0.0 9.218594 0.514410
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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