Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0480600 | OGI:04073030 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:24044380-24045225 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGTATCACTTTTGATAACTAGATATATACTCCATAGTAATGATACTCCGTAAGTTACATGCCTGCATCGTCAATGAGCATCTCTGTTACTCTTGCTCTTGGTGGCGATGAGCACGAGAGGGTTCTTCTTGCGCACCGCCAGCCCGTTCTCCTCCTCCACGTCCACCTCGCGCCCCGGCAGCGCGCGCCAGTCGAAGCAGAAGAGGAGGTTGGCCAGCAGCAGCTCCGCCGCCGCCGCCGCGAAGTGCACGCCGGGGCAGCTCCTCCGCCCGATCCCGAACGGCACCAGCGCGAACCCGTCGTGCTCGTGCTGCTGCTCGCCGTCGGCGTCGTGGGCGCGGTGGCGCTCGGGCAAGAACCGCTCCGCGTTAGGGCCCCAGACGCCGGGGTCCGTGTGTATCGCCATCGCGTTGATGACGACGCGCGTCCTGGCCGGTATCTCGACGCCGTGCGCCGTGCGGAACGGCTCCGTCGTCTCCCGTTGCACCAGCGGCGACGCCGGGTGGAGCCGGAGTGTCTCCTTGATGACCAGCCGCAGGTAGTGGAGCTCCGGGAGGTCGGCTTCCCGCACCATGGCGCCGTCCTTGTCGCCGCCGCCGCCGCCGGCGATGACGCGGCGCACCTCGTGCTGCGCCTTGGCGAGCACGTCCGGGTTCCTGACGAGCTCCGTCATCGCCCACTGCACCGTCACCGCCGACGTGTCGCTCCCGGCAATGAACATATCCTGCAAGACCACACAATTCGGTTTCGATCGATCAACATGTCCAGGAAAACTGGGAAGCACCAGCGGCGTGGTGTTGGAGTCCTGGGTGCATGACTCCAGTTCATCCACTCAAGTTCAAATCC
More
|
||||||||||
| CDS seq | GTGGATGAACTGGAGTCATGCACCCAGGACTCCAACACCACGCCGCTGGTGCTTCCCAGTTTTCCTGGACATGTTGATCGATCGAAACCGAATTGTGTGGTCTTGCAGGATATGTTCATTGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCATCGCCGGCGGCGGCGGCGGCGACAAGGACGGCGCCATGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTGCGGCTGGTCATCAAGGAGACACTCCGGCTCCACCCGGCGTCGCCGCTGGTGCAACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCATCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCTAACGCGGAGCGGTTCTTGCCCGAGCGCCACCGCGCCCACGACGCCGACGGCGAGCAGCAGCACGAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGCTGCCCCGGCGTGCACTTCGCGGCGGCGGCGGCGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCTGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCGCAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGTAACAGAGATGCTCATTGA
More
|
||||||||||
| Protein seq | VDELESCTQDSNTTPLVLPSFPGHVDRSKPNCVVLQDMFIAGSDTSAVTVQWAMTELVRNPDVLAKAQHEVRRVIAGGGGGDKDGAMVREADLPELHYLRLVIKETLRLHPASPLVQRETTEPFRTAHGVEIPARTRVVINAMAIHTDPGVWGPNAERFLPERHRAHDADGEQQHEHDGFALVPFGIGRRSCPGVHFAAAAAELLLANLLFCFDWRALPGREVDVEEENGLAVRKKNPLVLIATKSKSNRDAH |
||||||||||
| Function | Cytochrome P450 71A1 [UniProtKB/Swiss-Prot:P24465] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0480600 | OsNip_04t0480600-01 | Chr04 | 24044380 | 24045225 | - | RAP2018-11-26 | ||
| CDS seq | GTGGATGAACTGGAGTCATGCACCCAGGACTCCAACACCACGCCGCTGGTGCTTCCCAGTTTTCCTGGACATGTTGATCGATCGAAACCGAATTGTGTGGTCTTGCAGGATATGTTCATTGCCGGGAGCGACACGTCGGCGGTGACGGTGCAGTGGGCGATGACGGAGCTCGTCAGGAACCCGGACGTGCTCGCCAAGGCGCAGCACGAGGTGCGCCGCGTCATCGCCGGCGGCGGCGGCGGCGACAAGGACGGCGCCATGGTGCGGGAAGCCGACCTCCCGGAGCTCCACTACCTGCGGCTGGTCATCAAGGAGACACTCCGGCTCCACCCGGCGTCGCCGCTGGTGCAACGGGAGACGACGGAGCCGTTCCGCACGGCGCACGGCGTCGAGATACCGGCCAGGACGCGCGTCGTCATCAACGCGATGGCGATACACACGGACCCCGGCGTCTGGGGCCCTAACGCGGAGCGGTTCTTGCCCGAGCGCCACCGCGCCCACGACGCCGACGGCGAGCAGCAGCACGAGCACGACGGGTTCGCGCTGGTGCCGTTCGGGATCGGGCGGAGGAGCTGCCCCGGCGTGCACTTCGCGGCGGCGGCGGCGGAGCTGCTGCTGGCCAACCTCCTCTTCTGCTTCGACTGGCGCGCGCTGCCGGGGCGCGAGGTGGACGTGGAGGAGGAGAACGGGCTGGCGGTGCGCAAGAAGAACCCTCTCGTGCTCATCGCCACCAAGAGCAAGAGTAACAGAGATGCTCATTGA
More
|
|||||||
| Protein seq | VDELESCTQDSNTTPLVLPSFPGHVDRSKPNCVVLQDMFIAGSDTSAVTVQWAMTELVRNPDVLAKAQHEVRRVIAGGGGGDKDGAMVREADLPELHYLRLVIKETLRLHPASPLVQRETTEPFRTAHGVEIPARTRVVINAMAIHTDPGVWGPNAERFLPERHRAHDADGEQQHEHDGFALVPFGIGRRSCPGVHFAAAAAELLLANLLFCFDWRALPGREVDVEEENGLAVRKKNPLVLIATKSKSNRDAH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0570500 | RBH | 1.340120 | 1.922802 | 0.345323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40460 | SBH | 0.0 | 0.0 | 0.085798 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0480600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017280 | SBH | 0.0 | 0.000000 | 0.364686 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018070 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017770 | SBH | 0.0 | 0.0 | 0.541063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017500 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017720 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0374300 | SBH | 0.182728 | 0.000967 | 0.211778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016520 | SBH | 0.0 | 0.042867 | 0.037313 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0372900 | SBH | 0.6973305 | 0.0070085 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016880 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016900 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017390 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017500 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016780 | SBH | 0.0 | 0.000000 | 0.100197 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016730 | SBH | 0.0 | 1.128282 | 0.0 |
