Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0408700 | OGI:04063180 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:20224646-20226477 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAACTAGCCCATCCAAGAGTGGCCAAAACTAAATGGAACATGATAGATAAAGTGAAGTGGTCTGCCTAGAATTACCATTTGCATAAGATACACAGGATGGCTATTAAACATATGCAGTAGACATATACAAGGTTGGTAGTAATCACATACAAGGTTGAACAGAGGGAAATGGGATGGCAGTGCATAACTGCATATATATATTCATTGAAAACAGCAGCAATCTATGTCAACATTCAATTTCAGCATATTTACAGGATAAAAAATATTCAAAATAGTGAACAAACAATGTGGACTTGATAACTGAACAAAAAATGAACTATTGGAATTTGGAAAGCGCAAAGTTCGCGATATAACTTGATTCAAAAATTAATTTAAGTTTAAGAAACTAAAAGATCAAGTGTACATCATGGACATCATGGTAAGTAATACTCCCTAATGAATGGCCACCGAATGTATGACCATGCAAAGACTACTGCAATAATCCGACAGATCTAACCCTACCCATAAAAAAAGCAACAAGTGCGTGAATCCATTGGCACTACCATATCAACGGAACAAAAGAAGTATAAGAAGCCCGTAAGTTCCTTACCGCAGAGTCCGCGAACTGATCCGCCATGGCTGACCGGGACCAAACACCTGCAACTCTGGATCCAACGATGGATCAAACTCTGGCGAAAAAAGAAAAAGAAAAAGAGGAGCAATTCTTAATCGAGAAGGGGTTGTATCAATCTCCACCAAACCTCAATCCCTACCTCTCCTTTTTTAGATATTTTATTTAGCCTACGGCAGCTGCTGCACTATTCCGCTGTTCGTGGCCGATCGATCGTCGGGTCTCGCCCTCCCGCTTACGGGATTCGGTTAAGGAGTTCGATGATCTGATAGGATTGGAAGGTGCGAGTGAGGAATACTACTGAAATTTTTGGGGGAGTTCTGAGAGACGGCAGGACGAGGATTCGAGCGAGGAGGAGGGGATCGAAGGGGAAGACAACAATATATTTGGGCAGATGACCCCACCCAGCAGATGGTC
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| CDS seq | ATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGA |
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| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
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| Function | DNA-binding protein S1FA2 [UniProtKB/Swiss-Prot:Q7XLX6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0408700 | OsNip_04t0408700-01 | Chr04 | 20224698 | 20226415 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGA
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| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0408700 | OsNip_04t0408700-02 | Chr04 | 20224646 | 20226477 | - | IsoSeq | ||
| CDS seq | CCATCTGCTGGGTGGGGTCATCTGCCCAAATATATTGTTGTCTTCCCCTTCGATCCCCTCCTCCTCGCTCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATC |
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| Protein seq | PSAGWGHLPKYIVVFPFDPLLLARILVLPSLRTPPKISVVFLTRTFQSYQIIELLNRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.825375 | 2.904997 | 21.569109 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g33440 | RBH | 2.810460 | 1.707054 | 5.560663 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0408700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012350 | RBH | 2.092329 | 100.913033 | 30.746635 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013170 | SBH | 1.663235 | 25.212797 | 21.374359 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012880 | SBH | 11.276484 | 114.519402 | 83.443199 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012500 | SBH | 1.172246 | 4.197772 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012830 | SBH | 64.807030 | 113.732841 | 129.961197 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0318800 | RBH | 8.5416895 | 21.770871 | 27.232099 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011740 | SBH | 1.438176 | 13.881351 | 9.928241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0315700 | RBH | 8.168338 | 15.5865085 | 19.565709 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012320 | SBH | 1.207969 | 1.050883 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011940 | SBH | 6.247502 | 48.935226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011970 | SBH | 20.176132 | 207.476059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012520 | SBH | 4.040506 | 8.355080 | 13.800089 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012750 | SBH | 2.058736 | 50.088398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011880 | SBH | 3.493813 | 37.833382 | 26.254240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011900 | RBH | 4.816360 | 156.067032 | 64.483360 |
