Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0012520 | OGI:04063200 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:22004385-22011087 | ||||||||
| Gene Symbol | OsS1Fa1, - | ||||||||||
| DNA seq | aggaagtcggtggcatcaaatgcaaccaaaaacagaacagattcaaaggggtcatccaggcccaggagacagagagtttgcagaagaccactactactaaaaattgcagtttgaaagccttaaaaatacgaacagcacaatagatcaatttgggctaaggttcaaccgtttgctgaaataagttgtccaataacggagaatcactatataaagcttatacagaacatagtaactgtaagcactgcggttccagttgatatatatcctgttttctaacaagcgaagagggtcgtctgaatcaaatcagcaacatcataactggtggctctcttcactctcctggggcagagacaccttgcttcagtttttccctcttcatcttcttcttcgagactggcttctttttgcgaggaggaagcgtcttctgagcgtacacatagagagcgtagttcccgacaaagaaaagcagcaggaaggtcgcgaccacaatcaggactatcattccagggttcagtcccttgttgacctcctcaatgactacattgttctgaagaccagaaaacaaatctatcaagcactatgcatgacaaaagggcactgcaatttaaatgtatgtgacttctttatcgaaaaaatactatgaggcttgcagggttagaagaagttaacccttccataggagtatatgttacaagttactagacagatagagccagagcagagatatctgtggacatggatgagtctgcacatattgccatgtatagatctccatacacagataattcgaaagctagataacaattatttgtactgtatagtcacccacatctgtagttctgtacagtttgatcacagcacaaaataaagcttattactaaggattgcatgttttcaacactagcaactagcccatccaagagtggccaaaactaaatggaacatgatagataaagtgaagtggtctgcctagaattaccatttgcataagatacacaggattgctattaaacatatgcagtagacatatacaaggttggtagtaatcacatacaaggttgaacagagggaaatgggatggcagtgcataactgcatatatatattcattgaaaacagcagcaatctatgtcaacattcaatttcagcatatttacaggataaaaaatattcaaaatagtgaacaaacaatgtggacttgataactgaacaaaaaatgaactattggaatttggaaagcgcaaagttcgcgatataacttgattcaaaaattaatttaagtttaagaaactaaaagatcaagtgtacatcatggacatcatggtaagtaatactccctaatgaatgaccaccgaatgtatgaccatgcaaagactactgcaataatccgacagatctaaccctactcataaaaaaagcaacaagtgcgtgaatccattggcactaccatatcaacggaacaaaagaagtataagaagcccgtaagttccttaccgcagagtccgcgaactgatccgccatggctgaccgggaccaaacacctgcaactctggatccaacgatggatcaaactctggcgaaaaaagaaaaagaaaaagaggagcaattcttaatcgagaaggggttgtatcaatctccaccaaacctcaatccctacctctccttttttagatattttatttagcctacggcagctgctgcactattccgctgttcgtggccgatcgatcgtcgggtctcaccctcccgcttacgggattcggttaaggagttcgatgatctgataggattggaaggtgcgagtgaggaatactactgaaatttttgggggagttctgagagacggcaggacgaggattcgagcgaggaggaggggatcgaaggggaagacaacaatatatttgggcagatgaccccacccagcagatggtcagacggtgcatgtgtcaaaatgggacaaaataaacatgtcatcgccacctgctggataggataaggatatccttacaaagacatagtaggtacaatcctattattttcttttattcgaatcacttattattaaataaaaatttatttgtgtgtaaaatttttacatggtgtccttagccactcaaaagcaaatgacgtaaaataaactacggtgaaaaaccaaaaaatcaaattcaaaattaagttctagtaaaatttaatttttgacttataaacataagcataagccaaacaataagactatattagtaggaggggccgtagtattgctatggctacagctgcaactagataaggcatagactattgtcggcttgcaactatagtaggagcatctccaacagcctcttcaaataactcactaagctaaattttagccattccagtgaaaaaacaccctccaacagcctctccaacaggatggctaagccatctggctggccaaaaccctccccacactagccaaatttgactagtcaaaaatcactggccaactgtggaccccacgcgtattctcctcccatctcgttgccggccatagtccacagcgccgacgtcgtcgcatgcaaccgccgtcgcccgccgcggcctccgccgccgtccgcaccgtcgccggccgcggcctccgccgccatccatgccgttgccgcccgcgacctccgccgtcatccgcgccgtcgccggccgcgaccgccgccgtcgtccaccgcaaccgccgccgccgaccccacgcacaagctggagcacgagcagagctgcagaggattggagaaaggggaggaagaagaaagaggagaatgaaaggtgggcccattgattaatagagagtggaatgtggagagtctgttggaatagaagacaaatttgactctctaaatttttgttaggctggccaaattggtatttggagagtcaaaaatgaccactctgttggagatgctcttagggtgtgttcagcacccctttttcccagcccatgtctctcgtttttcacgcgcacgtttttcaaattattaaatggtgtattttttgtaaaaagtttctatacaaaagttgcttaaaaaatcatattaatctatttttgaaaaaagattagtaaatacttaattactcacatgctaatgaactgctccgttttccgtgttactgttccgggttgggaaccagtgtatacgaacacaccctaagagggcccaaaaaaaagaaaaactatagtaagagggacattttaacaatttgtcactcatagagtatgacttgtgggctcacatttgtcaataatatgtgggtctaataacataatcgttaaatgtaacacgtgaaagtggcaaatagtaaatatgtgatagtaaaagggcagcagagcaggcccattatcatatatgaaaccttctcattatcatatatgaagtagatttatcatatactccctccgtccctaaatataagggattgtgggtgaatgtaacatatcctaggctatgaatctggataaggagtatgtccagattcatactcctaggatacatcatatctatttataatcccttatattttagggcggagagagtaataaattagtagtagttggcactatgcataagaattaaagcaacaagtgaatgtattagcactatcatcagtataggtttttcactcttggaaatacatttcctctattttaaaatgaactaatttctatatctaaatttttaggcaagggttggtttattttggtacgaaagattgctatcatgtttggttgcttgatgcagagctgtgcggcagcaatggttgcttgaagcagttggctgcgacgcagccaatccaccaaacagccgaacaaggcctacgataatatacatatgccagaaaccgtcgttgtatcataatgttgcatcacatcattttgtttggctgtatgtatcatactctcttcgttaaaaaaaaattaatctaggatattttgagttttcttgggacggagttcataactgtatattgtatattttgatggttatatattgtgaattagacgtcatagttgcgcagaggatatgattgactacttgtgatcaagctggtgtggatacatgagatggtcaagactcttgtgatcaagctggtgtggatacatgagatggtcaagactagtgacagtagccgagccaaaacagatcaaagcatcatcaaggatccaagggcaaccgggaccctggagcatgaaatctgtctttgtgggtttgatgataggcgtgcagctcttttttttttccgcgaaagtacgaaagtacagctattacaatcaacataagcgcatggattatgtgcacacgtttcttttgaaatgaagatttaatcaatttgccatttattaggaatagttagcaataaaactgaaaaacgttcagatatgtatggcctgttcaggctcaatttaatttgggatgacgcaagcatcatcttgtgcaacaaacttgaaaatgcgaaggagggagcccaagctactatggcacgccggatgcatgtcagcaccaagccatcaaatacaacagaaaacagcatcaagttataaatcattcagatttcagattgcaagatggctacgcaggttgcagaaattttcaggcacgatcgccagctaaatcaaagagacacgcagaaacaaaccaaaagaagggctcaatttgcagtgctgttcaacagattgctcaaataaggcgtctaatacaaatgtaaaccacttaggacaaagcttctacataacatagttactgtaaacactgccgctccagctgataattcttatcatgcaaaagaagctcaggataaaatcagtaacattggtaaactgacgaatctcttcactctccgggtgcagaaaccccctgcttcagcttttccctcttcagcttcttcttggagactggcttcttcttccgaggaggaagcgtcttctgagcatacatgtagagcgcatagtttccaacaaagaaaagaatcaggagagttgcaaccacaagaaggactatcgttccagggttcaggcccttgttgacctcctcgatgatcatgttgttctgaagaacaaaaaaataaactatcagaaaccaccctaaagattgaaaatataattgcgatttaggtagctggaaaaatcaaaatagttaacccttcaaacttatatattacaaggttagtatgaacaaattagagcagacatgtacacccttttgtacacatgggaaacccaaaagctgacttcacagatcagcatgtctaagcatgtcaacagagcatgtcgacaaattatgttcaatatggactgttcagttccactacatatctgttaccctttattcatacagatttatcactgcgcagacgaagcttaattttaatacattattgagtctgacatttcatacatttacatgttttctacactagcaactagcctataagtaagattccaaaaactagtccgaggtcagccaaaacgaaatagaatgtgtgtaaaggtttgccattcagagaaagatatgacggttaactgatataaggatgaatacagaacaacaagacacaagtgttcagaacacctgaaagtgtttgaaagcaagaacatatacatttaaaagaggcaatcatgccaacatacagttccagtggattcacagaacataaattataaaacactccaaatgagagcacacaattgtgctcttaattatttattgaacagaactacactaatgaaaaggtagtcatgaatgccatgaggacaaagttaaattaagcaacgattaaacgatcatgtatgtatcataaataaaatagcaattcagcagaccggcaagagtaaaattatctagtgatgtcaattcttgaaacaagttatacacaaccagacacactaacctaatcaggtagcaatttaatcattcagctaggggatattttcctttttgagttggttcatgtggctcaactttggtttcatatctagtctaccagccaatttgcttcagattagaggctgatgatgataggacacagctaaaaaaacaaaaaactgaagaggaaacggaacaaccataaaatttaccgagatgtaacaaaatgtatgaccatgcaaaaactacagcgcaaattctacagatctaactatccacgccaggggactgatccaacttgggacatgggggttcagtttttggggggaacaaacaaattgttacttgtattagttaaggctctgaaattaagagaagagcttcttccagatctacaagagaagctagggtcaacacaagcaaattccagacaaaagcaaatccgccgtaaaaacgcgtcgagatccggtcaaacaaccgaaacgtcgaaggtttcgcacccctaaaaccaagagattaaacagaaacagctcgcagatccttaccgactgatccgccatggcagcgacgatacccgcagcaccagacgacaccagctgcggacctctgtggatcgaaaagaaaattagatcagcggctttagccaaagaagaatttctcggaggaagaagagaccccgtggaagtgagagatctccaccgtggattaagcccgccgtcctcacctctcgcttcttggcgcggatttctcacttctcttcctcccccccttggcgacaagctcgcgtgatctgctctgtcaccgcttgctgctcat
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| CDS seq | atgagcagcaagcgaggtccgcagctggtgtcgtctggtgctgcgggtatcgtcgctgccatggcggatcagtcgaacaacatgatcatcgaggaggtcaacaagggcctgaaccctggaacgatagtccttcttgtggttgcaactctcctgattcttttctttgttggaaactatgcgctctacatgtatgctcagaagacgcttcctcctcggaagaagaagccagtctccaagaagaagctgaagagggaaaagctgaagcagggggtttctgcacccggagaagtttga |
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| Protein seq | MSSKRGPQLVSSGAAGIVAAMADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGEV |
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| Function | DNA-binding protein S1FA1 [UniProtKB/Swiss-Prot:P42553] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.04 | Chr04 | 22004385 | 22006253 | - | NAM | ||
| CDS seq | atggcggatcagttcgcggactctgcgaacaatgtagtcattgaggaggtcaacaagggactgaaccctggaatgatagtcctgattgtggtcgcgaccttcctgctgcttttctttgtcgggaactacgctctctatgtgtacgctcagaagacgcttcctcctcgcaaaaagaagccagtctcgaagaagaagatgaagagggaaaaactgaagcaaggtgtctctgccccaggagagtga
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| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.05 | Chr04 | 22004464 | 22006253 | - | NAM | ||
| CDS seq | atggcggatcagttcgcggactctgcgaacaatgtagtcattgaggaggtcaacaagggactgaaccctggaatgatagtcctgattgtggtcgcgaccttcctgctgcttttctttgtcgggaactacgctctctatgtgtacgctcagaagacgcttcctcctcgcaaaaagaagccagtctcgaagaagaagatgaagagggaaaaactgaagcaaggtgtctctgccccaggagagtga
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| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.03 | Chr04 | 22004385 | 22006253 | - | NAM | ||
| CDS seq | atggcggatcagttcgcggactctgcgaacaatgtagtcattgaggaggtcaacaagggactgaaccctggaatgatagtcctgattgtggtcgcgaccttcctgctgcttttctttgtcgggaactacgctctctatgtgtacgctcagaagacgcttcctcctcgcaaaaagaagccagtctcgaagaagaagatgaagagggaaaaactgaagcaaggtgtctctgccccaggagagtga
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| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.01 | Chr04 | 22004464 | 22011087 | - | NAM | ||
| CDS seq | atgagcagcaagcgaggtccgcagctggtgtcgtctggtgctgcgggtatcgtcgctgccatggcggatcagtcgaacaacatgatcatcgaggaggtcaacaagggcctgaaccctggaacgatagtccttcttgtggttgcaactctcctgattcttttctttgttggaaactatgcgctctacatgtatgctcagaagacgcttcctcctcggaagaagaagccagtctccaagaagaagctgaagagggaaaagctgaagcagggggtttctgcacccggagaagtttga
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| Protein seq | MSSKRGPQLVSSGAAGIVAAMADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGEV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.02 | Chr04 | 22008881 | 22011087 | - | NAM | ||
| CDS seq | atgagcagcaagcgaggtccgcagctggtgtcgtctggtgctgcgggtatcgtcgctgccatggcggatcagtcgaacaacatgatcatcgaggaggtcaacaagggcctgaaccctggaacgatagtccttcttgtggttgcaactctcctgattcttttctttgttggaaactatgcgctctacatgtatgctcagaagacgcttcctcctcggaagaagaagccagtctccaagaagaagctgaagagggaaaagctgaagcagggggtttctgcacccggagagtga
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| Protein seq | MSSKRGPQLVSSGAAGIVAAMADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0012520 | OsLiXu_04g0012520.06 | Chr04 | 22004464 | 22006314 | - | IsoSeq | ||
| CDS seq | ccatctgctgggtggggtcatctgcccaaatatattgttgtcttccccttcgatcccctcctcctcgctcgaatcctcgtcctgccgtctctcagaactcccccaaaaatttcagtagtattcctcactcgcaccttccaatcctatcagatcatcgaactccttaaccgaatc |
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| Protein seq | PSAGWGHLPKYIVVFPFDPLLLARILVLPSLRTPPKISVVFLTRTFQSYQIIELLNRI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 22005924 | 22006041 | - | OsLiXu_04g0012520.03 | OsLiXu_04g0012520.03,OsLiXu_04g0012520.04 | All |
| A3 | Chr04 | 22005932 | 22006041 | - | OsLiXu_04g0012520.03 | OsLiXu_04g0012520.03,OsLiXu_04g0012520.06 | All |
| A3 | Chr04 | 22005924 | 22006041 | - | OsLiXu_04g0012520.06 | OsLiXu_04g0012520.06,OsLiXu_04g0012520.04 | All |
| RI | Chr04 | 22005878 | 22006253 | - | OsLiXu_04g0012520.05 | OsLiXu_04g0012520.05,OsLiXu_04g0012520.04 | All |
| RI | Chr04 | 22005878 | 22006253 | - | OsLiXu_04g0012520.05 | OsLiXu_04g0012520.03,OsLiXu_04g0012520.05 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.040506 | 8.355080 | 13.800089 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0408900 | RBH | 4.100325 | 6.737687 | 20.460737 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g33420 | RBH | 2.619889 | 4.622616 | 7.466525 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0408900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012350 | RBH | 2.092329 | 100.913033 | 30.746635 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013170 | RBH | 1.663235 | 25.212797 | 21.374359 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012880 | RBH | 11.276484 | 114.519402 | 83.443199 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012500 | RBH | 1.172246 | 4.197772 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012830 | RBH | 64.807030 | 113.732841 | 129.961197 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0318900 | RBH | 28.2292375 | 35.106577 | 46.755041 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011740 | RBH | 1.438176 | 13.881351 | 9.928241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0315900 | RBH | 16.94485 | 22.3743565 | 26.9082965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012320 | RBH | 1.207969 | 1.050883 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011940 | RBH | 6.247502 | 48.935226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011970 | RBH | 20.176132 | 207.476059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012750 | RBH | 2.058736 | 50.088398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011880 | RBH | 3.493813 | 37.833382 | 26.254240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011900 | RBH | 4.816360 | 156.067032 | 64.483360 |
