Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0348600 | OGI:04053170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:16602474-16605154 | ||||||||
| Gene Symbol | OsPRR12, Rra17, OsRRA17, OsEnS-61, OsPRR11 | ||||||||||
| DNA seq | CACCAAAAAATAGAACCATAGCAAGTAGAATCCATAGCTTTGAGAAACTCATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGGTAAGTTAGTTCAATTCCTGTATATAATCCATGTAAGGGAGACATTACAGTGGCGGATTTACCGCCCGCTCGGTGTTGTCACCAAAATCTCCAATGATTTTTTATGTTTTCGAATAATTTAATACAACTTTTCTTTAATCGGTTGATACTAAGTGTAGTTAGATTTGCTTGGGCTCTGAAAGTTATTTGGATATGTCTCAGGGAAACATACATATGAAAACATTTCTTCAGCTAAATTATTGGTACATGATTTGTCACTTCCAGATCATAAAGTGTCAACATCTGGAGTGACAAATCCTTGTTTTTTCATTTGGGGTACCAACAGTACTACTTTTGTGATATATTGATTTTGGCCTATATGTTACCATGTTACCGATCTCAGCTTTGAAGTATATGACATCAGAAAATGTTTCTATAAAGTCCTGAAAAGATACTGCATTCCAAATGGTTCTTAAAAGGTATTGTTGCTTTTCAGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCAGTAAGTAGGCTGATTCTGTTCTAATTCAACCCCATTATTTTTCTGTGATGCATCTGGAGAGACAAAATGATTTATTGGGAATTGGTTTTCGATAATCTTGCTTTATTTGTATCAGTGATGTCAGCTGAGACAACAATGTCCACAATGATGAGGTGTGTTAAACTCGGTGCACGTTTTCTAGTGAAGAAGCCTCTTAACGAAGAAACTGTAGGTAATCTGTGGCAGCATGTTGACCTGAAAGTTTTGAAGATGGAGAAGATCAGGGAATTACTGCAAGGTTGGAAATAGTTTTTGCAATAATTAATATTATTTTTAGTAGTTGGTATAATTAACCCCAATAATAATCCAGCCATCTATCTCACATTGTTTATTGAAGCTCGTGCTGCAGCTGGGTATAAATCAATATCCTGCTTTTCTTATGTCTCCTTCACATAAGCACAATTCTAACTTGACAATTTGTACAATACACTTATGTCACCTTATTGTACTCGCTCTTAGATATAAAATGACTTCATTAATTAGTATCCTGGTAGCAGATGACTGTTATGAGCAAGTATATTGAATGTCTTTCATTAGGATGATGCGTGCATTAGTTGGGGTATTCCTAATGCTATGCCTCACCTAGTATGCATGTGTAATATATAAAGTGACATTGCTTGTGAATTAATGAAGCAATAGATGACATGTGCAAAGTAAAAGAAAACAATAGAGTAGAGAGGAGTAATGGTCTTGAAAATTTTGCTATGAGTTAGACAAATAAAACCTATCCATTGAGATGCACATTTTGCTGACACAAATTTCTTGTTCTTTCCTGCTAGACTAGTTATAGACCCGTGTGTCGCAATGGTTCGGTTTCTTTAGTTTGGTGAAAGGATTTGATTGGTTTTTATACCATGGTTGATTGTTTTGAGACATCGGTTTTTACGGGAGGGTAACAGTATTTAGGAGAAAGTGGTGGAGGGCAACAAAAGGAGGACGACTCTCTCTTTTAATCAGTAGAGAAACAACTGTAACTTTACATTGGAAGTGTCCACATGGATCTAAAATAGGGCAAGTAATATAATAGAGTTACCGCTACTCAAGATAGATGTGCAAACAGAGAATGTGTAGCTATACTCATAAGCAAAACACTAGGAAGATACCTTTTCCACTGAAAGATATACTGACCAAAGCTTCAAGAAAGTGCCACTGTTGTTTCCATCTTCTATTTACAATGTGTCTCACAGCTAGTATCTTAGGTTGAATTTATCAAAACTATTTGATTGCTATATTTATGTGAAAGTTAGCTTGATTCAGCTTCATATGTTGTACAATGCAGATCCTGGACAAGAGACGGTGATAACTATTAGTTATGAAGAGCAATTCTCTGGAGAAACTGAAGCAGATGAAAATAATGAAGAGGAGGAAGTGAATTCCTTTGAAGCTAAGAAGGCTGATTCAGTTAAAGTTCAATCAGATGAGAAGGGACATGACAATGCTAAAATCTCTAACACTGCTGCTGCTGAAGGGTCTGATGAAAAAGTCTCTAGTGGTGATGGTCATGTAGTGCCTAAAGCGTATAATAATGTGAATGTTGAAGAGAGCATAGGTAGTAACAATACTTCAGGTGAACAAGTCTCCGACAAGATCAAGAGTGATGCAAGAGTTGGGGTGATCCTTGTGGACTACCCAGATTTTGAGGATGATGAGACCAAGAAACCCACAAGCACTTAGATATAATCCGGTCTCGACTCGACTCTGTGTAGAGATCGAGTGAGCTGAGAATGTGGGGGGAACAAGTGACTGAAAGAATGCACTACCATATATGTTTATGGTAGTGTTTGTATCTTACTTTCTGCAAAATAAGAAATGCACCATGTGCTGAATATCTGGAACTATTAGCATTCTG
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| CDS seq | ATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCAGTAAGTAG |
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| Protein seq | MAQRVGHSADGVFVMIVDEDKSHANFARGMLSSLNFHVIVYSSPVNALVFLENNAQDVAVVLAAVDMKQLSGFQFLEAARVKRQDLQVISK |
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| Function | Two-component response regulator ORR29 [UniProtKB/Swiss-Prot:B8ASH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0348600 | OsNip_04t0348600-01 | Chr04 | 16602478 | 16605137 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCAGTAAGTAG
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| Protein seq | MAQRVGHSADGVFVMIVDEDKSHANFARGMLSSLNFHVIVYSSPVNALVFLENNAQDVAVVLAAVDMKQLSGFQFLEAARVKRQDLQVISK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0348600 | OsNip_04t0348600-02 | Chr04 | 16602474 | 16605154 | + | IsoSeq | ||
| CDS seq | ATGAGAAGGGACATGACAATGCTAAAATCTCTAACACTGCTGCTGCTGAAGGGTCTGATGAAAAAGTCTCTAGTGGTGATGGTC |
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| Protein seq | MRRDMTMLKSLTLLLLKGLMKKSLVVMV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 16603111 | 16603543 | + | OsNip_04t0348600-01 | OsNip_04t0348600-02,OsNip_04t0348600-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 11.529750 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0348800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28120 | RBH | 0.0 | 0.0 | 2.511913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0348600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009670 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0264600 | RBH | 0 | 0 | 0.024578 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261100 | RBH | 0 | 0 | 0.3741065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008630 | RBH | 0.0 | 0.0 | 0.339413 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008680 | RBH | 0.0 | 0.0 | 0.0 |
