Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g28120 | OGI:04053170 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:16602471-16605138 | ||||||||
| Gene Symbol | OsPRR12, Rra17, OsRRA17, OsEnS-61 | ||||||||||
| DNA seq | TCACACCAAAAAATAGAACCATAGCAAGTAGAATCCATAGCTTTGAGAAACTCATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGGTAAGTTAGTTCAATTCCTGTATATAATCCATGTAAGGGAGACATTACAGTGGCGGATTTACCGCCCGCTCGGTGTTGTCACCAAAATCTCCAATGATTTTTTATGTTTTCGAATAATTTAATACAACTTTTCTTTAATCGGTTGATACTAAGTGTAGTTAGATTTGCTTGGGCTCTGAAAGTTATTTGGATATGTCTCAGGGAAACATACATATGAAAACATTTCTTCAGCTAAATTATTGGTACATGATTTGTCACTTCCAGATCATAAAGTGTCAACATCTGGAGTGACAAATCCTTGTTTTTTCATTTGGGGTACCAACAGTACTACTTTTGTGATATATTGATTTTGGCCTATATGTTACCATGTTACCGATCTCAGCTTTGAAGTATATGACATCAGAAAATGTTTCTATAAAGTCCTGAAAAGATACTGCATTCCAAATGGTTCTTAAAAGGTATTGTTGCTTTTCAGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCAGTAAGTAGGCTGATTCTGTTCTAATTCAACCCCATTATTTTTCTGTGATGCATCTGGAGAGACAAAATGATTTATTGGGAATTGGTTTTCGATAATCTTGCTTTATTTGTATCAGTGATGTCAGCTGAGACAACAATGTCCACAATGATGAGGTGTGTTAAACTCGGTGCACGTTTTCTAGTGAAGAAGCCTCTTAACGAAGAAACTGTAGGTAATCTGTGGCAGCATGTTGACCTGAAAGTTTTGAAGATGGAGAAGATCAGGGAATTACTGCAAGGTTGGAAATAGTTTTTGCAATAATTAATATTATTTTTAGTAGTTGGTATAATTAACCCCAATAATAATCCAGCCATCTATCTCACATTGTTTATTGAAGCTCGTGCTGCAGCTGGGTATAAATCAATATCCTGCTTTTCTTATGTCTCCTTCACATAAGCACAATTCTAACTTGACAATTTGTACAATACACTTATGTCACCTTATTGTACTCGCTCTTAGATATAAAATGACTTCATTAATTAGTATCCTGGTAGCAGATGACTGTTATGAGCAAGTATATTGAATGTCTTTCATTAGGATGATGCGTGCATTAGTTGGGGTATTCCTAATGCTATGCCTCACCTAGTATGCATGTGTAATATATAAAGTGACATTGCTTGTGAATTAATGAAGCAATAGATGACATGTGCAAAGTAAAAGAAAACAATAGAGTAGAGAGGAGTAATGGTCTTGAAAATTTTGCTATGAGTTAGACAAATAAAACCTATCCATTGAGATGCACATTTTGCTGACACAAATTTCTTGTTCTTTCCTGCTAGACTAGTTATAGACCCGTGTGTCGCAATGGTTCGGTTTCTTTAGTTTGGTGAAAGGATTTGATTGGTTTTTATACCATGGTTGATTGTTTTGAGACATCGGTTTTTACGGGAGGGTAACAGTATTTAGGAGAAAGTGGTGGAGGGCAACAAAAGGAGGACGACTCTCTCTTTTAATCAGTAGAGAAACAACTGTAACTTTACATTGGAAGTGTCCACATGGATCTAAAATAGGGCAAGTAATATAATAGAGTTACCGCTACTCAAGATAGATGTGCAAACAGAGAATGTGTAGCTATACTCATAAGCAAAACACTAGGAAGATACCTTTTCCACTGAAAGATATACTGACCAAAGCTTCAAGAAAGTGCCACTGTTGTTTCCATCTTCTATTTACAATGTGTCTCACAGCTAGTATCTTAGGTTGAATTTATCAAAACTATTTGATTGCTATATTTATGTGAAAGTTAGCTTGATTCAGCTTCATATGTTGTACAATGCAGATCCTGGACAAGAGACGGTGATAACTATTAGTTATGAAGAGCAATTCTCTGGAGAAACTGAAGCAGATGAAAATAATGAAGAGGAGGAAGTGAATTCCTTTGAAGCTAAGAAGGCTGATTCAGTTAAAGTTCAATCAGATGAGAAGGGACATGACAATGCTAAAATCTCTAACACTGCTGCTGCTGAAGGGTCTGATGAAAAAGTCTCTAGTGGTGATGGTCATGTAGTGCCTAAAGCGTATAATAATGTGAATGTTGAAGAGAGCATAGGTAGTAACAATACTTCAGGTGAACAAGTCTCCGACAAGATCAAGAGTGATGCAAGAGTTGGGGTGATCCTTGTGGACTACCCAGATTTTGAGGATGATGAGACCAAGAAACCCACAAGCACTTAGATATAATCCGGTCTCGACTCGACTCTGTGTAGAGATCGAGTGAGCTGAGAATGTGGGGGGAACAAGTGACTGAAAGAATGCACTACCATATATGTTTATGGTAGTGTTTGTATCTTACTTTCTGCAAAATAAGAAATGCACCATGTGCTGAATATCTGG
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| CDS seq | ATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCATGATGTCAGCTGAGACAACAATGTCCACAATGATGAGGTGTGTTAAACTCGGTGCACGTTTTCTAGTGAAGAAGCCTCTTAACGAAGAAACTGTAGGTAATCTGTGGCAGCATGTTGACCTGAAAGTTTTGAAGATGGAGAAGATCAGGGAATTACTGCAAGATGAAAATAATGAAGAGGAGGAAGTGAATTCCTTTGAAGCTAAGAAGGCTGATTCAGTTAAAGTTCAATCAGATGAGAAGGGACATGACAATGCTAAAATCTCTAACACTGCTGCTGCTGAAGGGTCTGATGAAAAAGTCTCTAGTGGTGATGGTCATGTAGTGCCTAAAGCGTATAATAATGTGAATGTTGAAGAGAGCATAGGTAGTAACAATACTTCAGGTGAACAAGTCTCCGACAAGATCAAGAGTGATGCAAGAGTTGGGGTGATCCTTGTGGACTACCCAGATTTTGAGGATGATGAGACCAAGAAACCCACAAGCACTTAG
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| Protein seq | MAQRVGHSADGVFVMIVDEDKSHANFARGMLSSLNFHVIVYSSPVNALVFLENNAQDVAVVLAAVDMKQLSGFQFLEAARVKRQDLQVIMMSAETTMSTMMRCVKLGARFLVKKPLNEETVGNLWQHVDLKVLKMEKIRELLQDENNEEEEVNSFEAKKADSVKVQSDEKGHDNAKISNTAAAEGSDEKVSSGDGHVVPKAYNNVNVEESIGSNNTSGEQVSDKIKSDARVGVILVDYPDFEDDETKKPTST |
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| Function | Two-component response regulator ORR29 [UniProtKB/Swiss-Prot:Q7XS69] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g28120 | LOC_Os04g28120.1 | Chr04 | 16602471 | 16605138 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTCAAAGGGTAGGACACTCTGCTGATGGGGTTTTTGTCATGATCGTTGATGAAGATAAGTCACATGCCAACTTCGCAAGAGGCATGCTCTCCAGCCTCAATTTTCATGTGATAGTGTACTCAAGTCCTGTGAATGCACTCGTTTTTCTGGAGAATAACGCACAAGACGTCGCTGTAGTCTTGGCAGCAGTGGACATGAAACAATTGAGTGGTTTTCAGTTCCTCGAAGCTGCAAGAGTGAAACGCCAGGACCTTCAAGTTATCATGATGTCAGCTGAGACAACAATGTCCACAATGATGAGGTGTGTTAAACTCGGTGCACGTTTTCTAGTGAAGAAGCCTCTTAACGAAGAAACTGTAGGTAATCTGTGGCAGCATGTTGACCTGAAAGTTTTGAAGATGGAGAAGATCAGGGAATTACTGCAAGATGAAAATAATGAAGAGGAGGAAGTGAATTCCTTTGAAGCTAAGAAGGCTGATTCAGTTAAAGTTCAATCAGATGAGAAGGGACATGACAATGCTAAAATCTCTAACACTGCTGCTGCTGAAGGGTCTGATGAAAAAGTCTCTAGTGGTGATGGTCATGTAGTGCCTAAAGCGTATAATAATGTGAATGTTGAAGAGAGCATAGGTAGTAACAATACTTCAGGTGAACAAGTCTCCGACAAGATCAAGAGTGATGCAAGAGTTGGGGTGATCCTTGTGGACTACCCAGATTTTGAGGATGATGAGACCAAGAAACCCACAAGCACTTAG
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| Protein seq | MAQRVGHSADGVFVMIVDEDKSHANFARGMLSSLNFHVIVYSSPVNALVFLENNAQDVAVVLAAVDMKQLSGFQFLEAARVKRQDLQVIMMSAETTMSTMMRCVKLGARFLVKKPLNEETVGNLWQHVDLKVLKMEKIRELLQDENNEEEEVNSFEAKKADSVKVQSDEKGHDNAKISNTAAAEGSDEKVSSGDGHVVPKAYNNVNVEESIGSNNTSGEQVSDKIKSDARVGVILVDYPDFEDDETKKPTST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.511913 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0348600 | RBH | 0.0 | 0.0 | 11.529750 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0348600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009670 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0264600 | RBH | 0 | 0 | 0.024578 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0261100 | RBH | 0 | 0 | 0.3741065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008630 | RBH | 0.0 | 0.0 | 0.339413 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008680 | RBH | 0.0 | 0.0 | 0.0 |
