Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0325300 | OGI:04047500 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:15067485-15069035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGATGTTCGCCATTTGTATATTAAGGCTTGTAATGGAGCAACAGTTGCTGGCAATAAAGCTTTCGAGAAAATGATTACCGAAAATATTGTCAAACTGAAGGAGCTGCGCACTCTGATCATTGACGGAGGGGAGACAGGAATTGAGGCAAAGGTGTTCGATGATATCTTCGACAGCTTGAAGTCTCTACGAGTACTGATTGTAGAGACACAGAGTAGAAGAATATTGCAAATCCCAGAATCTATTGGTTACTTAAAGTATCTACGATATCTTTCTATCGAGTATAGATGCCGTATATTTTTTCCGCGCACGGTTACAAAGCTTTACCACTTGCGGGTGCTTGATTTTGGTGAATATGGAATGTTGGAACGTAGTTGCTCCCCTGAAAATATGAGTAACCTTGTGAACTTGCAGAGAGTGGTAGGCCGTTCACTTGGGGATTTTCCAAACATAGGCAGGCTGACATTGCTCCGAACATTACCAACCTTCAGGGTGAAAAGGGACCTCCTGGGTTACGACATTAAGCAGCTGAAGCACCTAAACAAGCTCCAGGGAAAATTGGTGATCAGTGGTCTCCAACATGTTCGCAGCGAGGAGGAAGCCGTTGAAGCGAAGTTAGCTGAGAAGGAGCACCTCAAACAACTGACACTGGCCTGGGACGATGATAACACAAGCAGTAACCACGATCCAGCAGTACTCGAGTGTCTATGCCCGCCAATGGGGCTTCAAGTCCTGGAAATCATAGGCTACCGTGGTTCATACCCTGGCTGGATGGTGGGTAAGCATAGTGGTCAACTGTACCTTCAGAAACTTGAGCTCCGCCAATGCAGCCCACTGGGACCTGCTCCTAGACTTTTTGAGTGCTTCGTTCATCTGGAATCGCTCTGTCTCTCTCACTTAAGCTGGCACACCTTGCCAGATAACATGGAGCAAGTCAGGACTCTCAAAGTTCTGATGATCTCCCACTGCAAGAATATGAAGGTGCTGCCAACACTGCCGCAGTCTCTTTCGCGTTTTAAACTCTCAAACTGCGGGCACGAGTTCACAAGGTCTTGCAAACAGAATGGAGAAAATTGGGAAAAGATCCAGCACATTCTCGAAAAAATAATCCTATGATATCCATAGCTCTCAAGGTAAGACACTAATTAAGACTCGAAGTCCCTTTGCTGCCTTCTGCTCCCTGTAAATGAGACTCACTGCTAACTCTGGTCATGTTTGTTAATCAATTTGTCAAACTGATTCTGCAGACGAGGCATCATGGCGCAATGGCGTTGCATCAGCAGGGCTTTAGGCATCAATGGGAAGACGATGAAGGGAATGTTGAGCAAGGTGGCAGTTCAGACCTTAAGCCAAACTGCAGGCTGGGCCGGATGTATGTGTGTTATGATTCCTTGGTGTATTTTCATTCTGTCCTTTTTTTATCAAAAACTAGGAAGGTAGCCCGCGCCTTGCGCGGCCATGTATTTTAGATTGCGTTTGAAAAACTTATATAGGTGGAATATCAACCGGATGACACCTGCCATATTTTTCAAAAGTACTACTTCGAAAAACTT
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| CDS seq | GATGTTCGCCATTTGTATATTAAGGCTTGTAATGGAGCAACAGTTGCTGGCAATAAAGCTTTCGAGAAAATGATTACCGAAAATATTGTCAAACTGAAGGAGCTGCGCACTCTGATCATTGACGGAGGGGAGACAGGAATTGAGGCAAAGGTGTTCGATGATATCTTCGACAGCTTGAAGTCTCTACGAGTACTGATTGTAGAGACACAGAGTAGAAGAATATTGCAAATCCCAGAATCTATTGGTTACTTAAAGTATCTACGATATCTTTCTATCGAGTATAGATGCCGTATATTTTTTCCGCGCACGGTTACAAAGCTTTACCACTTGCGGGTGCTTGATTTTGGTGAATATGGAATGTTGGAACGTAGTTGCTCCCCTGAAAATATGAGTAACCTTGTGAACTTGCAGAGAGTGGTAGGCCGTTCACTTGGGGATTTTCCAAACATAGGCAGGCTGACATTGCTCCGAACATTACCAACCTTCAGGGTGAAAAGGGACCTCCTGGGTTACGACATTAAGCAGCTGAAGCACCTAAACAAGCTCCAGGGAAAATTGGTGATCAGTGGTCTCCAACATGTTCGCAGCGAGGAGGAAGCCGTTGAAGCGAAGTTAGCTGAGAAGGAGCACCTCAAACAACTGACACTGGCCTGGGACGATGATAACACAAGCAGTAACCACGATCCAGCAGTACTCGAGTGTCTATGCCCGCCAATGGGGCTTCAAGTCCTGGAAATCATAGGCTACCGTGGTTCATACCCTGGCTGGATGGTGGGTAAGCATAGTGGTCAACTGTACCTTCAGAAACTTGAGCTCCGCCAATGCAGCCCACTGGGACCTGCTCCTAGACTTTTTGAGTGCTTCGTTCATCTGGAATCGCTCTGTCTCTCTCACTTAAGCTGGCACACCTTGCCAGATAACATGGAGCAAGTCAGGACTCTCAAAGTTCTGATGATCTCCCACTGCAAGAATATGAAGGTGCTGCCAACACTGCCGCAGTCTCTTTCGCGTTTTAAACTCTCAAACTGCGGGCACGAGTTCACAAGGTCTTGCAAACAGAATGGAGAAAATTGGGAAAAGATCCAGCACATTCTCGAAAAAATAATCCTATGA
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| Protein seq | DVRHLYIKACNGATVAGNKAFEKMITENIVKLKELRTLIIDGGETGIEAKVFDDIFDSLKSLRVLIVETQSRRILQIPESIGYLKYLRYLSIEYRCRIFFPRTVTKLYHLRVLDFGEYGMLERSCSPENMSNLVNLQRVVGRSLGDFPNIGRLTLLRTLPTFRVKRDLLGYDIKQLKHLNKLQGKLVISGLQHVRSEEEAVEAKLAEKEHLKQLTLAWDDDNTSSNHDPAVLECLCPPMGLQVLEIIGYRGSYPGWMVGKHSGQLYLQKLELRQCSPLGPAPRLFECFVHLESLCLSHLSWHTLPDNMEQVRTLKVLMISHCKNMKVLPTLPQSLSRFKLSNCGHEFTRSCKQNGENWEKIQHILEKIIL |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0325300 | OsNip_04t0325300-01 | Chr04 | 15067485 | 15069035 | + | RAP2018-11-26 | ||
| CDS seq | GATGTTCGCCATTTGTATATTAAGGCTTGTAATGGAGCAACAGTTGCTGGCAATAAAGCTTTCGAGAAAATGATTACCGAAAATATTGTCAAACTGAAGGAGCTGCGCACTCTGATCATTGACGGAGGGGAGACAGGAATTGAGGCAAAGGTGTTCGATGATATCTTCGACAGCTTGAAGTCTCTACGAGTACTGATTGTAGAGACACAGAGTAGAAGAATATTGCAAATCCCAGAATCTATTGGTTACTTAAAGTATCTACGATATCTTTCTATCGAGTATAGATGCCGTATATTTTTTCCGCGCACGGTTACAAAGCTTTACCACTTGCGGGTGCTTGATTTTGGTGAATATGGAATGTTGGAACGTAGTTGCTCCCCTGAAAATATGAGTAACCTTGTGAACTTGCAGAGAGTGGTAGGCCGTTCACTTGGGGATTTTCCAAACATAGGCAGGCTGACATTGCTCCGAACATTACCAACCTTCAGGGTGAAAAGGGACCTCCTGGGTTACGACATTAAGCAGCTGAAGCACCTAAACAAGCTCCAGGGAAAATTGGTGATCAGTGGTCTCCAACATGTTCGCAGCGAGGAGGAAGCCGTTGAAGCGAAGTTAGCTGAGAAGGAGCACCTCAAACAACTGACACTGGCCTGGGACGATGATAACACAAGCAGTAACCACGATCCAGCAGTACTCGAGTGTCTATGCCCGCCAATGGGGCTTCAAGTCCTGGAAATCATAGGCTACCGTGGTTCATACCCTGGCTGGATGGTGGGTAAGCATAGTGGTCAACTGTACCTTCAGAAACTTGAGCTCCGCCAATGCAGCCCACTGGGACCTGCTCCTAGACTTTTTGAGTGCTTCGTTCATCTGGAATCGCTCTGTCTCTCTCACTTAAGCTGGCACACCTTGCCAGATAACATGGAGCAAGTCAGGACTCTCAAAGTTCTGATGATCTCCCACTGCAAGAATATGAAGGTGCTGCCAACACTGCCGCAGTCTCTTTCGCGTTTTAAACTCTCAAACTGCGGGCACGAGTTCACAAGGTCTTGCAAACAGAATGGAGAAAATTGGGAAAAGATCCAGCACATTCTCGAAAAAATAATCCTATGA
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| Protein seq | DVRHLYIKACNGATVAGNKAFEKMITENIVKLKELRTLIIDGGETGIEAKVFDDIFDSLKSLRVLIVETQSRRILQIPESIGYLKYLRYLSIEYRCRIFFPRTVTKLYHLRVLDFGEYGMLERSCSPENMSNLVNLQRVVGRSLGDFPNIGRLTLLRTLPTFRVKRDLLGYDIKQLKHLNKLQGKLVISGLQHVRSEEEAVEAKLAEKEHLKQLTLAWDDDNTSSNHDPAVLECLCPPMGLQVLEIIGYRGSYPGWMVGKHSGQLYLQKLELRQCSPLGPAPRLFECFVHLESLCLSHLSWHTLPDNMEQVRTLKVLMISHCKNMKVLPTLPQSLSRFKLSNCGHEFTRSCKQNGENWEKIQHILEKIIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25900 | RBH | 0.0 | 0.0 | 0.131367 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0325300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007640 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008280 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008360 | RBH | 0.0 | 4.233482 | 0.667009 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007730 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008430 | RBH | 0.0 | 1.818512 | 1.275135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0229800 | RBH | 0.1231015 | 3.3629675 | 0.4263225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0238800 | RBH | 0.085873 | 3.6333755 | 0.077885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008020 | RBH | 0.0 | 0.097886 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007700 | RBH | 0.0 | 4.539910 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008190 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008540 | RBH | 0.0 | 2.071673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007670 | RBH | 0.0 | 1.786869 | 0.590157 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007770 | RBH | 0.0 | 12.553306 | 0.551740 |
