Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0316200 | OGI:04047970 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:14453617-14454811 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGCTCCCACAACTACTGAATTTTATTTGTGAACCTCTACCTGAAGTTGGCGAAGAGCTGCATGTCGATTATTTTAGTTATTGAACCGTTGTAAATTTGGTTTTAACTGGATCGATGTCCAGATTTATTCACTAAAATTTCTCGGGTGAACGTGGACATTTTGTCGGAATGTCCTAATAATAGTATAGGTATACGTGTAGAGATTTGCTTGCACTTTGTCGGCCATAGGTAGGGTGCACCTCCACCATTTTGGTGCGTAGAACTGTAGGCTGTAGCTACCGCAGCTTCCATCGGGTGCCAATGGCGACGGCGCTGGCTAGACCTTGTCCGCCCGCAGCACCACCATGGGAGCTCCGGTGTAGAACGGGCCGACGCCCAGCTCAGACCTCAGGTAGCACCTCGCTCCGGCGACCCTCGCGCCCTCGCCGTTGAGCGGGAACACCTGCCACCACCGCGCCAAGACGCCGTCGAGGCACCTGCGGCACGACGCCGGCGGCAGGTCCGGCGAGCACTGCGCCATGGAGTAGATGTTGCGGAACCCCGGGTCGCGGGCGTCGTCCCCCACGCGCTGCCCCGTGGCGAACAGCCTCGCCGGGTTCTCCTCCACCGCGTACCGCACGGTGGCCGCGAGCAGCTCGGTCACCGCGCGGTCGTACGCCGCCACGACGCCGGCGCCTCCGGTGATGTTGGTGCCGCTGATGAGCAGCGTCTCGCCGCCGGCGTTGTCGGTGGCGGCGAGGAAGTCGCCCTTGTTGGAGAATCGGGCGTAGCACTGGTTGTACACGAGGGCCACGTCCTTGGCGCGGCCGTGGCGGCCGCCGCAGACGCGGCCGACGTCGGCGAGGACGCGGGTGCCGCAGTCGAAGCAGTCGGAGACGCTGAGGTCGCCGCGGCAGAGGAGGAGGCCGTAGACGGCGTCGGGCGCGCCGCCGCGGTTGCCCGTGGCGAAGAGCGCCGACGGCGAGGCGGCGGCGTCCGCGCGGAGCGCGGCGGCGAGGTCACGGAGGTTGGACTCGTAGGCGCTCCCGGCCTTGTACGTGCCGGCGCTGGTGTCGCACGTTGGCCACGGCTGGCCGGCGGCGAGCGGAGGAAGCAGCAGCGCGGCCGCCGCCGCCGCCGCGACGACGGCGACGGCGTGGATGAGCGTACAGCGCGGCTGCATATTGGCGCGGCGTCACTCAGTTTAAGTTGGGAT
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| CDS seq | ATGCAGCCGCGCTGTACGCTCATCCACGCCGTCGCCGTCGTCGCGGCGGCGGCGGCGGCCGCGCTGCTGCTTCCTCCGCTCGCCGCCGGCCAGCCGTGGCCAACGTGCGACACCAGCGCCGGCACGTACAAGGCCGGGAGCGCCTACGAGTCCAACCTCCGTGACCTCGCCGCCGCGCTCCGCGCGGACGCCGCCGCCTCGCCGTCGGCGCTCTTCGCCACGGGCAACCGCGGCGGCGCGCCCGACGCCGTCTACGGCCTCCTCCTCTGCCGCGGCGACCTCAGCGTCTCCGACTGCTTCGACTGCGGCACCCGCGCCCTCGTGTACAACCAGTGCTACGCCCGATTCTCCAACAAGGGCGACTTCCTCGCCGCCACCGACAACGCCGGCGGCGAGACGCTGCTCATCAGCGGCACCAACATCACCGGAGGCGCCGGCGTCGTGGCGGCGTACGACCGCGCGGTGACCGAGCTGCTCGCGGCCACCGTGCGGTACGCGGTGGAGGAGAACCCGGCGAGGCTGTTCGCCACGGGGCAGCGCGTGGGGGACGACGCCCGCGACCCGGGGTTCCGCAACATCTACTCCATGGCGCAGTGCTCGCCGGACCTGCCGCCGGCGTCGTGCCGCAGGTGCCTCGACGGCGTCTTGGCGCGGTGGTGGCAGGTGTTCCCGCTCAACGGCGAGGGCGCGAGGGTCGCCGGAGCGAGGTGCTACCTGAGGTCTGAGCTGGGCGTCGGCCCGTTCTACACCGGAGCTCCCATGGTGGTGCTGCGGGCGGACAAGGTCTAG
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| Protein seq | MQPRCTLIHAVAVVAAAAAAALLLPPLAAGQPWPTCDTSAGTYKAGSAYESNLRDLAAALRADAAASPSALFATGNRGGAPDAVYGLLLCRGDLSVSDCFDCGTRALVYNQCYARFSNKGDFLAATDNAGGETLLISGTNITGGAGVVAAYDRAVTELLAATVRYAVEENPARLFATGQRVGDDARDPGFRNIYSMAQCSPDLPPASCRRCLDGVLARWWQVFPLNGEGARVAGARCYLRSELGVGPFYTGAPMVVLRADKV |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0316200 | OsNip_04t0316200-01 | Chr04 | 14453617 | 14454811 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGCCGCGCTGTACGCTCATCCACGCCGTCGCCGTCGTCGCGGCGGCGGCGGCGGCCGCGCTGCTGCTTCCTCCGCTCGCCGCCGGCCAGCCGTGGCCAACGTGCGACACCAGCGCCGGCACGTACAAGGCCGGGAGCGCCTACGAGTCCAACCTCCGTGACCTCGCCGCCGCGCTCCGCGCGGACGCCGCCGCCTCGCCGTCGGCGCTCTTCGCCACGGGCAACCGCGGCGGCGCGCCCGACGCCGTCTACGGCCTCCTCCTCTGCCGCGGCGACCTCAGCGTCTCCGACTGCTTCGACTGCGGCACCCGCGCCCTCGTGTACAACCAGTGCTACGCCCGATTCTCCAACAAGGGCGACTTCCTCGCCGCCACCGACAACGCCGGCGGCGAGACGCTGCTCATCAGCGGCACCAACATCACCGGAGGCGCCGGCGTCGTGGCGGCGTACGACCGCGCGGTGACCGAGCTGCTCGCGGCCACCGTGCGGTACGCGGTGGAGGAGAACCCGGCGAGGCTGTTCGCCACGGGGCAGCGCGTGGGGGACGACGCCCGCGACCCGGGGTTCCGCAACATCTACTCCATGGCGCAGTGCTCGCCGGACCTGCCGCCGGCGTCGTGCCGCAGGTGCCTCGACGGCGTCTTGGCGCGGTGGTGGCAGGTGTTCCCGCTCAACGGCGAGGGCGCGAGGGTCGCCGGAGCGAGGTGCTACCTGAGGTCTGAGCTGGGCGTCGGCCCGTTCTACACCGGAGCTCCCATGGTGGTGCTGCGGGCGGACAAGGTCTAG
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| Protein seq | MQPRCTLIHAVAVVAAAAAAALLLPPLAAGQPWPTCDTSAGTYKAGSAYESNLRDLAAALRADAAASPSALFATGNRGGAPDAVYGLLLCRGDLSVSDCFDCGTRALVYNQCYARFSNKGDFLAATDNAGGETLLISGTNITGGAGVVAAYDRAVTELLAATVRYAVEENPARLFATGQRVGDDARDPGFRNIYSMAQCSPDLPPASCRRCLDGVLARWWQVFPLNGEGARVAGARCYLRSELGVGPFYTGAPMVVLRADKV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0316200 | OsNip_04t0316200-02 | Chr04 | 14453721 | 14454810 | - | IsoSeq | ||
| CDS seq | TCCCAACTTAAACTGAGTGACGCCGCGCCAATATGCAGCCGCGCTGTACGCTCATCCACGCCGTCGCCGTCGTCGCGGCGGCGGCGGCGGCCGCGCTGCTGCTTCCTCCGCTCGCCGCCGGCCAGCCGTGGCCAACGTGCGACACCAGCGCCGGCACGTACAAGGCCGGGAGCGCCTACGAGTCCAACCTCCGTGACCTCGCCGCCGCGCTCCGCGCGGACGCCGCCGCCTCGCCGTCGGCGCTCTTCGCCACGGGCAACCGCGGCGGCGCGCCCGACGCCGTCTACGGCCTCCTCCTCTGCCGCGGCGACCTCAGCGTCTCCGACTGCTTCGACTGCGGCACCCGCGTCCTCGCCGACGTCGGCCGCGTCTGCGGCGGCCGCCACGGCCGCGCCAAGGACGTGGCCCTCGTGTACAACCAGTGCTACGCCCGATTCTCCAACAAGGGCGACTTCCTCGCCGCCACCGACAACGCCGGCGGCGAGACGCTGCTCATCAGCGGCACCAACATCACCGGAGGCGCCGGCGTCGTGGCGGCGTACGACCGCG
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| Protein seq | SQLKLSDAAPICSRAVRSSTPSPSSRRRRRPRCCFLRSPPASRGQRATPAPARTRPGAPTSPTSVTSPPRSARTPPPRRRRSSPRATAAARPTPSTASSSAAATSASPTASTAAPASSPTSAASAAAATAAPRTWPSCTTSATPDSPTRATSSPPPTTPAARRCSSAAPTSPEAPASWRRTTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.229702 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0322100 | RBH | 0.222353 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25060 | SBH | 0.0 | 0.125110 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0316200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008070 | SBH | 0.147080 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008710 | SBH | 0.0 | 0.0 | 0.268327 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008140 | SBH | 0.0 | 4.027286 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007810 | SBH | 0.0 | 0.075727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008330 | SBH | 0.848148 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0232400 | SBH | 0.6302115 | 38.927025 | 0.406406 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007680 | SBH | 0.075567 | 0.259124 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0236500 | SBH | 0.711729 | 73.72081 | 0.0684865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007550 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007780 | SBH | 0.0 | 4.375023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007840 | SBH | 1.912120 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008080 | SBH | 0.0 | 0.061669 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008110 | SBH | 0.0 | 0.562771 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007730 | SBH | 0.0 | 0.718440 | 0.208800 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007820 | SBH | 0.0 | 18.876749 | 0.0 |
