Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0007820 | OGI:04048130 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:14484931-14486390 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATAAaaacatctcggtttttgcttaatgagctatatccaattattacagaattcacgcaaaaacaatctcacacagtgagtttagaagcgcaccaacaaaatattaagtaagcacaaactaatacacaccaacacaagataaagctcccacaactactgaaTtttatttgtgaacctctacctgaagttggcgaagagctgcatgtcgattaatttagttattgaaccgttgtaaatttggttttaactggatcgatgtccagatttattcactaaaatttctcgggtgaacgtggacattttgtcggaatgtcctaataatagtataggtatacgtgtagagatttgcttgcactttgtcggccataggtagggtgcacctccaccaTtttggtgcgtagaactgtaggctgtagctaccgcagcttccatcgggtgccaatggcgacgacgctggctagaccttgtccgcccgcagcaccaccatgggagctccggtgtagaacgggccgacgcccagctcagacctcaggtagcacctcgcgccggcgaccctcgcgccctcgccgttgagcgggaacacctgccaccaccgcgccaagacgccgtcgaggcacctgcggcacgacgccggcggcaggtccggcgagcactgcgccatggagtagatgttgcggaaCcccaggtcgcgggcgtcgtcccccacgcgctgccccgtggcgaacagcctcgccgggttctcctccaccgcgtaccgcacggtggccgcgagcagctcggtcaccgcgcggtcgaacgccgccacgacgccggcgcctccggtgatgttggtgccgctgatgagcagcgtctcgccgccggcgttgtcggtggcggcgaggaagTCgcccttgttggagaatcgggcgtagcactggttgtacacgagggccacgtccttggcgcGgccgtggcggccgccgcagacgcggccgacgtcggcgaggacgcgggtgccgcagtcgaagcagtcggagacgctgaggtcgccgcggcagaggaggAggccgtagacgcgcggccgtggcgcgccgccgcagcggcgggcgagcgcgtcggcgaggacggccggcgcccgaagcgcggagcgcggcgacgctgaggtcgccgcggcaGcggaggaggaggccgtagacggcgtcgggcgcgccgccgcggttgcccgtggcgaagagcgccgACcgcgaggCggcggcgcccgcgcggagcgcggcggcgaggtcAcggaggttGgactcgtaggcgctcccggccttgtacgtgccggcgctggtgtcgcacgtcggccacggctggccggcGgcgagcggagGAagcagcagcgcggccgccgccgccGccgcgacgacggcgacggcgtggatgagcgTacagcgcggctgcatattggcgcGgcgtcactcagtttaagttgggatc
More
|
||||||||||
| CDS seq | atgcagccgcgctgtAcgctcatccacgccgtcgccgtcgtcgcggCggcggcggcggccgcgctgctgctTCctccgctcgcCgccggccagccgtggccgacgtgcgacaccagcgccggcacgtacaaggccgggagcgcctacgagtcCaacctcccgtcgccgcgctccgcgcttcgggcgccggccgtcctcgccgacgcgctcgcccgccgctgcggcggcgcgccacggccgcgcgtctacggccTcctcctctgccgcggcgacctcagcgtctccgactgcttcgactgcggcacccgcgtcctcgccgacgtcggccgcgtctgcggcggccgccacggcCgcgccaaggacgtggccctcgtgtacaaccagtgctacgcccgattctccaacaagggcGActtcctcgccgccaccgacaacgccggcggcgagacgctgctcatcagcggcaccaacatcaccggaggcgccggcgtcgtggcggcgttcgaccgcgcggtgaccgagctgctcgcggccaccgtgcggtacgcggtggaggagaacccggcgaggctgttcgccacggggcagcgcgtgggggacgacgcccgcgacctgggGttccgcaacatctactccatggcgcagtgctcgccggacctgccgccggcgtcgtgccgcaggtgcctcgacggcgtcttggcgcggtggtggcaggtgttcccgctcaacggcgagggcgcgagggtcgccggcgcgaggtgctacctgaggtctgagctgggcgtcggcccgttctacaccggagctcccatggtggtgctgcgggcggacaaggtctag
More
|
||||||||||
| Protein seq | MQPRCTLIHAVAVVAAAAAAALLLPPLAAGQPWPTCDTSAGTYKAGSAYESNLPSPRSALRAPAVLADALARRCGGAPRPRVYGLLLCRGDLSVSDCFDCGTRVLADVGRVCGGRHGRAKDVALVYNQCYARFSNKGDFLAATDNAGGETLLISGTNITGGAGVVAAFDRAVTELLAATVRYAVEENPARLFATGQRVGDDARDLGFRNIYSMAQCSPDLPPASCRRCLDGVLARWWQVFPLNGEGARVAGARCYLRSELGVGPFYTGAPMVVLRADKV |
||||||||||
| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0007820 | OsNaBo_04g0007820.01 | Chr04 | 14485390 | 14486356 | - | NAM | ||
| CDS seq | atgcagccgcgctgtAcgctcatccacgccgtcgccgtcgtcgcggCggcggcggcggccgcgctgctgctTCctccgctcgcCgccggccagccgtggccgacgtgcgacaccagcgccggcacgtacaaggccgggagcgcctacgagtcCaacctcccgtcgccgcgctccgcgcttcgggcgccggccgtcctcgccgacgcgctcgcccgccgctgcggcggcgcgccacggccgcgcgtctacggccTcctcctctgccgcggcgacctcagcgtctccgactgcttcgactgcggcacccgcgtcctcgccgacgtcggccgcgtctgcggcggccgccacggcCgcgccaaggacgtggccctcgtgtacaaccagtgctacgcccgattctccaacaagggcGActtcctcgccgccaccgacaacgccggcggcgagacgctgctcatcagcggcaccaacatcaccggaggcgccggcgtcgtggcggcgttcgaccgcgcggtgaccgagctgctcgcggccaccgtgcggtacgcggtggaggagaacccggcgaggctgttcgccacggggcagcgcgtgggggacgacgcccgcgacctgggGttccgcaacatctactccatggcgcagtgctcgccggacctgccgccggcgtcgtgccgcaggtgcctcgacggcgtcttggcgcggtggtggcaggtgttcccgctcaacggcgagggcgcgagggtcgccggcgcgaggtgctacctgaggtctgagctgggcgtcggcccgttctacaccggagctcccatggtggtgctgcgggcggacaaggtctag
More
|
|||||||
| Protein seq | MQPRCTLIHAVAVVAAAAAAALLLPPLAAGQPWPTCDTSAGTYKAGSAYESNLPSPRSALRAPAVLADALARRCGGAPRPRVYGLLLCRGDLSVSDCFDCGTRVLADVGRVCGGRHGRAKDVALVYNQCYARFSNKGDFLAATDNAGGETLLISGTNITGGAGVVAAFDRAVTELLAATVRYAVEENPARLFATGQRVGDDARDLGFRNIYSMAQCSPDLPPASCRRCLDGVLARWWQVFPLNGEGARVAGARCYLRSELGVGPFYTGAPMVVLRADKV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0007820 | OsNaBo_04g0007820.02 | Chr04 | 14484931 | 14486390 | - | IsoSeq | ||
| CDS seq | tcccaacttaaactgagtgacgcCgcgccaatatgcagccgcgctgtAcgctcatccacgccgtcgccgtcgtcgcggCggcggcggcggccgcgctgctgctTCctccgctcgcCgccggccagccgtggccgacgtgcgacaccagcgccggcacgtacaaggccgggagcgcctacgagtcCaacctccgTgacctcgccgccgcgctccgcgcgggcgccgccGcctcgcgGTcggcgctcttcgccacgggcaaccgcggcggcgcgcccgacgccgtctacggccTcctcctctgccgcggcgacctcagcgtctccgactgcttcgactgcggcacccgcgtcctcgccgacgtcggccgcgtctgcggcggccgccacggcCgcgccaaggacgtggccctcgtgtacaaccagtgctacgcccgattctccaacaagggcGActtcctcgccgccaccgacaacgccggcggcgagacgctgctcatcagcggcaccaacatcaccggaggcgccggcgtcgtggcggcgttcgaccgcg
More
|
|||||||
| Protein seq | SQLKLSDAAPICSRAVRSSTPSPSSRRRRRPRCCFLRSPPASRGRRATPAPARTRPGAPTSPTSVTSPPRSARAPPPRGRRSSPRATAAARPTPSTASSSAAATSASPTASTAAPASSPTSAASAAAATAAPRTWPSCTTSATPDSPTRATSSPPPTTPAARRCSSAAPTSPEAPASWRRSTA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 18.876749 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0322100 | RBH | 0.222353 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25650 | RBH | 0.120074 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0322100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008070 | RBH | 0.147080 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008710 | RBH | 0.0 | 0.0 | 0.268327 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008180 | RBH | 0.0 | 0.024312 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008330 | RBH | 0.848148 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0232400 | RBH | 0.6302115 | 38.927025 | 0.406406 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007680 | RBH | 0.075567 | 0.259124 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0231600 | RBH | 0.821472 | 94.3338395 | 0.1342215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007780 | RBH | 0.0 | 4.375023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007840 | RBH | 1.912120 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007750 | RBH | 0.0 | 0.191847 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008110 | RBH | 0.0 | 0.562771 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007730 | RBH | 0.0 | 0.718440 | 0.208800 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018080 | SBH | 0.086080 | 8.247792 | 0.0 |
