Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0226600 | OGI:04027370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:8472839-8476142 | ||||||||
| Gene Symbol | RLCK138, OsRLCK138, SDK5 | ||||||||||
| DNA seq | CCAGTAGAACCTTTTTAAATCAAACAATGTAATGGTATTGTTCAATTGGAATAACAGTTTTAAAAAATTGGGATCTGTACAGCGGAATTAACCATTTAACGCCCATCTTCTGCTGTTTTACTCATGTGGTTCAGAGATCTTGATCTCATGCTATCTCTCGTGTCTTCGTCTGTCCCGTACTCCCTCCTTGTGAAATATATAGGCTCCTTTGGAGCAGGAAGCACGGCAGTTTCGTTCTCCAGCATGAACACAATGGATGACATCAGTGGCCTAGCACTTGGTTGATCTTGAATGCAAAGGAGTCCTAAATGTATACATCGTAGAACTTCATGAAGTGGACAGCTCTCCACAATGGATGAGTCTACGAAATCCCTTGCATTTCCATCTTTCCATAAACTCCATGCCTGAAGAAACAAATCAAGTTATGATATCTCAACTCATTACATTTAGTTTGACTTGCAGAAATTTGAGCGTTGTGCTATACTTACATAGGCTATAAGGTTTGAACAGTCCACTTTGAGATGGGCTGAACTGATCTTTAAGCCACTCACAACTTCCAACAGTATGACACCAAAACTATAGGTGTCAGACTTGACGGAAAAATAGCCATCCAAAGCATATTCAGGAGACATGTAACCACTGTTTAAATAATTCAGGAAACAATATGCAGTTTGAATTAGGGTAAATAGTTTGCACGTTGAACATTAGCTAATATATGAAGTATGAACTGCTTACTATGTGCCGACAACCCTGGTGGTATTAGCTTGTTGCTCATTTCCACCAAAGATCCTTGCCATGCCGAAATCTGATATTTTAGGACTCATTTCTGTGTCCAACAAAATGTTGCTTGTCTTTAGATCTCTATGGATTATTGTTAATCTTGAATCCTGGTGAAGATAAAGAAGACCTCTTGCTACTCCTTTAATTATCTTGAACCTTGTCGGCCAGTCAAGCGTGTTTTTTCTGTTAGCATCTTCCAAGATCAATGTGGAATGAAATTTATTGTCAGACATCATCAATATCCCTTCAGTTTATTGTCAGAGATCATAAGTCAGAAATAACGTACCAAAAAGGAAGGCATCCAAGCTTCTGTTTGGTAAGTATTCGTAGATGAGTAACTTTTCGTCTTCATGAATGCAGCAACCAAGAAGCCTAACCAAGTTTCTGTGTTGTAATTTAGCAATCAGAACCACTTCATTTCTGAACTCCTCAACACCTTGCCCTGAACCCTTGCTAAGCCTCTTGACAGCAACTTCTATGCCACCCTCCAAAACTCCCTAAATATATATTGCACCATTCTTTGATTAAACAAGAGATAAGCTATAACATATCATATATCTTTAACTAAAAAATCAAGCTAAGACTTATCATTATTACCTTGTAAACTTTTCCAAAACCTCCTTTTCCAAGCAAGTTGTAATCGGAGAAATTGTTTGTTGCAGTGAGGACAGAATCCAAGTCAACAGAAGAAAGTTCTACATTTTCGCTCCCAACTTCGTTTGAATCATTCATGTGTTGAAATGGATATTTGCTCTGAACTTTCTTGCTTGGTTGATTGCCTGAAAGGAACGCTTCTGTATCATCATTATTGTTTCATACAAGTGAAATATCTCATCAAAGAGCAAAGTAATGTTTTTTACACTCTACCTCTTGATTTGCGTACAAGACATATGCCTCCAAGTATCAGCAGAAGACCAGCCGCAACCGGCAGTACAATCTTCAGAACAGTACTTTTCGTCTTGTTATTAGCTGCAGAAATCATTAATCACATTACATATCAAGCGAATTAATCATATTATTATACAGTCCAGAATAAAGAAAATATCCAAGAAATCATTTCTACTACCAGTAGAGAACACCATAAAGGTTATCGAAATACATGCCTCGTGAGCCAGGAATCCGGAGGTAGAGGTTCTCGCCGCCGGCACCATCGCTGAACTTGCCCGTGTCGACGAGCTCCCCCATCCAAACCAAGCACCTGGACCGGTCCTCCGTCGCATCGGCATTATTCAGGATTGCATAAGCATAAGCCGTGCAGGAGCAGTTGCGGCTGCACTCTGCGGTGCACTGATCGAAGCTTCTGTTCCTCACGTACAAGAACTTGTCCGGTGTCCTCATGCTCGGCATGGTCAAGAAGCCATCGCCGCCGCCGCCTGCCGACGCATCCCACCTCCTCCTCCTTCCTCCGGCAACCTCTCGAGACGTCGTGGCTGCTGTCGACGGGGACGAAGCCGTCGAGGCACTTGCACGTCGGAGTCGCCGTGGCGCCGATGCCGTCGCAGTAGCCGAAGGGCCCGCACGAGGCGTACTTGTCACAGCCGGTGGGGAACCGGGAGAAGACGGTCCACGACGACGTGTTGCCGTCCCAGCTCTGGAAGGTGAGCTCGCCGGTGTAGTCCAGCGTCATGCGCATCGGCGGCGAGCCGTCGGCGACGGTCAGCTTGAAGGAGTAGCCGTCGGCCATGTCGCCGTCGATCGTCTGATACAGCTTGAAGCTGGTGTTGGTCTGGATCACGCCGAAGATGGACGCGCCGGTCCACGCCGCTCGTCGCCAGTACGGCCTCGTCCCGTTCCAGACGACGATCTGGAGGTCCGAGCTGGAGTCGCCGCCCATGGTGAAGTCGCCGGCGGACGGGTCGTTGGGCCCCCTCCACGCGACGATGCGGTCTAAGCTGTTGGCCATGTAGCTCAGCGAGAAACTCACGTTGGGCACGATGGTGTCCGTCGGGTGATCGAAGCTCCGCCATACCTCAGACCCGTTCGGCAGCCGCACGACGAAGTTGCCGGAGTCGAGCAGCACAGCCGTCGCTCCAGCACCACCACCGGCGGCGGCGACGTTGTTCGAATTCGCCGTCGTCCAGACGGCGCCGCCGCCGCCGCCACCATTGGAGTCGGACAGCACGAGGTCGGAATCGTTGGTCAAGACCAGCTTCACGGAGGAGCTCTTCTTGATCGGGGTGTTGCGGTTGGCGACCCACACGTAGGTGTGCACGGGGATCTGGTTGTACCATACGCCGACGTACAAGTCCGAGGTTGAGTTCGTCAGGGAGAAGAAGCCGAGAGCGAAGACGCCGCCACTGGAGATGAGCTCGTCGCCGGGGGAGAGCGGCCTTGCAGGTGTAAGCTTGTCATCAGCTCTGCATGACGAACAAACAAGAAGCAGGAACACAAACACTGCAAGGTAAGCCGCCATGGCCGTTATAGAGGAATTCGATTCGTGTCACCATATACATGTCAATTTGTGGCGATCGCAGCGAGAAGATAGCAAAAATGTGGATTAGGATGTTCCACGGATTGCACAAAT
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| CDS seq | TCCTCTATAACGGCCATGGCGGCTTACCTTGCAGTGTTTGTGTTCCTGCTTCTTGTTTGTTCGTCATGCAGAGCTGATGACAAGCTTACACCTGCAAGGCCGCTCTCCCCCGGCGACGAGCTCATCTCCAGTGGCGGCGTCTTCGCTCTCGGCTTCTTCTCCCTGACGAACTCAACCTCGGACTTGTACGTCGGCGTATGGTACAACCAGATCCCCGTGCACACCTACGTGTGGGTCGCCAACCGCAACACCCCGATCAAGAAGAGCTCCTCCGTGAAGCTGGTCTTGACCAACGATTCCGACCTCGTGCTGTCCGACTCCAATGGTGGCGGCGGCGGCGGCGCCGTCTGGACGACGGCGAATTCGAACAACGTCGCCGCCGCCGGTGGTGGTGCTGGAGCGACGGCTGTGCTGCTCGACTCCGGCAACTTCGTCGTGCGGCTGCCGAACGGGTCTGAGGTATGGCGGAGCTTCGATCACCCGACGGACACCATCGTGCCCAACGTGAGTTTCTCGCTGAGCTACATGGCCAACAGCTTAGACCGCATCGTCGCGTGGAGGGGGCCCAACGACCCGTCCGCCGGCGACTTCACCATGGGCGGCGACTCCAGCTCGGACCTCCAGATCGTCGTCTGGAACGGGACGAGGCCGTACTGGCGACGAGCGGCGTGGACCGGCGCGTCCATCTTCGGCGTGATCCAGACCAACACCAGCTTCAAGCTGTATCAGACGATCGACGGCGACATGGCCGACGGCTACTCCTTCAAGCTGACCGTCGCCGACGGCTCGCCGCCGATGCGCATGACGCTGGACTACACCGGCGAGCTCACCTTCCAGAGCTGGGACGGCAACACGTCGTCGTGGACCGTCTTCTCCCGGTTCCCCACCGGCTGTGACAAGTACGCCTCGTGCGGGCCCTTCGGCTACTGCGACGGCATCGGCGCCACGGCGACTCCGACGTGCAAGTGCCTCGACGGCTTCGTCCCCGTCGACAGCAGCCACGACGTCTCGAGAGGTTGCCGGAGGAAGGAGGAGGAGGTGGGATGCGTCGGCAGGCGGCGGCGGCGATGGCTTCTTGACCATGCCGAGCATGAGGACACCGGACAAGTTCTTGTACGTGAGGAACAGAAGCTTCGATCAGTGCACCGCAGAGTGCAGCCGCAACTGCTCCTGCACGGCTTATGCTTATGCAATCCT
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| Protein seq | SSITAMAAYLAVFVFLLLVCSSCRADDKLTPARPLSPGDELISSGGVFALGFFSLTNSTSDLYVGVWYNQIPVHTYVWVANRNTPIKKSSSVKLVLTNDSDLVLSDSNGGGGGGAVWTTANSNNVAAAGGGAGATAVLLDSGNFVVRLPNGSEVWRSFDHPTDTIVPNVSFSLSYMANSLDRIVAWRGPNDPSAGDFTMGGDSSSDLQIVVWNGTRPYWRRAAWTGASIFGVIQTNTSFKLYQTIDGDMADGYSFKLTVADGSPPMRMTLDYTGELTFQSWDGNTSSWTVFSRFPTGCDKYASCGPFGYCDGIGATATPTCKCLDGFVPVDSSHDVSRGCRRKEEEVGCVGRRRRRWLLDHAEHEDTGQVLVREEQKLRSVHRRVQPQLLLHGLCLCNP |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 [UniProtKB/Swiss-Prot:Q9SXB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0226600 | OsNip_04t0226600-01 | Chr04 | 8472839 | 8476142 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCTTACCTTGCAGTGTTTGTGTTCCTGCTTCTTGTTTGTTCGTCATGCAGAGCTGATGACAAGCTTACACCTGCAAGGCCGCTCTCCCCCGGCGACGAGCTCATCTCCAGTGGCGGCGTCTTCGCTCTCGGCTTCTTCTCCCTGACGAACTCAACCTCGGACTTGTACGTCGGCGTATGGTACAACCAGATCCCCGTGCACACCTACGTGTGGGTCGCCAACCGCAACACCCCGATCAAGAAGAGCTCCTCCGTGAAGCTGGTCTTGACCAACGATTCCGACCTCGTGCTGTCCGACTCCAATGGTGGCGGCGGCGGCGGCGCCGTCTGGACGACGGCGAATTCGAACAACGTCGCCGCCGCCGGTGGTGGTGCTGGAGCGACGGCTGTGCTGCTCGACTCCGGCAACTTCGTCGTGCGGCTGCCGAACGGGTCTGAGGTATGGCGGAGCTTCGATCACCCGACGGACACCATCGTGCCCAACGTGAGTTTCTCGCTGAGCTACATGGCCAACAGCTTAGACCGCATCGTCGCGTGGAGGGGGCCCAACGACCCGTCCGCCGGCGACTTCACCATGGGCGGCGACTCCAGCTCGGACCTCCAGATCGTCGTCTGGAACGGGACGAGGCCGTACTGGCGACGAGCGGCGTGGACCGGCGCGTCCATCTTCGGCGTGATCCAGACCAACACCAGCTTCAAGCTGTATCAGACGATCGACGGCGACATGGCCGACGGCTACTCCTTCAAGCTGACCGTCGCCGACGGCTCGCCGCCGATGCGCATGACGCTGGACTACACCGGCGAGCTCACCTTCCAGAGCTGGGACGGCAACACGTCGTCGTGGACCGTCTTCTCCCGGTTCCCCACCGGCTGTGACAAGTACGCCTCGTGCGGGCCCTTCGGCTACTGCGACGGCATCGGCGCCACGGCGACTCCGACGTGCAAGTGCCTCGACGGCTTCGTCCCCGTCGACAGCAGCCACGACGTCTCGAGAGGTTGCCGGAGGAAGGAGGAGGAGGTGGGATGCGTCGGCAGGCGGCGGCGGCGATGGCTTCTTGACCATGCCGAGCATGAGGACACCGGACAAGTTCTTGTACGTGAGGAACAGAAGCTTCGATCAGTGCACCGCAGAGTGCAGCCGCAACTGCTCCTGCACGGCTTATGCTTATGCAATCCTGAATAA
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| Protein seq | MAAYLAVFVFLLLVCSSCRADDKLTPARPLSPGDELISSGGVFALGFFSLTNSTSDLYVGVWYNQIPVHTYVWVANRNTPIKKSSSVKLVLTNDSDLVLSDSNGGGGGGAVWTTANSNNVAAAGGGAGATAVLLDSGNFVVRLPNGSEVWRSFDHPTDTIVPNVSFSLSYMANSLDRIVAWRGPNDPSAGDFTMGGDSSSDLQIVVWNGTRPYWRRAAWTGASIFGVIQTNTSFKLYQTIDGDMADGYSFKLTVADGSPPMRMTLDYTGELTFQSWDGNTSSWTVFSRFPTGCDKYASCGPFGYCDGIGATATPTCKCLDGFVPVDSSHDVSRGCRRKEEEVGCVGRRRRRWLLDHAEHEDTGQVLVREEQKLRSVHRRVQPQLLLHGLCLCNPE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0226600 | OsNip_04t0226600-02 | Chr04 | 8472855 | 8476048 | - | IsoSeq | ||
| CDS seq | TCCTCTATAACGGCCATGGCGGCTTACCTTGCAGTGTTTGTGTTCCTGCTTCTTGTTTGTTCGTCATGCAGAGCTGATGACAAGCTTACACCTGCAAGGCCGCTCTCCCCCGGCGACGAGCTCATCTCCAGTGGCGGCGTCTTCGCTCTCGGCTTCTTCTCCCTGACGAACTCAACCTCGGACTTGTACGTCGGCGTATGGTACAACCAGATCCCCGTGCACACCTACGTGTGGGTCGCCAACCGCAACACCCCGATCAAGAAGAGCTCCTCCGTGAAGCTGGTCTTGACCAACGATTCCGACCTCGTGCTGTCCGACTCCAATGGTGGCGGCGGCGGCGGCGCCGTCTGGACGACGGCGAATTCGAACAACGTCGCCGCCGCCGGTGGTGGTGCTGGAGCGACGGCTGTGCTGCTCGACTCCGGCAACTTCGTCGTGCGGCTGCCGAACGGGTCTGAGGTATGGCGGAGCTTCGATCACCCGACGGACACCATCGTGCCCAACGTGAGTTTCTCGCTGAGCTACATGGCCAACAGCTTAGACCGCATCGTCGCGTGGAGGGGGCCCAACGACCCGTCCGCCGGCGACTTCACCATGGGCGGCGACTCCAGCTCGGACCTCCAGATCGTCGTCTGGAACGGGACGAGGCCGTACTGGCGACGAGCGGCGTGGACCGGCGCGTCCATCTTCGGCGTGATCCAGACCAACACCAGCTTCAAGCTGTATCAGACGATCGACGGCGACATGGCCGACGGCTACTCCTTCAAGCTGACCGTCGCCGACGGCTCGCCGCCGATGCGCATGACGCTGGACTACACCGGCGAGCTCACCTTCCAGAGCTGGGACGGCAACACGTCGTCGTGGACCGTCTTCTCCCGGTTCCCCACCGGCTGTGACAAGTACGCCTCGTGCGGGCCCTTCGGCTACTGCGACGGCATCGGCGCCACGGCGACTCCGACGTGCAAGTGCCTCGACGGCTTCGTCCCCGTCGACAGCAGCCACGACGTCTCGAGAGGTTGCCGGAGGAAGGAGGAGGAGGTGGGATGCGTCGGCAGGCGGCGGCGGCGATGGCTTCTTGACCATGCCGAGCATGAGGACACCGGACAAGTTCTTGTACGTGAGGAACAGAAGCTTCGATCAGTGCACCGCAGAGTGCAGCCGCAACTGCTCCTGCACGGCTTATGCTTATGCAATCCT
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| Protein seq | SSITAMAAYLAVFVFLLLVCSSCRADDKLTPARPLSPGDELISSGGVFALGFFSLTNSTSDLYVGVWYNQIPVHTYVWVANRNTPIKKSSSVKLVLTNDSDLVLSDSNGGGGGGAVWTTANSNNVAAAGGGAGATAVLLDSGNFVVRLPNGSEVWRSFDHPTDTIVPNVSFSLSYMANSLDRIVAWRGPNDPSAGDFTMGGDSSSDLQIVVWNGTRPYWRRAAWTGASIFGVIQTNTSFKLYQTIDGDMADGYSFKLTVADGSPPMRMTLDYTGELTFQSWDGNTSSWTVFSRFPTGCDKYASCGPFGYCDGIGATATPTCKCLDGFVPVDSSHDVSRGCRRKEEEVGCVGRRRRRWLLDHAEHEDTGQVLVREEQKLRSVHRRVQPQLLLHGLCLCNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 8473767 | 8473905 | - | OsNip_04t0226600-01 | OsNip_04t0226600-02,OsNip_04t0226600-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.640123 | 2.160937 | 2.548445 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0226600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004960 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005590 | RBH | 0.299781 | 0.0 | 1.487740 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005210 | RBH | 0.0 | 0.000000 | 1.617761 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005030 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004970 | RBH | 0.439477 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0126900 | RBH | 1.1190855 | 2.9529385 | 0.178921 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005010 | RBH | 0.000000 | 0.0 | 0.181777 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134200 | RBH | 2.0415695 | 2.0926975 | 0.019729 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004810 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005170 | RBH | 0.076574 | 1.161369 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004920 | RBH | 0.0 | 2.919210 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005070 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005110 | RBH | 0.000000 | 0.0 | 0.321028 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004930 | RBH | 0.000000 | 1.492970 | 3.258828 |
