Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0197100 | OGI:04021260 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:6630053-6630961 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGTGTCCGTCCTGTCGCTGCAACAGCGGCAGCATCGTCTTCCTCCTCGTCGAGGTGGTGGCGATCCTTTTCACCGGAGCGACGTCCAAAGACACCACGAATCCATTCACTTCGCTCGACTGCCCCTCGCCGCCACCCTCGGCTTCGCCGTCGCCACCCTCATCAGCGATCAACAGCACGTTCCAATCCAACGTGTTGGCGCTCCTCGACGACCTCCCTTCCGCCGCCGGCCCCACCGGGTTCGCCTCCCTGTCCCGCGGCGAAGGCGCCGACCGCGCGTTCGTCCGCGGCATGTGCCGCGGCGACTCCACGCCGGACGACTGCGCCACCTACCTCCGCAGCGCCGTGCTGGACATCAACGGCCACTGCAACTCCAACCGCCGAGCCGCCATCTGGTACGACAAGTGCTTCCTCAGCTACGCCGACACCAACGCATCCACCGCCTACGAGAACAGCTACCACGCGGAGCTCTACAACGTCAACAACGTCACCGACAAGGTCGGCTTCGAGAGGACGTACTACGCGCTGATGAGCCGCCTCAGGGCGCGGGCCGCGAACGACACGGCGCGGATGTTCGCCGCGGGAGAGGCGGTGTACGACCCCGGCGCCGACAACGGGACGATGTACGGGCTGGTGCAGTGTATGAGGGACCGCACGGCGGCGGAGTGCGACCGGTGCTTGAACGACTCGGTGCAGCAGCTGCCGAGCTGCTGCTGGGGACACCAGGGTGGGGTGGTGCTCGGCTACAACTACTACGTACGCGTCGAAATATACACCTACTACGATCTCACCGTCGATGCGCAGCCGCCGTCTCCCGGCCCGTCGGCCTCCAGCTCGAAGCCGTCTATCGGAGAAGGGCAGGGTGAGCCAGCTTCGATTCTCCAGTTAACTGCACTTGTACACTAG
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| CDS seq | ATGCCGTGTCCGTCCTGTCGCTGCAACAGCGGCAGCATCGTCTTCCTCCTCGTCGAGGTGGTGGCGATCCTTTTCACCGGAGCGACGTCCAAAGACACCACGAATCCATTCACTTCGCTCGACTGCCCCTCGCCGCCACCCTCGGCTTCGCCGTCGCCACCCTCATCAGCGATCAACAGCACGTTCCAATCCAACGTGTTGGCGCTCCTCGACGACCTCCCTTCCGCCGCCGGCCCCACCGGGTTCGCCTCCCTGTCCCGCGGCGAAGGCGCCGACCGCGCGTTCGTCCGCGGCATGTGCCGCGGCGACTCCACGCCGGACGACTGCGCCACCTACCTCCGCAGCGCCGTGCTGGACATCAACGGCCACTGCAACTCCAACCGCCGAGCCGCCATCTGGTACGACAAGTGCTTCCTCAGCTACGCCGACACCAACGCATCCACCGCCTACGAGAACAGCTACCACGCGGAGCTCTACAACGTCAACAACGTCACCGACAAGGTCGGCTTCGAGAGGACGTACTACGCGCTGATGAGCCGCCTCAGGGCGCGGGCCGCGAACGACACGGCGCGGATGTTCGCCGCGGGAGAGGCGGTGTACGACCCCGGCGCCGACAACGGGACGATGTACGGGCTGGTGCAGTGTATGAGGGACCGCACGGCGGCGGAGTGCGACCGGTGCTTGAACGACTCGGTGCAGCAGCTGCCGAGCTGCTGCTGGGGACACCAGGGTGGGGTGGTGCTCGGCTACAACTACTACGTACGCGTCGAAATATACACCTACTACGATCTCACCGTCGATGCGCAGCCGCCGTCTCCCGGCCCGTCGGCCTCCAGCTCGAAGCCGTCTATCGGAGAAGGGCAGGGTGAGCCAGCTTCGATTCTCCAGTTAACTGCACTTGTACACTAG
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| Protein seq | MPCPSCRCNSGSIVFLLVEVVAILFTGATSKDTTNPFTSLDCPSPPPSASPSPPSSAINSTFQSNVLALLDDLPSAAGPTGFASLSRGEGADRAFVRGMCRGDSTPDDCATYLRSAVLDINGHCNSNRRAAIWYDKCFLSYADTNASTAYENSYHAELYNVNNVTDKVGFERTYYALMSRLRARAANDTARMFAAGEAVYDPGADNGTMYGLVQCMRDRTAAECDRCLNDSVQQLPSCCWGHQGGVVLGYNYYVRVEIYTYYDLTVDAQPPSPGPSASSSKPSIGEGQGEPASILQLTALVH |
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| Function | Cysteine-rich repeat secretory protein 38 [UniProtKB/Swiss-Prot:Q9LRJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0197100 | OsNip_04t0197100-00 | Chr04 | 6630053 | 6630961 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGTGTCCGTCCTGTCGCTGCAACAGCGGCAGCATCGTCTTCCTCCTCGTCGAGGTGGTGGCGATCCTTTTCACCGGAGCGACGTCCAAAGACACCACGAATCCATTCACTTCGCTCGACTGCCCCTCGCCGCCACCCTCGGCTTCGCCGTCGCCACCCTCATCAGCGATCAACAGCACGTTCCAATCCAACGTGTTGGCGCTCCTCGACGACCTCCCTTCCGCCGCCGGCCCCACCGGGTTCGCCTCCCTGTCCCGCGGCGAAGGCGCCGACCGCGCGTTCGTCCGCGGCATGTGCCGCGGCGACTCCACGCCGGACGACTGCGCCACCTACCTCCGCAGCGCCGTGCTGGACATCAACGGCCACTGCAACTCCAACCGCCGAGCCGCCATCTGGTACGACAAGTGCTTCCTCAGCTACGCCGACACCAACGCATCCACCGCCTACGAGAACAGCTACCACGCGGAGCTCTACAACGTCAACAACGTCACCGACAAGGTCGGCTTCGAGAGGACGTACTACGCGCTGATGAGCCGCCTCAGGGCGCGGGCCGCGAACGACACGGCGCGGATGTTCGCCGCGGGAGAGGCGGTGTACGACCCCGGCGCCGACAACGGGACGATGTACGGGCTGGTGCAGTGTATGAGGGACCGCACGGCGGCGGAGTGCGACCGGTGCTTGAACGACTCGGTGCAGCAGCTGCCGAGCTGCTGCTGGGGACACCAGGGTGGGGTGGTGCTCGGCTACAACTACTACGTACGCGTCGAAATATACACCTACTACGATCTCACCGTCGATGCGCAGCCGCCGTCTCCCGGCCCGTCGGCCTCCAGCTCGAAGCCGTCTATCGGAGAAGGGCAGGGTGAGCCAGCTTCGATTCTCCAGTTAACTGCACTTGTACACTAG
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| Protein seq | MPCPSCRCNSGSIVFLLVEVVAILFTGATSKDTTNPFTSLDCPSPPPSASPSPPSSAINSTFQSNVLALLDDLPSAAGPTGFASLSRGEGADRAFVRGMCRGDSTPDDCATYLRSAVLDINGHCNSNRRAAIWYDKCFLSYADTNASTAYENSYHAELYNVNNVTDKVGFERTYYALMSRLRARAANDTARMFAAGEAVYDPGADNGTMYGLVQCMRDRTAAECDRCLNDSVQQLPSCCWGHQGGVVLGYNYYVRVEIYTYYDLTVDAQPPSPGPSASSSKPSIGEGQGEPASILQLTALVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.268585 | 0.825410 | 0.656454 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0199600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12060 | RBH | 0.103448 | 0.316189 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0197100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003920 | RBH | 0.0 | 0.000000 | 0.580739 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004440 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003950 | RBH | 0.606579 | 0.0 | 1.128833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003050 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0097600 | RBH | 0.018117 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004060 | RBH | 0.203482 | 0.0 | 0.129595 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0080200 | SBH | 0.018337 | 0 | 0.143939 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0015890 | RBH | 0.0 | 0.0 | 0.867756 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003240 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
