Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0622500 | OGI:03068380 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:23624215-23630665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTATATGCACAAACTTCAAATCAAAATCACAAGCAACCATACAATTCTGAGAGATTGTTTGCTTCCTATTTCTATATGACTCTTGCTCATCCAATGGAAGTTTCATAGGGATATGAGTACCATCTATAGCACCAATACAATTCTACACAGAAACAAGACATGTCAAAGTTATTTTTGTCCAGTTCATGAAAAATTAGGATATTCAAAATATGAAATCAGAACAACTTAACAAGTGGCCATACCTGAAAAAAGGGGTAAAATTGTGGTTTCCTCAAGATTGGATGTGGGTGTAGGGATGGTGCACGAATGTAGACAGATGTGAGATTTGTGATTGCTTCCTGCACTGCTTTGAAATATCTATGTATTGTGTCTGGACTATGCTGAAACCAATCTTGAAGTGTTTCATTGGTTGCATTTTTTGCCACTGTATATAAGAATATAGCAATATGCTCTTCTACTGAAACATATAGTACCAGTTAGGTACTCTTTCTCACGTAACTTATTGACTAGTGCATGAAAAATGTCGACCTCCATACGGAAGTTTCTTTTGCATAATCTTTCATGTCCTGTTAAAATCTCATGTACACGGCAACCCCCTGTAAGTTTTGACGTGTGCATTGGTCTCCTAATACAAGATGATTGTGATGAATCTCCTAAAGTAGGCAGAACAAAATGAATGAACTCATCATCACTTTCTGATATACGTCGGTAGCTTGGATTCATGGTGTGCAGATGTTACCAAACTGATGCTGTAAACTCAAATAGAAGAGAGCTAAAAATCAAGACTTTTGCTGAGGAAAAAACAATTTTGGTGCACCAGATGAACAAGTAGTACCTTGTTGTTACACGAGCAAGTAACGTCCAGCTATGGTGGCTAGACGATGAGTAAAGCTTCTGGAAAAATTATGCAGATAGTGAAGAGAAGAGCAAAGGATCAGCAAGCTTCTTCCACAGTTGATGAGCAAATAGAAAGAACAGGGGAAAATGGTGCACAAGGCTAACGAGGGCTATTTATGCACTTCAAAGCTAACGGCTAGTTGAGGGCCGATGTCAGTTGATGCAAACTTAAAAAAATATATTTCAAACGGCAGATTTCCTACACTTCTCCTGCGGTATATCCGAATGCACACTTTTTTTAAATTCCTGACGTTTAGCTTCCCATAGGATTGGACTCCACAGCTATCCCTATTCCTTCATTTTTCCTAATCCTATGAGTGAAAAAAATCCTTTAAAACGAGTAAGCCCTAATTGTGTCTTGACGCCATCATTCTTTCAGTCAATTCCTTATCTTTGGGTGAATTAACTGCAAGCGGAAGTTTTTGAGGAGCCTGTGTCATGTGCTGTCAACATGTATTTGAATTCCAGAAATTCCATGGCTATCTGCAAATACAATAAATGCACTTCTATTTGTACTAGTAGTATAACAGTAATCCTGTGGCCTAACAGTATACTGGCTTCTTGTTCTTGATTGCTGAAACTAAAGAAGAATTGCCAAAGACCATCCAAAGTGCACCACTACAAGACTGACCTAGTATCATATTGACGTCTTCAAGTATGATGAGGCCATTCTAAACTACTATTTAATTCTGCTAGGATGATAATCAAATGACAGTTCATAGTTAAAATAGCAGTTGCAACCAAAAGAGGCCATTCCGAAAGGCCAAATAAGTTTAGGTAACAAAAAAATACGTAACGAAAATAATTATATATTGAATAATCCTACAAGAAACATTCAGAATTTATTTTCCACCAAAAGAAAGTGAATAAATTGATGGAAGTAGCAAACAAAGAGTGTAAGAGAGGATGTTTTGCCTCTTGCAAGAACCAAGTGTTGTCCAGTTAGCAACAAATTGTTATGCATTCTTTTTCTGTATAACACCTCATAATAAAATTTGCACCAACTGTGACATAACTAAGCCTATGATCCAGAAGCTATCAACACTGGTTTTGAATCTTATGGTGATCATTATTAGATACTGAAACTATGAAGAACTTTTTCAGGAAATTGTTTAAACTATTAGATGGTTCTTCAGGAAGCCCATGAAAAAATTGCCGGCAACAAGATATGGAACTGTAAATCCTTTTGTGTGCATATTCAATGATGAACTGCTGGAAAGTGAGAACCAACCAAACAGCCATTGGTTAAAATTGGGTAGTTATATAACAGGTAAAAAATAGTGTATCGATTTAAGTTATCAGGAGTCAGAACAGATTTGTCTAAAGTTTAGGAAGACAGCACTAAGGTCTTGCAGCTGTGGACTTTATCTACTTCAAGTCCCGAAAGGCCTTGGAATGTTGGACAGAGAGCAAATCAAATCCAAGTTCAAATATTCAACAGCATAAAAGATTTTGTTGGTCTTTCTGAATAATGATTTGAGATAATAGAATTAATAAATCTATAAACAGGTTTTACTCCGCAGAATGTCTTGCAAGGTTATCAAAGAAACTGCAAGAGGAAGAGACCACTATATGTTTATTTTGGCAGAAAGATACTTAAATATCACAACATGCATGAAAATATGTCACAATGAGAGAGGAATAAGTCTGGCTTATGAGATAGGAATAAGATTGGATTGAAGAATCAGCAACTGAGCACACATCCTAACAAATATTGATTACACTTTGTATCTTCAAATGCCATGTCTGCATTGAATCAACTAGGGACATGATTAGTCTGAACAGTTTTGACTAACATAGATTATCAAGAGAAATCAGGGAAGTTGGTTAAATCACAAGGGAACATCCAGCGTGGTTCCAAAATAACTACTCGACAAGCCATATACTTCTAATTGCTGGAGAACAAGTGGATAAGTATTGTTGGACAGATTAAATTTAAGTGTTCACATGAAGAAATCCTAACAAAATTTTTTTTTCCAATGCATGATCTTTGGTCCAGCCGAGCTTCAATGCAACTCCAAACCTTAACTTGTAGATATTAAACAACAAATCCACCACTATTGATAATAATACAGACTTCACAATACCGTTGTAACATCATGGGGCCATGAACCACAAACAAACATCTACCCTTCAATTCAACTCCACATCCACCCTTTGGCATCATCTAAAGGAGCATAGAAACACATATACCAAACAAGATAAGTTTTTCAAAAAAATATAAACCGAAGGTACGGAACTCCCACTTATGTAAAGACTAATGGGTCTGATAGCTGGCCAATTAGGTGAGACTCCTCAAAATGCCAAAACCTAAAGATAACATAGAGACAATCCAAATCAAGATAATCTATGAAACGACCAGACCTTGCATGATGACCCTACTGGATGCCCTTGCTCAATTTCCAGATTAAGCTTTGTCACATGCTCATTTTTCTAGACCCACCCTGCAATCACATGCCAACAAGAACAACAAGACACTGAATCTAGAGATAATTGACCAAACCCAGAAAGTGGTATATCACAAACCAGACAAGTCAACTTCTTAAGAAAATATCCACGTCACCATGGACAAAAGATAGAATCTGCAAGCAGAGTAAGGCATAAGCAACACAAAATGAAATACAGACACAAGAACAAGAGATGCAAGGCAAGAGAGCACTAAATAGTATATAGTTGTATTGGCTTGAAGCTCCAAAACACACCCTCGAACCCTCCCGTCTTTGTGGGCATTGAATTTTCAACAAGGAGTTGAAGGGAAAATGCTAGTGGTTCAGAAAATTTCAATCGGAGTTGGATTGCCCTTCCAAAATGACCGAAAATGGACCTGAAACGAGCAAAATACTATCTTCTCTGAATCTTTATTTAGGTGGAAGCTGCTTAAACATCAGAAAAATTATGTCATGGTGGGTGAGGGATAAGCCTGGCTTTAGAGAGGTCAAAGAACATCCAAATCCGTATTGATTTTGCACTGCAACTCTGAATGTCGTATCTGCAACTCCAACAAGCCAGTACTTCCAATTGCTGGACAAAAAAAGCGAATATCCATGTAAGCATCGCTTAAACTGGACTGCAAGAACTGAAAGCAAATGAGTTGATGAGTATATTGCGGCTTCATGGTCTTTTTTCCAGTTATGTGATCGTTGCTCCAGTCAAGCTTCAACCTTTAACTTGCACATATCTGAGCAGCAACAAATCCAATCAGGGTTGTCATAGCTATTGCAGCACAAACTTCGTAATATCACCATAGAATCAAAAATCCTTCTGCATCATCTAAACAAGAACAGAACTCATACCACAAAAAGAACCAACTCAGGTTGTCTTGAATCCACTCAAACTAGGGGATAATCCAACAACTACCCATCAGGGAAGACCACATAAGAAGGCCAAGCCAAACGATCCGTATTCTGAAATCGCTAAATCCAGATAACATAATCTCAAAAAATCAACCAAAACCTTGTATGCCCCTTCGTTGACATACAGAGCTCCAATTCCCAGACCGACCCTATGACTATCATGCGAACAAACAGCTCAGGCATTGAACTTATACTTAATGATTGAGGTACAGTGATAGAACACAAACCGAACAAGTCAACAGCCTCCAATCAATAACCTTGGAGAAAATTAAAGAATCTGTGACAAACAAAGAAAAGCAAAGGCACACCAAAATCATAGCTATATGTCGTAGAGAGCAATTCTGATGACCGAAACAGAAATTGAACGAGAAGGGAAAAGTTTTAGGCAGACTAGCAAAAGTATGTTCTGGTTGTAGGATTCTCCTGTAGTCCCATCTATCTTGAAGCTCCATAACTCCTATGCAATTCCATCTCTGCAGGTAAATCCGAGTATTTAAATTCTACCTTTGTGAGAATTTAAGGGTAGTGATTTAAAACTCAGAATCAGGTTGGCCTTGCAAATTTATGAACTTGACCTGCAGTGAGCAAGAGACCATTTATTCGGGAAGAAATTCAACTTTGTAAATATTTAATTTCTAAGTGATGAATTGAAGAGAAGGTGATTTAAAGATTTCACTCAGCATCAGAATGGCCTTGTAAAATTATGAACTAGACCTGCAGTAAGCAAAGAGACCATTTATTTGGGAAGAAATTCAACTTTGTAAGCATTGAACATCTACTAATGATTAAGAAGGGAAAAGGGTGGTGATTTAAGGCTTCACTCAGATAGGCCATAAAAATTATGTGGAGCCTTGCAATGACCAGGAGACTTTATTTTGGAGGAAAGCAGTCTAAGCATAAACAAAATCACTTAAAGACTGAGTGGCATAAAGTCTGGAGTTTGCAGATATTAGTATAGACCGAGGCAGATATTGCAAATTCCATCTTTGGCATAGGAGTATCTGCAAGAACTATTAATTACTGACGAAGAACATGTAAAAGAAATCAACTTGGTTATCAAAGATTAAGCAGGTAAAGGTTGTCGATCACAAAAAAGGGACTGCTAGCAGCCTGTATAATTCCAACTGATGCGGCAAATAGGACTCGCTGTGAGCTGCATATATCCAATTCCTGAAGAACAACCAACTTCCCAAATCAGACCTTCCAGACATAAATCAAATTATGCTGACAACTAAATAAAATCAAGGGGGATCAGGACCCAAAAAAACATTGAAATGATGAAATCCCCATCTAACAATCTCCCGTATAATCTATCTCCAAACCACTTAGAAATCTGCCCATCTTGCGGATCTGACCAAAGGAAATCCAGCCAGGATAGTTTCAGAACTTCCATGTCAGGATAATTTCAGAACAACCGTGCACTAATCAAAACAACCAAGAACCATAATTCATCATGAATCCAAAACAACCATGAACCTGGACAATAACAATCAAACCTCCACCAATCCGGTTCATCTCAACAGTCATCCTCCCTCCTGCATCATCTAGAGGAGCACAAACACATACCGACAACAAGCCAGATCAGCGGTCACAAATAACAACAATCAACCCAGGGTCTCGAATCACCTCGCGTGAGGAATGATAAGAACCGATGATCATCCATCCATAGATTGAAGTAACGTTAGCATATCCACTCAAATTGCCAAATCTGAAATCACCGAAACCAAGTGACTAAATCAAACGGACCGTAGACAAGAAACGTTCACCTCTTCAACCACACGACGCCACAGGAACCTCCAATCCTGGATCAAACCCGCTCCTGCAACCGAACACGCCTAGAGGAGGAAACACGGGGAAAAGGTAGAACACAGAATTCAAAACCAGAACAAGATCGGATCTAATCGGAATCAAATCACCATAGAGAGAGAAAAAAAATCAAACACGTCGCAAAGCGAACCGAACAGGAGGGGCTCCCGGAATCGAGCGTAGACGGGGCTCATCTCATCTCATCTCACCGGCGGTGATCTGCGGGAACAGAAGGCGGAAACAACAACGAGGACGATCCAAATCAACCCGACGATTCAGAAAAAAAAAGGAAAAATAAAAAACACAACTCGAGTCGAATCGAGAGAGGAGATCGGAAACGGGAAGAAGCAAAACGCGACCACACGCCCCCGGTGAGAGCACGAAGAAGAAGACCG
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| CDS seq | ATGAATCCAAGCTACCGACGTATATCAGAAAGTGATGATGAGTTCATTCATTTTGTTCTGCCTACTTTAGGAGATTCATCACAATCATCTTGTATTAGGAGACCAATGCACACGTCAAAACTTACAGGGGGTTGCCGTGTACATGAGATTTTAACAGGACATGAAAGATTATGCAAAAGAAACTTCCGTATGGAGGTCGACATTTTTCATGCACTAGTCAATAAGTTACGTGAGAAAGAGTACCTAACTGGTACTATATGTTTCAGTAGAAGAGCATATTGCTATATTCTTATATACAGTGGCAAAAAATGCAACCAATGA |
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| Protein seq | MNPSYRRISESDDEFIHFVLPTLGDSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYLTGTICFSRRAYCYILIYSGKKCNQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0622500 | OsNip_03t0622500-01 | Chr03 | 23624215 | 23630665 | - | RAP2018-11-26 | ||
| CDS seq | ATGAATCCAAGCTACCGACGTATATCAGAAAGTGATGATGAGTTCATTCATTTTGTTCTGCCTACTTTAGGAGATTCATCACAATCATCTTGTATTAGGAGACCAATGCACACGTCAAAACTTACAGGGGGTTGCCGTGTACATGAGATTTTAACAGGACATGAAAGATTATGCAAAAGAAACTTCCGTATGGAGGTCGACATTTTTCATGCACTAGTCAATAAGTTACGTGAGAAAGAGTACCTAACTGGTACTATATGTTTCAGTAGAAGAGCATATTGCTATATTCTTATATACAGTGGCAAAAAATGCAACCAATGA
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| Protein seq | MNPSYRRISESDDEFIHFVLPTLGDSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYLTGTICFSRRAYCYILIYSGKKCNQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0622500 | OsNip_03t0622500-02 | Chr03 | 23626768 | 23630664 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTTCAAGATAGATGGGACTACAGGAGAATCCTACAACCAGAACATACTTTTGCTAGTCTGCCTAAAACTTTTCCCTTCTCGTTCAATTTCTGTTTCGGTCATCAGAATTGCTCTCTACGACATATAGCTATGATTTTGGTGTGCCTTTGCTTTTCTTTGTTTGTCACAGATTCTTTAATTTTCTCCAAGGTTATTGATTGGAGGCTGTTGACTTGTTCGGTTTGTGTTCTATCACTGTACCTCAATCATTAA
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| Protein seq | MELQDRWDYRRILQPEHTFASLPKTFPFSFNFCFGHQNCSLRHIAMILVCLCFSLFVTDSLIFSKVIDWRLLTCSVCVLSLYLNH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.553726 | 3.495456 | 8.753943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42464 | RBH | 1.749177 | 1.539302 | 1.748584 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0622500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026740 | RBH | 0.000000 | 12.936363 | 5.946669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026470 | RBH | 0.000000 | 6.995872 | 6.020725 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026530 | RBH | 0.323347 | 2.996884 | 9.105314 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026560 | RBH | 0.092054 | 0.078930 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026340 | RBH | 36.491985 | 149.391830 | 143.940018 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0417200 | RBH | 2.8955125 | 63.941759 | 43.24074 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026120 | RBH | 0.714027 | 2.846642 | 4.899836 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0420800 | RBH | 1.9928485 | 63.000633 | 3.5219425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026380 | RBH | 2.165170 | 7.278388 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026400 | RBH | 3.713849 | 228.384796 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026500 | RBH | 28.929630 | 178.123322 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026250 | RBH | 2.884763 | 26.046427 | 7.552004 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026170 | RBH | 0.045136 | 19.493731 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012450 | SBH | 0.000000 | 5.717339 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012530 | SBH | 0.0 | 0.000000 | 0.0 |
