Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0335100 | OGI:03033010 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:12390064-12391618 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTCGATCTCACAATCACTGCTGCTGCACCATTCGTCCATTCCTTTCCTCCTCCGTTCTCCGACGATCGCTGCTGCACAATTCCTTTCCTCCTCCGTTCTCCGACGATCCAGCTCGAGGAACGATCCATGGCGGTGTTCTACAGGTACAGGAGCGGGGTGGACACCTTCTCCGTGCCCATGCAGGAGCCTTCCGTCTCCGTCGCCGAGCTCAAGCGCCTCATCATGGCCACCGCGCGCCACGGCCATTGACGTTCGCGCGGCCGCGGCCCCAGGGAGAGCGTCGCGCTGTACAGCGACAACACCGGCGAGGAGTACGCGGACGAGGCCGAGCTGATCCCGAGCGGCTGCACGGTCGTCGTGCGGCGCCGAGTCGCGGGGCCACCTGCAGAGACGATCGTCGAGTTGACAACAAAGAAGCCAATGTCGCAGGGCGGTGGTGGTTCTTCGTCGGACTCTGGAGCGACGTCGACGGGAGCTGAAGTCGACGACGAGGAGAAAGCTATCAGCGCCGTGATCGACGCCGCACAGCTCAAGTGGGAGGCCCCGACGTCACAAGGAGGCCACTGTTACGGTCACCGCGGCGCACACGCGGGCAGGGCGCCGCCGGCCGGGTACGTGTGCCACCGGTGCCGCGTCCCGGGACACTTCATCCAGCACTGCCCCACCAACGGCGATCCAAGATTCGACATCCCGAGGGTGGCGCCAACTCCAGCGTCCTCACCGGCGCCGGCTGAGTCCGGGGAATCTGGCGGCGTCATCCCGGCGGAGCTCTACTGCAAGATTTGCCGGAACGTGATGGCCAACGCGGTGCTGGCGAGCAAGTGCTGCTTCGACAGCTTCTGCGACAGGTGCATCCGGGACCACATCGCCGCCAAGTCCAGGTGCGCGTGCGGGGCGCAGGCGCGCGCCGGCGACCTGATCCCCAACACGACGCTCCGCACCACCATCGCCAACCTGCTCGCCACCACCACCGGCGCCGCAGCAAGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTCCGCCGGCAGCAACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGCCGCTTCGCAGGCGAGCCGCAGCAACGTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAGAAAGGCGCGGGAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGTCGACGGCGATCGCCACGGCAGCTACGGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGACCCCTTCTTCGCCGTCGGCGTGCCATTCGGAGCCGATCCTTACATGTACTACGGCGGCGCGCCTTACGGCTGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACACGAAGAGGACGCGCCTGCGATGATCGCACGTCACCGGTCAATTGTTGCCTGCTGGCTGCGCTCAACGCTAGCTTGGAGATATTTTCTTCTCTCCTTTTTGTGTTCTCCGATGATTCGGAAGACAAGTAGCGAGTCAAAACATGTATGATTCTTGTATAGTTGTATGTGTAAATGCT
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| CDS seq | CGTTCGCGCGGCCGCGGCCCCAGGGAGAGCGTCGCGCTGTACAGCGACAACACCGGCGAGGAGTACGCGGACGAGGCCGAGCTGATCCCGAGCGGCTGCACGGTCGTCGTGCGGCGCCGAGTCGCGGGGCCACCTGCAGAGACGATCGTCGAGTTGACAACAAAGAAGCCAATGTCGCAGGGCGGTGGTGGTTCTTCGTCGGACTCTGGAGCGACGTCGACGGGAGCTGAAGTCGACGACGAGGAGAAAGCTATCAGCGCCGTGATCGACGCCGCACAGCTCAAGTGGGAGGCCCCGACGTCACAAGGAGGCCACTGTTACGGTCACCGCGGCGCACACGCGGGCAGGGCGCCGCCGGCCGGGTACGTGTGCCACCGGTGCCGCGTCCCGGGACACTTCATCCAGCACTGCCCCACCAACGGCGATCCAAGATTCGACATCCCGAGGGTGGCGCCAACTCCAGCGTCCTCACCGGCGCCGGCTGAGTCCGGGGAATCTGGCGGCGTCATCCCGGCGGAGCTCTACTGCAAGATTTGCCGGAACGTGATGGCCAACGCGGTGCTGGCGAGCAAGTGCTGCTTCGACAGCTTCTGCGACAGGTGCATCCGGGACCACATCGCCGCCAAGTCCAGGTGCGCGTGCGGGGCGCAGGCGCGCGCCGGCGACCTGATCCCCAACACGACGCTCCGCACCACCATCGCCAACCTGCTCGCCACCACCACCGGCGCCGCAGCAAGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTCCGCCGGCAGCAACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGCCGCTTCGCAGGCGAGCCGCAGCAACGTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAGAAAGGCGCGGGAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGTCGACGGCGATCGCCACGGCAGCTACGGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGACCCCTTCTTCGCCGTCGGCGTGCCATTCGGAGCCGATCCTTACATGTACTACGGCGGCGCGCCTTACGGCTGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACACGAAGAGGACGCGCCTGCGATGA
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| Protein seq | RSRGRGPRESVALYSDNTGEEYADEAELIPSGCTVVVRRRVAGPPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEKAISAVIDAAQLKWEAPTSQGGHCYGHRGAHAGRAPPAGYVCHRCRVPGHFIQHCPTNGDPRFDIPRVAPTPASSPAPAESGESGGVIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSRCACGAQARAGDLIPNTTLRTTIANLLATTTGAAASASSGTDKTRSSAGSNAPQPAAPQSPAASQASRSNVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPGYVDPFFAVGVPFGADPYMYYGGAPYGCGGAAYGYYGGEDRRDTKRTRLR |
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| Function | E3 ubiquitin ligase PQT3-like [UniProtKB/Swiss-Prot:B9DFV2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0335100 | OsNip_03t0335100-01 | Chr03 | 12390064 | 12391618 | + | RAP2018-11-26 | ||
| CDS seq | CGTTCGCGCGGCCGCGGCCCCAGGGAGAGCGTCGCGCTGTACAGCGACAACACCGGCGAGGAGTACGCGGACGAGGCCGAGCTGATCCCGAGCGGCTGCACGGTCGTCGTGCGGCGCCGAGTCGCGGGGCCACCTGCAGAGACGATCGTCGAGTTGACAACAAAGAAGCCAATGTCGCAGGGCGGTGGTGGTTCTTCGTCGGACTCTGGAGCGACGTCGACGGGAGCTGAAGTCGACGACGAGGAGAAAGCTATCAGCGCCGTGATCGACGCCGCACAGCTCAAGTGGGAGGCCCCGACGTCACAAGGAGGCCACTGTTACGGTCACCGCGGCGCACACGCGGGCAGGGCGCCGCCGGCCGGGTACGTGTGCCACCGGTGCCGCGTCCCGGGACACTTCATCCAGCACTGCCCCACCAACGGCGATCCAAGATTCGACATCCCGAGGGTGGCGCCAACTCCAGCGTCCTCACCGGCGCCGGCTGAGTCCGGGGAATCTGGCGGCGTCATCCCGGCGGAGCTCTACTGCAAGATTTGCCGGAACGTGATGGCCAACGCGGTGCTGGCGAGCAAGTGCTGCTTCGACAGCTTCTGCGACAGGTGCATCCGGGACCACATCGCCGCCAAGTCCAGGTGCGCGTGCGGGGCGCAGGCGCGCGCCGGCGACCTGATCCCCAACACGACGCTCCGCACCACCATCGCCAACCTGCTCGCCACCACCACCGGCGCCGCAGCAAGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTCCGCCGGCAGCAACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGCCGCTTCGCAGGCGAGCCGCAGCAACGTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAGAAAGGCGCGGGAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGTCGACGGCGATCGCCACGGCAGCTACGGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGACCCCTTCTTCGCCGTCGGCGTGCCATTCGGAGCCGATCCTTACATGTACTACGGCGGCGCGCCTTACGGCTGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACACGAAGAGGACGCGCCTGCGATGA
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| Protein seq | RSRGRGPRESVALYSDNTGEEYADEAELIPSGCTVVVRRRVAGPPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEKAISAVIDAAQLKWEAPTSQGGHCYGHRGAHAGRAPPAGYVCHRCRVPGHFIQHCPTNGDPRFDIPRVAPTPASSPAPAESGESGGVIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSRCACGAQARAGDLIPNTTLRTTIANLLATTTGAAASASSGTDKTRSSAGSNAPQPAAPQSPAASQASRSNVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPGYVDPFFAVGVPFGADPYMYYGGAPYGCGGAAYGYYGGEDRRDTKRTRLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0335100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028730 | SBH | 0.406664 | 2.731575 | 4.708530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028430 | SBH | 0.466151 | 0.000000 | 2.009203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028540 | SBH | 0.763291 | 4.505226 | 8.552639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028620 | SBH | 0.088792 | 0.088782 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028270 | SBH | 3.374711 | 0.000000 | 15.039666 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0204600 | RBH | 0 | 0.059009 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027980 | SBH | 0.120813 | 0.337487 | 1.750285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0209300 | RBH | 0.015697 | 0.128558 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028350 | SBH | 0.201094 | 0.062490 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028400 | SBH | 0.221851 | 1.054832 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028410 | SBH | 8.228240 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028190 | SBH | 0.207121 | 0.000000 | 0.160790 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028140 | SBH | 0.000000 | 2.676224 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028120 | SBH | 0.084469 | 0.860183 | 1.758512 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028130 | SBH | 0.000000 | 10.186410 | 3.605116 |
