Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0028190 | OGI:03073500 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:28473140-28478640 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagacagtaaaatgtagtaaacgactattaaaggtcaaggattgttccactcatctttggaggacattgtcattacatagaggggatgagaattgctctcattcatttcacaTtaatagtagctcataattacaattccgttaagaggaaaatcgctttcggagatttctcctcagcttacaattaacacatacatCcatcaacaagcatttgatatggaatgctgcaagatgttcatcagcttcattcattcaggtatcacggccttgtgttgcgtccacggtgacctatctatcttttgcctccccatctcctcttgaagttgcgctcatcatcgcttgaatcctcgtaagtaaggctcctggaactgtgactggacctcgctctgctgtgcctgtcaccaccggttggagatgaatcctcgtaagtaagcttcctggaactgtacctggacctcgctctgctgtgcctgtcaccaccggttggagatggagaagacgcgcgcattcttgctgctgcggtgatcctcggcgtaatcactagagcggtgatcctcgacgtaatcaatggagcgcctatggtccctcctgtcagagcttgacctgctggtcttgtaactgggatcggtgccatgagaagagctcagacgctggttacgctctgatgatcgagactgattggcaggttcaggttctttgggcttcgccgccagccttggacgtgcagcgtcttcgtttgcccGgtgaatcatagattgagtttcccagctgaagatgacaaataaacgaactgttaagtgttgaaatggaaagaggggctctacatgactgacagccaagtgtaatatagggaaattaaaatgcaacctttctaagaatctcttgaccaaattgttctattagttaattttgtcgtcattttactattagtactggtgagataacaagtctgataacatacataccagtgagtatttgccaaattgccttgcattgctgatggaaattgcagtggcatgttgccgatggaattgacaccataagggcccatcggatagccaccataaggcatgccgctgggccgtacatgtaaggatcggttaacaaggatacccactgacgtaagggttgcaatacgcagggtcaaatggaatgctgtaaccatagttagcattgttaggatgaacaattttagttgaatctgcattcttgcgcttcttcttcaattgatcagtcttggaagctttgggttccatggttcctgaaatagtggcggctttgaagtggagtcagttacatcttttaatctggcatcagcagttggtacaatcttctctaccatatccctgcagaattgccttcatctttcacttcgagatcaacacctgttgtcaatttatgctcaagatggctaacatgttctgtagcaacttggaggccagcatcaggagcagctgatgatatgtggtgatccttagattgcttttccaaggcagctgaaggagtttggcttgctgaattaggatccacgttgctgcctgaagagctcctgtgcttccctgtaccactagtgatgctgctagcccttgttgccagcatattgctgattgtgctccgaagtgtttggttgggaatcaggtcatctgcaagaaccttgactccacaaatgcacttggattgtgtaatgatgtaatcacgaatgcctgagagaagaacaacacagttattagctatgcagttgaggacaggcaggaaatgctatcacagagaccgctgttattaaactattaccgttgaaaacatgtttaagcatgtatttagacaaagttttgagtattggtaaattactaaatgttttatttgtcttggaaagtacttaacagtgctataattttatcgagttttacaaatatagtactccctctgttcttttatgtatgacgttgtttagttcaattttgaactaaccaacatcatatattgaaggatggaggtcgtacaacaataactattcgtaattttcctgtcaaataccacgtcaatgtccaaaacaacatgcttctgtgactaatttgaagcatgactagccacatttcgaatatcaaagtaatgacattgttcatatccacagcaaagagttaaggagaaatacagaatttactcacatttatcacagaaactgtcgaagcagcacttgcttgtcaacaccgcatctgccatcactttattacatagccggcaatggagctcagctggcaagtcgtcaacaacactcacagatgcagctggggcaagagctgatggaatgccatcaataggacatgcagatacttctggcacaagagtatgggcttcttgtaatcgtcaaatttgggatcaccaatggtcgggcaatggtgaataaaatgccctggaattcggcatctgtagcagacatagccagatggaggtgtctttctctccttggcaatgttgaatgaaatggcctggaactccacagctgcggcacatagcctggtggaggtgtctcccttcgaccggtccatgaccttcagttataatagatagatatgtcaaaacaaatgcagcgcaatcatataatttacataacaacaatacaaagcaaatcattagagttctggcatcagaaaatggtgaggaactgtctagcttaaccaatgataagttcaagtgaaaaatgccattacaatgtgcatgaccatttgtctcataacaaatcaacaaccatgattttttccattttttaaccaatttagtgtccatatcataatcataactgggacaacagaacataaatctgaaccaagaggattccagcattaccataacgtcctgacgtaaaCcttccaccagtctgtcctcttttagatggcttgtcttccctgcatgcaccaagatacgaggctgtcattaggaaggtgccagaaaaaattgatacctgtgaggaaagaaaataagatgcactaaccatttgagttcagctgcatcaattatagatgcgattgcagcatcctcatcctgtacttctgtagaggaacaagattttgaggttgattcagtaatctctgacttgtttgaagctatagcaccatcttctataacttcccgcctgcaattaagcccacaatgccaagtattagtatatacaaacaaacctctcctcagctgattcagattcaatccaagcacttgaagtaaaatctcaaataaaagattgtggagaagacatacgaggagaacaagacgattttctctgattgttgcccagaagttcggcggaccaacacagtcgagttctgcggtatcatggcattttcatctagaaattctgttttgagaaacaaacacagaaaacagaaatgtcaaaagcattgcactcaaacaatactccttttattggtgaaacgaagtcttctcatgtacaagatgcgcttaaacaacaaaactgaactgtccagatgaaattaaagaatattttagtaatagatcacaaaactgggaattttgtgggaacaactgaggtgtaatccttgtgaaatctgggttcacgtacaggatggcaaaagaagacgggatggtggaagtacaatttgcaagtacaaacttccacaaggattactggacaagatgtacaaaaaaaaaaagaaaggaaagtgatatggcaaaaCctctcatccaggaacaagctcactgaaaaaaaaaacttatatggacatatctcgtcaactggcgaaaagatgaggccatcttccactgcaataataatgtgctaacacctgtgtccgagtacagtatcttaagcacgtaaaatggacctccattacaatcacaaaacaggatttcatcctctctaaaatacaaattaggatgtcacagggatacagaaacattgaccatcagatgggaatcagtgacacgcaaaactgatagccaatgccattactggaacatttcaacaacaacgtaggaagaaataataaaaaccatctaataagaattcatgaaatggggaaaataataatcagggttgtaataacatatttaggcatgtcgaacatgcgcagactgaaatgagcttacacttaatatcattatattgacaaagcataaagatcattaaaaacatctgaatagcattggtatgagtcccaatattgcattcagatcaactgaacaacagaatatgatcaacacataggagtgcctaatagaactaacacatatctagattcctaattcatatcttgcaagaacgttcaattcctaattctgatcaccttacaataattactagttactaataatcggattgacactttgcccaacacttgaccttgttaaacttagatagttacattGggtaggatataTaaaataagtttgtttcacatcagcaaaatattgggaacttggatgcacgcagaataatagctaatgggcacaattgttattacttatgatggacgaagtgctccgcacacaagaacgcaagttttcctaaaggttacagcaagaattaataatcgacagaggcgctaatatgccagcattcttcattgagaagaaatgctgggtacaatgccctgactcagtcctaattggtAaaatcatgaaccaatattatcctacaggctaaaaagataatccatatggacaaaaaaaaaaaaatactattccaagtattatccaattcccagctttgtgatcataaatgatttgtttcagtgattcaagccaattaacaggaaactgatgcggttacggataaacgaatgcgttgtacagatagttaactaccttcgccggtctgggcgttggagagacaatatcttctctggggccgcggccacgggtgcggccacggccatgtttgtcgctcgtcaagatgagctgcttgagttcagaaacagagacaaaagaatggggcacgggcacagaaatagtttccttgaactcttattttgtaatacacaacacccatggtgtgatatcaagttttttttcccttctcgcctctcttctgcacaattattttttctttcggcgagagagggctgagactttttccctcagatatcaaaatacacaataatacacagagatagagagttacagatcgaatcgatctacggggggaatcgcgtcgatcggcggccggcgtgtccctcgccgccgaggaggaaggaggaagagacgaacccgcgcgagtgagtcccgagtcccgacgaaggaggcctgcccggagtcggaacgcgagaggcGggcggagtagaggaaggcgccgagtcgaggcgatggcggggaggggggggggcgagcgcgcgcgggcgggcggtcgacttccgccggcgtcgctggcccggatgcggatgcggaggcggaggcggagtcctcgccggaggcggccggagagctagggtttccgtcgcgttcgccgaatagaaggggatttgggggggggtggaattgggggagaaatc
More
|
||||||||||
| CDS seq | atgataccgcagaactcgactgtgttggtccgccgaacttctgggcaacaatcagagaaaatcgtcttgttctcctcgcgggaagttatagaagatggtgctatagcttcaaacaagtcagagattactgaatcaacctcaaaatcttgttcctctacagaagtacaggatgaggatgctgcaatcgcatctataattgatgcagctgaactcaaatgggaagacaagccatctaaaagaggacagactggtggaagGtttacgtcaggacgttatggtaatgctggaatcctcttggtcatggaccggtcgaagggagacacctccaccaggctatgtgccgcagctgtggagttccaggccatttcattcaacattgccaaggagagaaagacacctccatctggctatgtctgctacagatgccgaattccagggcattttattcaccattgcccgaccattgcattccatttgaccctgcgtattgcaacccttacgtcagtgggtatccttgttaaccgatccttacatgtacggcccagcggcatgccttatggtggctatccgatgggcccttatggtgtcaattccatcggcaacatgccactgcaatttccatcagcaatgcaaggcaatttggcaaatactcactgctgggaaactcaatctatgattcacCgggcaaacgaagacgctgcacgtccaaggctggcggcgaagcccaaagaacctgaacctgccaatcagtctcgatcatcagagcgtaaccagcgtctgagctcttctcatggcaccgatcccagttacaagaccagcaggtcaagctctgacaggagggaccataggcgctccattgattacgtcgaggatcaccgctctagtgattacgccgaggatcaccgcagcagcaagaatgcgcgcgtcttctccatctccaaccggtggtga
More
|
||||||||||
| Protein seq | MIPQNSTVLVRRTSGQQSEKIVLFSSREVIEDGAIASNKSEITESTSKSCSSTEVQDEDAAIASIIDAAELKWEDKPSKRGQTGGRFTSGRYGNAGILLVMDRSKGDTSTRLCAAAVEFQAISFNIAKERKTPPSGYVCYRCRIPGHFIHHCPTIAFHLTLRIATLTSVGILVNRSLHVRPSGMPYGGYPMGPYGVNSIGNMPLQFPSAMQGNLANTHCWETQSMIHRANEDAARPRLAAKPKEPEPANQSRSSERNQRLSSSHGTDPSYKTSRSSSDRRDHRRSIDYVEDHRSSDYAEDHRSSKNARVFSISNRW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0028190 | OsLiXu_03g0028190.01 | Chr03 | 28473140 | 28476488 | - | NAM | ||
| CDS seq | atgataccgcagaactcgactgtgttggtccgccgaacttctgggcaacaatcagagaaaatcgtcttgttctcctcgcgggaagttatagaagatggtgctatagcttcaaacaagtcagagattactgaatcaacctcaaaatcttgttcctctacagaagtacaggatgaggatgctgcaatcgcatctataattgatgcagctgaactcaaatgggaagacaagccatctaaaagaggacagactggtggaagGtttacgtcaggacgttatggtaatgctggaatcctcttggtcatggaccggtcgaagggagacacctccaccaggctatgtgccgcagctgtggagttccaggccatttcattcaacattgccaaggagagaaagacacctccatctggctatgtctgctacagatgccgaattccagggcattttattcaccattgcccgaccattgcattccatttgaccctgcgtattgcaacccttacgtcagtgggtatccttgttaaccgatccttacatgtacggcccagcggcatgccttatggtggctatccgatgggcccttatggtgtcaattccatcggcaacatgccactgcaatttccatcagcaatgcaaggcaatttggcaaatactcactgctgggaaactcaatctatgattcacCgggcaaacgaagacgctgcacgtccaaggctggcggcgaagcccaaagaacctgaacctgccaatcagtctcgatcatcagagcgtaaccagcgtctgagctcttctcatggcaccgatcccagttacaagaccagcaggtcaagctctgacaggagggaccataggcgctccattgattacgtcgaggatcaccgctctagtgattacgccgaggatcaccgcagcagcaagaatgcgcgcgtcttctccatctccaaccggtggtga
More
|
|||||||
| Protein seq | MIPQNSTVLVRRTSGQQSEKIVLFSSREVIEDGAIASNKSEITESTSKSCSSTEVQDEDAAIASIIDAAELKWEDKPSKRGQTGGRFTSGRYGNAGILLVMDRSKGDTSTRLCAAAVEFQAISFNIAKERKTPPSGYVCYRCRIPGHFIHHCPTIAFHLTLRIATLTSVGILVNRSLHVRPSGMPYGGYPMGPYGVNSIGNMPLQFPSAMQGNLANTHCWETQSMIHRANEDAARPRLAAKPKEPEPANQSRSSERNQRLSSSHGTDPSYKTSRSSSDRRDHRRSIDYVEDHRSSDYAEDHRSSKNARVFSISNRW
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0028190 | OsLiXu_03g0028190.02 | Chr03 | 28473156 | 28478640 | - | IsoSeq | ||
| CDS seq | tttctcccccaattccacccccccccaaatccccttctattcggcgaacgcgacggaaaccctagctctccggccgcctccggcgaggactccgcctccgcctccgcatccgcatccgggccagcgacgccggcggaagtcgaccgcccgcccgcgcgcgctcgcccccccccctccccgccatcgcctcgactcggcgccttcctctactccgccCgcctctcgcgttccgactccgggcaggcctccttcgtcgggactcgggactcactcgcgcgggttcgtctcttcctccttcctcctcggcggcgagggacacgccggccgccgatcgacgcgattccccccgtagatcgattcgat
More
|
|||||||
| Protein seq | FLPQFHPPPNPLLFGERDGNPSSPAASGEDSASASASASGPATPAEVDRPPARARPPPSPPSPRLGAFLYSARLSRSDSGQASFVGTRDSLARVRLFLLPPRRRGTRRPPIDAIPPVDRFD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr03 | 28475688 | 28475984 | - | OsLiXu_03g0028190.01 | OsLiXu_03g0028190.01,OsLiXu_03g0028190.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.207121 | 0.000000 | 0.160790 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0659400 | RBH | 3.934788 | 1.173201 | 6.898556 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g45730 | RBH | 1.785954 | 0.678527 | 0.799478 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0659400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028730 | SBH | 0.406664 | 2.731575 | 4.708530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028430 | SBH | 0.466151 | 0.000000 | 2.009203 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028540 | SBH | 0.763291 | 4.505226 | 8.552639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028620 | SBH | 0.088792 | 0.088782 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028270 | SBH | 3.374711 | 0.000000 | 15.039666 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0447900 | RBH | 4.5599815 | 63.253136 | 31.73938 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027980 | SBH | 0.120813 | 0.337487 | 1.750285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0448200 | RBH | 10.4026095 | 66.9366015 | 11.577455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028350 | SBH | 0.201094 | 0.062490 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028400 | SBH | 0.221851 | 1.054832 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028410 | SBH | 8.228240 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0013130 | RBH | 0.367269 | 0.0 | 1.064658 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028140 | SBH | 0.000000 | 2.676224 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028120 | SBH | 0.084469 | 0.860183 | 1.758512 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028130 | SBH | 0.000000 | 10.186410 | 3.605116 |
